jgi.p|Nanoce1779_2|600762, mRNA_7981 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600762
Unique NamemRNA_7981
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1455
Alignment locationscaffold_22:321568..323588 +

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Properties
Property NameValue
TranscriptId600848
TrackFilteredModels2
ProteinId600762
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:321568..323588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600762gene_7981Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600762mRNA_7981-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7981CDS_7981Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7981 ID=mRNA_7981|Name=jgi.p|Nanoce1779_2|600762|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
CCCTCATTCAAGCAGACGTTTCCTCAGATCGGTTGCTCGTTACTGCCGTT
ACACAACTTGTCTCGCGGCCGCACGCCCATTATCTGTTAACAGTTATAAT
TATTGAAGGCTCACTTGTGGTGTGTCGCTCTTCTAAGTAAGAGAAACGGT
CCTGATAGCCAGTGTGTGAGTCTTGCTTGGCTGTACTTTGTCTCCCTCCC
CCCACAAATCGCATGGGCATCGGTCCCTTAGGCGCGCTTGATCACCCTAA
ACGCAGACGCCCACACAAAGGCAGCGTACGACCTAGCGCCCTCAGACACT
TCTCACCTTATTCCTACGGACGCATACGGACCGCATCACTCTCAGCCCTT
AGCCAATCCACACTCTGAATCATGCGCGCCTCCACCGCTTCGTTTGCCTC
TCTCTTCCTCGCCCTTGCCCCTGCGGCGATGGCCCGCACCGTTATGTTGG
GTGACTCCATGTTTGCCGGAGGCAGCAAGGTTAACGAATGGCTCCAGGAG
TGGGCCGGGCACAGCATTGAGAACATCGCCATCGTCGGCTCCTCACTCCA
CGAGGGTTGGACGAAAAGCATCCCGGAAGAGTACGCCGAACTGGACAAGA
CTATCATGCCCACCACCATTATTATGGATGGCGGAGGAAACGACGTCATT
TCGAAACGCAGCAACTGCGAGGCAATGGACGACGCCTGCAAGCAACAAAT
CGACGAGGCCGTCAACATCGGCGCGGATCTCCTGGAACAGATGCACAAAG
ACGGCGTGGCACATGTGATTTGGATGGGCTTTTTTTACATCGGGGGGTTG
GAGAAGGCCGTCGACTATGGCTCTGAGGCTGTGATTGAGGCGTGCGAGGC
GGCGAAGATTCATTGCGAGGTGGCTGACTTGAGGGACCTGCAGATTCCCC
GAGGGTGGGATGGCGTCCACCCGACAGAAGAGGGATATAAGATGTTGGCG
CAGAGGATTTGGGACGTGAAGTTGGACAACGATATCCCTATTTGAGGGGG
GTAAGCGTATGGAGGGGGTCACAAATGATCGGGACGACACGAGGACAGGA
TGAAATAAGCACTTATATTGAAGGAAAGAAGGGATGGAGTCCCTAGTCAA
GTGGCAAAAGCATGTGCATGTGTACTGGTAAGAACACAGATACACAGCGC
GAAGAAATGGGAACAATACTCGAGAGAGGTCCGAGAAGGAGGAATAAAAA
TATCTAGCATGAACGATGTATGTGTAAGATGACCTTAGCTCGGGGGTACA
GAAAAGAAGACGTTGTGTGTGCGAGTTCCTTGGCTCGCATAGTAGTAAAG
AGAACAGAATGGAAAAGACAAGGCGGAAAGACGGATAGACGTATAGCGTA
GCGTGTTGGAAAGTCCTCATGTTTTAAGGGAAAGGCCTATCGTTACAAGG
AGACACAATCATGTGTGGGACCGAAGAATAATATACCCAATTTTTTCCTT
CGGCC
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protein sequence of jgi.p|Nanoce1779_2|600762

>mRNA_7981-protein ID=mRNA_7981-protein|Name=jgi.p|Nanoce1779_2|600762|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MRASTASFASLFLALAPAAMARTVMLGDSMFAGGSKVNEWLQEWAGHSIE
NIAIVGSSLHEGWTKSIPEEYAELDKTIMPTTIIMDGGGNDVISKRSNCE
AMDDACKQQIDEAVNIGADLLEQMHKDGVAHVIWMGFFYIGGLEKAVDYG
SEAVIEACEAAKIHCEVADLRDLQIPRGWDGVHPTEEGYKMLAQRIWDVK
LDNDIPI*
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mRNA from alignment at scaffold_22:321568..323588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7981 ID=mRNA_7981|Name=jgi.p|Nanoce1779_2|600762|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at scaffold_22:321568..323588+ (Nannochloropsis oceanica)
CCCTCATTCAAGCAGACGTTTCCTCAGATCGGTTGCTCGTTACTGCCGTT
ACACAACTTGTCTCGCGGCCGCACGCCCATTATCTGTTAACAGTTATAAT
TATTGAAGGCTCACTTGTGGTGTGTCGCTCTTCTAAGTAAGAGAAACGGT
CCTGATAGCCAGTGTGTGAGTCTTGCTTGGCTGTACTTTGTCTCCCTCCC
CCCACAAATCGCATGGGCATCGGTCCCTTAGGCGCGCTTGATCACCCTAA
ACGCAGACGCCCACACAAAGGCAGCGTACGACCTAGCGCCCTCAGACACT
TCTCACCTTATTCCTACGGACGCATACGGACCGCATCACTCTCAGCCCTT
AGCCAATCCACACTCTGAATCATGCGCGCCTCCACCGCTTCGTTTGCCTC
TCTCTTCCTCGCCCTTGCCCCTGCGGCGATGGCCCGCACCGTTATGTTGG
GTGACTCCATGTTTGCCGGAGGCAGCAAGGTTAACGAATGGCTCCAGGTA
CGTCTTGAATATGCTCTGAGCTGTGTGTTGTCTGCTTATTTATCCCTGCG
TGTGCGTCCGCCTGGGAGACGTGGCCGTGGTTGTCACAATTGTTGTCCGA
ATCTCCCATACTCTGCTTCTTCTTGACACCGCAAATGCATGCCATCAAAA
TGATGCTATTGATTCGGTGTATTTTCTTTGTTGTTCCCTCTCTTTGTTTG
CTTTGCTGTCAAATTTCGTCCCCCTCTGGTGATACTTAGGTCGCTCGACA
CCCATGTACACAAGTGCAGCAATGCCCATGCCTGAATTTTCCCATTCTTA
TTCCACACGCATGCTTCTGAATACATCACTTCCCACCCTCCCTCTCTGCC
TCTTTGTCCTTCCTTCAGGAGTGGGCCGGGCACAGCATTGAGAACATCGC
CATCGTCGGCTCCTCACTCCACGAGGGTTGGACGAAAAGCATCCCGGAAG
AGTACGCCGAACTGGACAAGACTATCATGCCCACCACCATTATTATGGAT
GGCGGAGGAAACGACGTAAGTGAGGGAGGAAGTAAAGAGTGTCGCTTCCT
TTTTTATGTGAAGAAAAACAAATGGAAAGACGGAACCAGTAATGCTCTCT
GTTCCATGTATGTCTGTCAGGGGGAAAAGATGAGAAAAAGAAAAAAGACA
TGACCCGATCGATTATTTTACTTATCTATTTACGGCCCAAAATTGGAAAA
AAAATGATAGGTCATTTCGAAACGCAGCAACTGCGAGGCAATGGACGACG
CCTGCAAGCAACAAATCGACGAGGCCGTCAACATCGGCGCGGATCTCCTG
GAACAGATGCACAAAGACGGCGTGGCACATGTGATTTGGATGGGCTTTTT
TTACATCGGGGGGTTGGAGAAGGCCGTCGACTATGGCTCTGAGGCTGTGA
TTGAGGCGTGCGAGGCGGCGAAGATTCATTGCGAGGTGGCTGACTTGAGG
GACCTGCAGATTCCCCGAGGGTGGGATGGCGTCCACCCGACAGAAGAGGG
ATATAAGATGTTGGCGCAGAGGATTTGGGACGTGAAGTTGGACAACGATA
TCCCTATTTGAGGGGGGTAAGCGTATGGAGGGGGTCACAAATGATCGGGA
CGACACGAGGACAGGATGAAATAAGCACTTATATTGAAGGAAAGAAGGGA
TGGAGTCCCTAGTCAAGTGGCAAAAGCATGTGCATGTGTACTGGTAAGAA
CACAGATACACAGCGCGAAGAAATGGGAACAATACTCGAGAGAGGTCCGA
GAAGGAGGAATAAAAATATCTAGCATGAACGATGTATGTGTAAGATGACC
TTAGCTCGGGGGTACAGAAAAGAAGACGTTGTGTGTGCGAGTTCCTTGGC
TCGCATAGTAGTAAAGAGAACAGAATGGAAAAGACAAGGCGGAAAGACGG
ATAGACGTATAGCGTAGCGTGTTGGAAAGTCCTCATGTTTTAAGGGAAAG
GCCTATCGTTACAAGGAGACACAATCATGTGTGGGACCGAAGAATAATAT
ACCCAATTTTTTCCTTCGGCC
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Coding sequence (CDS) from alignment at scaffold_22:321568..323588+

>mRNA_7981 ID=mRNA_7981|Name=jgi.p|Nanoce1779_2|600762|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_22:321568..323588+ (Nannochloropsis oceanica)
ATGCGCGCCTCCACCGCTTCGTTTGCCTCTCTCTTCCTCGCCCTTGCCCC
TGCGGCGATGGCCCGCACCGTTATGTTGGGTGACTCCATGTTTGCCGGAG
GCAGCAAGGTTAACGAATGGCTCCAGGAGTGGGCCGGGCACAGCATTGAG
AACATCGCCATCGTCGGCTCCTCACTCCACGAGGGTTGGACGAAAAGCAT
CCCGGAAGAGTACGCCGAACTGGACAAGACTATCATGCCCACCACCATTA
TTATGGATGGCGGAGGAAACGACGTCATTTCGAAACGCAGCAACTGCGAG
GCAATGGACGACGCCTGCAAGCAACAAATCGACGAGGCCGTCAACATCGG
CGCGGATCTCCTGGAACAGATGCACAAAGACGGCGTGGCACATGTGATTT
GGATGGGCTTTTTTTACATCGGGGGGTTGGAGAAGGCCGTCGACTATGGC
TCTGAGGCTGTGATTGAGGCGTGCGAGGCGGCGAAGATTCATTGCGAGGT
GGCTGACTTGAGGGACCTGCAGATTCCCCGAGGGTGGGATGGCGTCCACC
CGACAGAAGAGGGATATAAGATGTTGGCGCAGAGGATTTGGGACGTGAAG
TTGGACAACGATATCCCTATTTGAATGCGCGCCTCCACCGCTTCGTTTGC
CTCTCTCTTCCTCGCCCTTGCCCCTGCGGCGATGGCCCGCACCGTTATGT
TGGGTGACTCCATGTTTGCCGGAGGCAGCAAGGTTAACGAATGGCTCCAG
GAGTGGGCCGGGCACAGCATTGAGAACATCGCCATCGTCGGCTCCTCACT
CCACGAGGGTTGGACGAAAAGCATCCCGGAAGAGTACGCCGAACTGGACA
AGACTATCATGCCCACCACCATTATTATGGATGGCGGAGGAAACGACGTC
ATTTCGAAACGCAGCAACTGCGAGGCAATGGACGACGCCTGCAAGCAACA
AATCGACGAGGCCGTCAACATCGGCGCGGATCTCCTGGAACAGATGCACA
AAGACGGCGTGGCACATGTGATTTGGATGGGCTTTTTTTACATCGGGGGG
TTGGAGAAGGCCGTCGACTATGGCTCTGAGGCTGTGATTGAGGCGTGCGA
GGCGGCGAAGATTCATTGCGAGGTGGCTGACTTGAGGGACCTGCAGATTC
CCCGAGGGTGGGATGGCGTCCACCCGACAGAAGAGGGATATAAGATGTTG
GCGCAGAGGATTTGGGACGTGAAGTTGGACAACGATATCCCTATTTGAAT
GCGCGCCTCCACCGCTTCGTTTGCCTCTCTCTTCCTCGCCCTTGCCCCTG
CGGCGATGGCCCGCACCGTTATGTTGGGTGACTCCATGTTTGCCGGAGGC
AGCAAGGTTAACGAATGGCTCCAGGAGTGGGCCGGGCACAGCATTGAGAA
CATCGCCATCGTCGGCTCCTCACTCCACGAGGGTTGGACGAAAAGCATCC
CGGAAGAGTACGCCGAACTGGACAAGACTATCATGCCCACCACCATTATT
ATGGATGGCGGAGGAAACGACGTCATTTCGAAACGCAGCAACTGCGAGGC
AATGGACGACGCCTGCAAGCAACAAATCGACGAGGCCGTCAACATCGGCG
CGGATCTCCTGGAACAGATGCACAAAGACGGCGTGGCACATGTGATTTGG
ATGGGCTTTTTTTACATCGGGGGGTTGGAGAAGGCCGTCGACTATGGCTC
TGAGGCTGTGATTGAGGCGTGCGAGGCGGCGAAGATTCATTGCGAGGTGG
CTGACTTGAGGGACCTGCAGATTCCCCGAGGGTGGGATGGCGTCCACCCG
ACAGAAGAGGGATATAAGATGTTGGCGCAGAGGATTTGGGACGTGAAGTT
GGACAACGATATCCCTATTTGA
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Synonyms
Publications