jgi.p|Nanoce1779_2|626164, mRNA_7980 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626164
Unique NamemRNA_7980
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1497
Alignment locationscaffold_22:320054..321550 +

Link to JBrowse

Properties
Property NameValue
TranscriptId626250
TrackFilteredModels2
ProteinId626164
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:320054..321550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626164gene_7980Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626164mRNA_7980-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7980CDS_7980Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7980 ID=mRNA_7980|Name=jgi.p|Nanoce1779_2|626164|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
GGGGGCGGGGTGGGGGCAAACAGCGCTGGGCTTGTATGAGGAGATGAAGG
AGGAAGGGATTGAGGCGCCCCCACAGGTGTACCGGGCTCTGGTCCAGGCG
TGCGGGAATGACGTGGTGCCAGTGGGGGAGGAAGATGAGGAGGAAGGAAA
GGAGAGAAAAGGGGAGCATAAGACAATCAGTATCAATCGAGGAAGAATCG
ATCGAAATCCCAAAAGCGCCAGCACTCTTAGCAGCACCAGCACGAGCACC
AGTAGCAGTAGCAGCAGTACCACCACCACGACCAAGATGACAACCGCCAA
AGTCTGGAACCTCCTTCAATCATGCCCCCCGGCACATCGGAACAATTTTG
TCTACACCGCTGCGGTCAAGGCGTGTGAACGCGGCAGAGACTGGCGCATG
GCCTTGCGTCTTTTGGAGGACATGAAGACAATCAGGCTGGAACCTGATGA
TGTCACGCACGGGCAGCTCTTGCACGTGTTGTCGTCCACGGGAAGGTGGG
CGGAGGCCTTGCAGGTCTTGGGTTCGATCAGGAAGAGAAACATCAGACAC
TACACCTCGGCGATTCGAGCGTGTGGCTCAGCGAAGGAGGAGGGGGAGGC
AGCAAGGCAGGGGAGGAGGTTGTACATGGAGTTGAAGGGGGAGGGGCTTG
TGCCGGATTTATTTGTGTACAATGTGGTGCTGCAGGCCTTGAGGGCAGGC
AGTAGCAGCTCTTCCTCCGTGGCGGACGATGCGCTAGCCCTGTACGACGA
GATGCGGGGCAAAACAATCAACCTCGGCAATAAGTCCTCGTGCGCTTCCT
TTTCCCCTTCTCCCCTTACCAATAAAGGCCATCTTCCTTATCCTCCGCCC
CCACCAGTGGCTCCAGATATTGTTACCATTACTGTCCTTATTTCTATTTT
AGAAAAACACGGGCGGCACGTCGAGGCTTTGCGTGTGTTTTCTGACGGCG
TCCGCGCCAACGTGTTGATGACCACGCGCCTAGACAGTTTATGGGAGCGG
GATTTATCACGGTTATCCTATCAATTGGTTCGTGCCGCCATAGATTATAC
ACTGAGAGAACTGGTAAAGGAATTCAAGCTCCAAAAGAAGGCGGCGGCAG
GGAGCAAGGAACCGAATGTCAACGATTTGGTCTTAATCACCGGGGTGGAC
TTGCGAAAGCGAGAGAAAGGAGGGGTAGCGACAGGAGGAGGGAATAGTAG
TAGTCGGGACGATCCCGAGACTCGGCAGGGCTTGGCGTGTCTGGTACTGA
GGGAGAAGGGGCTGGTACCGGCGGAACAGGAGGTTGGGGAGGCAGGCATC
TTGAAGGTGCCAGCCAAGGGTTTGAGGGAGTGGCTGGTTAAGCAATAATA
GTAGAGACCATCGAGGTGCAGAGAAAAAGGAAAGCAACAAAGTACTAAAT
TCTTGGTAACGGGGATGACTTCTGCGTTGAGAAGGACGGGCAGGAAAAGG
TTTGCAAGTATTTAAGATTTGACTAAATCGACGCGTCAAAGTCAGGA
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protein sequence of jgi.p|Nanoce1779_2|626164

>mRNA_7980-protein ID=mRNA_7980-protein|Name=jgi.p|Nanoce1779_2|626164|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MKEEGIEAPPQVYRALVQACGNDVVPVGEEDEEEGKERKGEHKTISINRG
RIDRNPKSASTLSSTSTSTSSSSSSTTTTTKMTTAKVWNLLQSCPPAHRN
NFVYTAAVKACERGRDWRMALRLLEDMKTIRLEPDDVTHGQLLHVLSSTG
RWAEALQVLGSIRKRNIRHYTSAIRACGSAKEEGEAARQGRRLYMELKGE
GLVPDLFVYNVVLQALRAGSSSSSSVADDALALYDEMRGKTINLGNKSSC
ASFSPSPLTNKGHLPYPPPPPVAPDIVTITVLISILEKHGRHVEALRVFS
DGVRANVLMTTRLDSLWERDLSRLSYQLVRAAIDYTLRELVKEFKLQKKA
AAGSKEPNVNDLVLITGVDLRKREKGGVATGGGNSSSRDDPETRQGLACL
VLREKGLVPAEQEVGEAGILKVPAKGLREWLVKQ*
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mRNA from alignment at scaffold_22:320054..321550+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7980 ID=mRNA_7980|Name=jgi.p|Nanoce1779_2|626164|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at scaffold_22:320054..321550+ (Nannochloropsis oceanica)
GGGGGCGGGGTGGGGGCAAACAGCGCTGGGCTTGTATGAGGAGATGAAGG
AGGAAGGGATTGAGGCGCCCCCACAGGTGTACCGGGCTCTGGTCCAGGCG
TGCGGGAATGACGTGGTGCCAGTGGGGGAGGAAGATGAGGAGGAAGGAAA
GGAGAGAAAAGGGGAGCATAAGACAATCAGTATCAATCGAGGAAGAATCG
ATCGAAATCCCAAAAGCGCCAGCACTCTTAGCAGCACCAGCACGAGCACC
AGTAGCAGTAGCAGCAGTACCACCACCACGACCAAGATGACAACCGCCAA
AGTCTGGAACCTCCTTCAATCATGCCCCCCGGCACATCGGAACAATTTTG
TCTACACCGCTGCGGTCAAGGCGTGTGAACGCGGCAGAGACTGGCGCATG
GCCTTGCGTCTTTTGGAGGACATGAAGACAATCAGGCTGGAACCTGATGA
TGTCACGCACGGGCAGCTCTTGCACGTGTTGTCGTCCACGGGAAGGTGGG
CGGAGGCCTTGCAGGTCTTGGGTTCGATCAGGAAGAGAAACATCAGACAC
TACACCTCGGCGATTCGAGCGTGTGGCTCAGCGAAGGAGGAGGGGGAGGC
AGCAAGGCAGGGGAGGAGGTTGTACATGGAGTTGAAGGGGGAGGGGCTTG
TGCCGGATTTATTTGTGTACAATGTGGTGCTGCAGGCCTTGAGGGCAGGC
AGTAGCAGCTCTTCCTCCGTGGCGGACGATGCGCTAGCCCTGTACGACGA
GATGCGGGGCAAAACAATCAACCTCGGCAATAAGTCCTCGTGCGCTTCCT
TTTCCCCTTCTCCCCTTACCAATAAAGGCCATCTTCCTTATCCTCCGCCC
CCACCAGTGGCTCCAGATATTGTTACCATTACTGTCCTTATTTCTATTTT
AGAAAAACACGGGCGGCACGTCGAGGCTTTGCGTGTGTTTTCTGACGGCG
TCCGCGCCAACGTGTTGATGACCACGCGCCTAGACAGTTTATGGGAGCGG
GATTTATCACGGTTATCCTATCAATTGGTTCGTGCCGCCATAGATTATAC
ACTGAGAGAACTGGTAAAGGAATTCAAGCTCCAAAAGAAGGCGGCGGCAG
GGAGCAAGGAACCGAATGTCAACGATTTGGTCTTAATCACCGGGGTGGAC
TTGCGAAAGCGAGAGAAAGGAGGGGTAGCGACAGGAGGAGGGAATAGTAG
TAGTCGGGACGATCCCGAGACTCGGCAGGGCTTGGCGTGTCTGGTACTGA
GGGAGAAGGGGCTGGTACCGGCGGAACAGGAGGTTGGGGAGGCAGGCATC
TTGAAGGTGCCAGCCAAGGGTTTGAGGGAGTGGCTGGTTAAGCAATAATA
GTAGAGACCATCGAGGTGCAGAGAAAAAGGAAAGCAACAAAGTACTAAAT
TCTTGGTAACGGGGATGACTTCTGCGTTGAGAAGGACGGGCAGGAAAAGG
TTTGCAAGTATTTAAGATTTGACTAAATCGACGCGTCAAAGTCAGGA
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Coding sequence (CDS) from alignment at scaffold_22:320054..321550+

>mRNA_7980 ID=mRNA_7980|Name=jgi.p|Nanoce1779_2|626164|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_22:320054..321550+ (Nannochloropsis oceanica)
ATGAAGGAGGAAGGGATTGAGGCGCCCCCACAGGTGTACCGGGCTCTGGT
CCAGGCGTGCGGGAATGACGTGGTGCCAGTGGGGGAGGAAGATGAGGAGG
AAGGAAAGGAGAGAAAAGGGGAGCATAAGACAATCAGTATCAATCGAGGA
AGAATCGATCGAAATCCCAAAAGCGCCAGCACTCTTAGCAGCACCAGCAC
GAGCACCAGTAGCAGTAGCAGCAGTACCACCACCACGACCAAGATGACAA
CCGCCAAAGTCTGGAACCTCCTTCAATCATGCCCCCCGGCACATCGGAAC
AATTTTGTCTACACCGCTGCGGTCAAGGCGTGTGAACGCGGCAGAGACTG
GCGCATGGCCTTGCGTCTTTTGGAGGACATGAAGACAATCAGGCTGGAAC
CTGATGATGTCACGCACGGGCAGCTCTTGCACGTGTTGTCGTCCACGGGA
AGGTGGGCGGAGGCCTTGCAGGTCTTGGGTTCGATCAGGAAGAGAAACAT
CAGACACTACACCTCGGCGATTCGAGCGTGTGGCTCAGCGAAGGAGGAGG
GGGAGGCAGCAAGGCAGGGGAGGAGGTTGTACATGGAGTTGAAGGGGGAG
GGGCTTGTGCCGGATTTATTTGTGTACAATGTGGTGCTGCAGGCCTTGAG
GGCAGGCAGTAGCAGCTCTTCCTCCGTGGCGGACGATGCGCTAGCCCTGT
ACGACGAGATGCGGGGCAAAACAATCAACCTCGGCAATAAGTCCTCGTGC
GCTTCCTTTTCCCCTTCTCCCCTTACCAATAAAGGCCATCTTCCTTATCC
TCCGCCCCCACCAGTGGCTCCAGATATTGTTACCATTACTGTCCTTATTT
CTATTTTAGAAAAACACGGGCGGCACGTCGAGGCTTTGCGTGTGTTTTCT
GACGGCGTCCGCGCCAACGTGTTGATGACCACGCGCCTAGACAGTTTATG
GGAGCGGGATTTATCACGGTTATCCTATCAATTGGTTCGTGCCGCCATAG
ATTATACACTGAGAGAACTGGTAAAGGAATTCAAGCTCCAAAAGAAGGCG
GCGGCAGGGAGCAAGGAACCGAATGTCAACGATTTGGTCTTAATCACCGG
GGTGGACTTGCGAAAGCGAGAGAAAGGAGGGGTAGCGACAGGAGGAGGGA
ATAGTAGTAGTCGGGACGATCCCGAGACTCGGCAGGGCTTGGCGTGTCTG
GTACTGAGGGAGAAGGGGCTGGTACCGGCGGAACAGGAGGTTGGGGAGGC
AGGCATCTTGAAGGTGCCAGCCAAGGGTTTGAGGGAGTGGCTGGTTAAGC
AATAA
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Synonyms
Publications