jgi.p|Nanoce1779_2|180787, mRNA_7986 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|180787
Unique NamemRNA_7986
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1486
Alignment locationscaffold_22:337451..339386 +

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Properties
Property NameValue
TranscriptId180873
TrackFilteredModels2
ProteinId180787
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:337451..339386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|180787gene_7986Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|180787mRNA_7986-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7986CDS_7986Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7986 ID=mRNA_7986|Name=jgi.p|Nanoce1779_2|180787|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
CCCTCCCCTCCTCAGGTACCTCCAGTTTTACGCGGAATACACGGACAACT
GCCGCAAGGACGTCAAGATCAAGAGCAAGCGCCCGCTCCTGGCCTTCCTG
GCCCATACCAAAGCCTACATCCACCAGCTACAGGACACCCTCGTCACCTC
CTCCTCCTCCTCCTCCCCCTCCTCTTCCTCCGCCCCTCCCTCCCCCTCGT
TGTCCGCCGAGCCACCCGACCTGGACCTCCTGTACAAGCTGCACCAGATC
CGAGACGTCCTCGAGAGGAGTAAGATTGCCGGCTTCAACCGGAAGCTCCA
GCTCAAGGTGAGTCTTCCCTTCCTCCCTACCTCCCTCTCTCCTCGTTGAA
GAAGATGAAAGTCGGGCAGTTGCACTGATTCCTCTTTGCCATCCTTCCTC
CCTTCGTTCCTCCCTTCCTCCCTTTCTCCCTTCCTCCCTGACCACACTCA
GCCCCGCAGCTGGGAAAGCCACACTGTCCGCCTTCCCCACGAAGGCAGGG
AGGGCGAGGAGGAGGGCGGGAGGGAGGGCGAAGGCGGAGGGGAGAAGCAG
GTAGAGCGATGCGTGGAGCTGCAGCTGATTTTAAAGTGGGGGGGAGACCT
GACCAAGCTGGGCGAGAGGCAGGCGGAGAGGCTGGGGGAGAGATTCACAC
AGGCGATGTACCCAGATCCCTCCGGGGGGGGGATTCTCCGCCTCCATTCC
ACCTTCCGACACGACATGAAGATCAAGGCCTCGGACGAGGGGCGAGTGAT
GAAGACCGCCTCTGCCTTCACCAAGGGCATGCTGGAGCTCGAGGGGGAGC
TCACGCCCATCTTGGTGTCACTCGTGCATCGGGAAAAGGAGACCATCCAC
ATGCTCGACCCGTCGGGGAACGCCGAGATAAAGAAGAAGCTGGACGTGCG
TCCCTCCCTCCCCCCCCTCTCCCTTCCATTTCTTCTTTTGTCCACCCTCG
CGTCCGTCTCCTCGAGCCCGTCGTCATTCGGACACCCTATCTTTACACTT
GTCCCAAACACTTCTCTAAACCCTCCCGCCCTCCCTCCCTCAGGCCTGCA
AACACCACCTGCACCAGGTCATGCAGCAGGACGTGGACCTGACCGAGGCG
GAAATCGAGGCAATTGTGCCCGGCGGCCAGAAGAGCATCACGGAGACCCT
CCGCGCCGTCGGGAACCCGCGGACCGCCCTCTCCAAGATGACGGACCTGG
CCAACCAGCTGGCCAATCAGCTGGATGCCATGGTCAAGGCCCAAAACAAC
TTCACCAACCAGACCACCGGCGGCGGCACCTCGTCCTTCCTCCCGCTCTC
CTCCTCCACCCCTGCTCCTTCCTCCCTGATCTGCAGCGGGAGCAGCACCA
CCGCCGCCTCCTTCACTTCCGCCACTGCTGCCCTGCAGGAGGAGGGGAGT
AAAAAGGGAGGCGGGGAGGAAGGGGGGGAACAGGAGAGGGGGAATGAGGA
GATCGACTCTAGTCGAGCGGATAGCTTGTTCTTGTC
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protein sequence of jgi.p|Nanoce1779_2|180787

>mRNA_7986-protein ID=mRNA_7986-protein|Name=jgi.p|Nanoce1779_2|180787|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MYPDPSGGGILRLHSTFRHDMKIKASDEGRVMKTASAFTKGMLELEGELT
PILVSLVHREKETIHMLDPSGNAEIKKKLDVRPSLPPLSLPFLLLSTLAS
VSSSPSSFGHPIFTLVPNTSLNPPALPPSGLQTPPAPGHAAGRGPDRGGN
RGNCARRPEEHHGDPPRRREPADRPLQDDGPGQPAGQSAGCHGQGPKQLH
QPDHRRRHLVLPPALLLHPCSFLPDLQREQHHRRLLHFRHCCPAGGGE*
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mRNA from alignment at scaffold_22:337451..339386+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7986 ID=mRNA_7986|Name=jgi.p|Nanoce1779_2|180787|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_22:337451..339386+ (Nannochloropsis oceanica)
CCCTCCCCTCCTCAGGTACCTCCAGTTTTACGCGGAATACACGGACAACT
GCCGCAAGGACGTCAAGATCAAGAGCAAGCGCCCGCTCCTGGCCTTCCTG
GCCCATACCAAAGCCTACATCCACCAGCTACAGGACACCCTCGTCACCTC
CTCCTCCTCCTCCTCCCCCTCCTCTTCCTCCGCCCCTCCCTCCCCCTCGT
TGTCCGCCGAGCCACCCGACCTGGACCTCCTGTACAAGCTGCACCAGATC
CGAGACGTCCTCGAGAGGAGTAAGATTGCCGGCTTCAACCGGAAGCTCCA
GCTCAAGGTGAGTCTTCCCTTCCTCCCTACCTCCCTCTCTCCTCGTTGAA
GAAGATGAAAGTCGGGCAGTTGCACTGATTCCTCTTTGCCATCCTTCCTC
CCTTCGTTCCTCCCTTCCTCCCTTTCTCCCTTCCTCCCTGACCACACTCA
GCCCCGCAGCTGGGAAAGCCACACTGTCCGCCTTCCCCACGAAGGCAGGG
AGGGCGAGGAGGAGGGCGGGAGGGAGGGCGAAGGCGGAGGGGAGAAGCAG
GTAGAGCGATGCGTGGAGCTGCAGCTGATTTTAAAGTGGGGGGGAGACCT
GACCAAGCTGGGCGAGAGGCAGGCGGAGAGGCTGGGGGAGAGATTCACAC
AGGTGAGGGAGGGAGGGAGGGAGGGAGGGAAGAATCGGGGGCAAACGGAA
GTACAAATATCGGCAGATGGCCATTGACCTCCCTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCAGGCGATGTACCCAGATCCCTCCGGGGGGGGG
ATTCTCCGCCTCCATTCCACCTTCCGACACGACATGAAGATCAAGGTGGG
CAAGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAAGAAGAGTGGATGGA
GGAAAGAGACCTATTTAGCCTCCTCCCAATCGGCTCCCTCCGCTCCACCC
GAGGGGCGGCTAAGGCCGTGCTGGAGCCAAAGAGAGAGCCCAAACTCACT
CCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGGCC
TCGGACGAGGGGCGAGTGATGAAGACCGCCTCTGCCTTCACCAAGGGCAT
GCTGGAGCTCGAGGGGGAGCTCACGCCCATCTTGGTGTCACTCGTGCATC
GGGAAAAGGAGACCATCCACATGCTCGACCCGTCGGGGAACGCCGAGATA
AAGAAGAAGCTGGACGTGCGTCCCTCCCTCCCCCCCCTCTCCCTTCCATT
TCTTCTTTTGTCCACCCTCGCGTCCGTCTCCTCGAGCCCGTCGTCATTCG
GACACCCTATCTTTACACTTGTCCCAAACACTTCTCTAAACCCTCCCGCC
CTCCCTCCCTCAGGCCTGCAAACACCACCTGCACCAGGTCATGCAGCAGG
ACGTGGACCTGACCGAGGCGGAAATCGAGGCAATTGTGCCCGGCGGCCAG
AAGAGCATCACGGAGACCCTCCGCGCCGTCGGGAACCCGCGGACCGCCCT
CTCCAAGATGACGGACCTGGCCAACCAGCTGGCCAATCAGCTGGGTTCGT
CCTCCCTCCCTCCTCCCCGCCACCCCTCCCTCCCTCCCTTCCTCTCTCCT
CGTGTGGCACGCAACGAAACTCTTTCTTTCTCGGTACACACTTACCTGTC
CCCCCCCTCCCTCCCTCCCTCCAGATGCCATGGTCAAGGCCCAAAACAAC
TTCACCAACCAGACCACCGGCGGCGGCACCTCGTCCTTCCTCCCGCTCTC
CTCCTCCACCCCTGCTCCTTCCTCCCTGATCTGCAGCGGGAGCAGCACCA
CCGCCGCCTCCTTCACTTCCGCCACTGCTGCCCTGCAGGAGGAGGGGAGT
AAAAAGGGAGGCGGGGAGGAAGGGGGGGAACAGGAGAGGGGGAATGAGGA
GATCGACTCTAGTCGAGCGGATAGCTTGTTCTTGTC
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Coding sequence (CDS) from alignment at scaffold_22:337451..339386+

>mRNA_7986 ID=mRNA_7986|Name=jgi.p|Nanoce1779_2|180787|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at scaffold_22:337451..339386+ (Nannochloropsis oceanica)
ATGTACCCAGATCCCTCCGGGGGGGGGATTCTCCGCCTCCATTCCACCTT
CCGACACGACATGAAGATCAAGGCCTCGGACGAGGGGCGAGTGATGAAGA
CCGCCTCTGCCTTCACCAAGGGCATGCTGGAGCTCGAGGGGGAGCTCACG
CCCATCTTGGTGTCACTCGTGCATCGGGAAAAGGAGACCATCCACATGCT
CGACCCGTCGGGGAACGCCGAGATAAAGAAGAAGCTGGACGTGCGTCCCT
CCCTCCCCCCCCTCTCCCTTCCATTTCTTCTTTTGTCCACCCTCGCGTCC
GTCTCCTCGAGCCCGTCGTCATTCGGACACCCTATCTTTACACTTGTCCC
AAACACTTCTCTAAACCCTCCCGCCCTCCCTCCCTCAGGCCTGCAAACAC
CACCTGCACCAGGTCATGCAGCAGGACGTGGACCTGACCGAGGCGGAAAT
CGAGGCAATTGTGCCCGGCGGCCAGAAGAGCATCACGGAGACCCTCCGCG
CCGTCGGGAACCCGCGGACCGCCCTCTCCAAGATGACGGACCTGGCCAAC
CAGCTGGCCAATCAGCTGGATGCCATGGTCAAGGCCCAAAACAACTTCAC
CAACCAGACCACCGGCGGCGGCACCTCGTCCTTCCTCCCGCTCTCCTCCT
CCACCCCTGCTCCTTCCTCCCTGATCTGCAGCGGGAGCAGCACCACCGCC
GCCTCCTTCACTTCCGCCACTGCTGCCCTGCAGGAGGAGGGGAGTAAATG
TACCCAGATCCCTCCGGGGGGGGGATTCTCCGCCTCCATTCCACCTTCCG
ACACGACATGAAGATCAAGGCCTCGGACGAGGGGCGAGTGATGAAGACCG
CCTCTGCCTTCACCAAGGGCATGCTGGAGCTCGAGGGGGAGCTCACGCCC
ATCTTGGTGTCACTCGTGCATCGGGAAAAGGAGACCATCCACATGCTCGA
CCCGTCGGGGAACGCCGAGATAAAGAAGAAGCTGGACGTGCGTCCCTCCC
TCCCCCCCCTCTCCCTTCCATTTCTTCTTTTGTCCACCCTCGCGTCCGTC
TCCTCGAGCCCGTCGTCATTCGGACACCCTATCTTTACACTTGTCCCAAA
CACTTCTCTAAACCCTCCCGCCCTCCCTCCCTCAGGCCTGCAAACACCAC
CTGCACCAGGTCATGCAGCAGGACGTGGACCTGACCGAGGCGGAAATCGA
GGCAATTGTGCCCGGCGGCCAGAAGAGCATCACGGAGACCCTCCGCGCCG
TCGGGAACCCGCGGACCGCCCTCTCCAAGATGACGGACCTGGCCAACCAG
CTGGCCAATCAGCTGGATGCCATGGTCAAGGCCCAAAACAACTTCACCAA
CCAGACCACCGGCGGCGGCACCTCGTCCTTCCTCCCGCTCTCCTCCTCCA
CCCCTGCTCCTTCCTCCCTGATCTGCAGCGGGAGCAGCACCACCGCCGCC
TCCTTCACTTCCGCCACTGCTGCCCTGCAGGAGGAGGGGAGTAAATGTAC
CCAGATCCCTCCGGGGGGGGGATTCTCCGCCTCCATTCCACCTTCCGACA
CGACATGAAGATCAAGGCCTCGGACGAGGGGCGAGTGATGAAGACCGCCT
CTGCCTTCACCAAGGGCATGCTGGAGCTCGAGGGGGAGCTCACGCCCATC
TTGGTGTCACTCGTGCATCGGGAAAAGGAGACCATCCACATGCTCGACCC
GTCGGGGAACGCCGAGATAAAGAAGAAGCTGGACGTGCGTCCCTCCCTCC
CCCCCCTCTCCCTTCCATTTCTTCTTTTGTCCACCCTCGCGTCCGTCTCC
TCGAGCCCGTCGTCATTCGGACACCCTATCTTTACACTTGTCCCAAACAC
TTCTCTAAACCCTCCCGCCCTCCCTCCCTCAGGCCTGCAAACACCACCTG
CACCAGGTCATGCAGCAGGACGTGGACCTGACCGAGGCGGAAATCGAGGC
AATTGTGCCCGGCGGCCAGAAGAGCATCACGGAGACCCTCCGCGCCGTCG
GGAACCCGCGGACCGCCCTCTCCAAGATGACGGACCTGGCCAACCAGCTG
GCCAATCAGCTGGATGCCATGGTCAAGGCCCAAAACAACTTCACCAACCA
GACCACCGGCGGCGGCACCTCGTCCTTCCTCCCGCTCTCCTCCTCCACCC
CTGCTCCTTCCTCCCTGATCTGCAGCGGGAGCAGCACCACCGCCGCCTCC
TTCACTTCCGCCACTGCTGCCCTGCAGGAGGAGGGGAGTAA
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Synonyms
Publications