jgi.p|Nanoce1779_2|574181, mRNA_798 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574181
Unique Name	mRNA_798
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1862
Alignment location	scaffold_2:457679..459949 -

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Properties


Property Name	Value
TranscriptId	574267
Track	FilteredModels2
ProteinId	574181

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:457679..459949 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574181	gene_798	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574181	mRNA_798-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_798	CDS_798	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:457679..459949-
coding sequence from alignment at scaffold_2:457679..459949-

mRNA sequence

>mRNA_798 ID=mRNA_798|Name=jgi.p|Nanoce1779_2|574181|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp
GCACTGGAGAGCTTCATGACTAATAGCTAGGCGCTGGGACAGTGGCTGTG
CGAGTGTCGACGTGGGTGGTGGGTGGGGACGGGTCAGAGCTGATGCAGTC
TAGGGCGCGCTCTCATTGTCATGCAGTCAACACCAGGTCAGACGCAGAGA
ACGACATGTGTCGTATGGAGTGCGAGCCAGAGCGGTGGGGCACATTAAAC
CTCCTGTCCCGCTCCCTTGGTTGACCGTGTGCCTTCACAAGTACCCGTAA
CATTTGCCGGGCGAAGGCCAGATTGTCAGGCTGAAAGCAAAGGTTACGAC
CGCACAAGAATCAACTCATCAGAGCGGCATTGTCAGAATGGGATGCAGGT
GCCCAGTTTTTTCTTCAAGAGAGGCTCCTTTGCGCGAATGGCCATCGATT
TGAAGGAGGGCGCTGCCTCGCCACTTCTTGGCCCTTCGCAGTTATCGTAT
CACTTCACTTCCTGCCCTCGCTTCACACACACTTTCACTGACCGTCATCC
TCTTTCTGTCGGCCATTGTCGTGGAACACAGGCAGGCCTTGGGCAGGAGC
TTTCCAAGGACTCGCGCTGCTTGTATCATCAGCTCACCAACGGTTACTGC
CACACTTTGCTGCCACCCACTCATGGCGTGCACCCGAAGGGAGGTCGGCG
CCTCAAGAAGACGAATGGCTGCCAATGGTGTCGTGATCTTGGCATGTATG
ATGGGCGTGAGTACAGCCTTCCTCCTCCCCTCTGCCCCTCTCTCCAGCAG
CCGCAGCAGCAGCAGCAGAAGATGTCCACAGATCACCTTCTCCCTCTCCT
CCTCCTCCGTCACCTGTTTGCGTGCCTCAGCCTTTGACAATCTAGGCATG
CCCCAAATCAGACCACGCGGCGCCCGCGACGAACCCCAAGAAGAGGAAGC
CGTTGTCATCACCGGAGGGGAACATGAGGTCTTTCCCACCCGGCCCGTCC
CTGAGCTGATAACCCTCAACGCCTTTGGCCTCTTAATCGAGCCGACGGAC
GAAGTGGGATTGTTCTGCAGGGAGGTGTTCATGAAGCATTATGATTACAA
GGTGCGTCTACCGCGGCCTGAGCTGTTCACGCAGACTTTCGATTTGGCTT
ATGAAGCCCGCCGGACCGAGTTTCCCAATTTTGGCGCGAATGCAGGGATA
TCGACGGAGGAGTGGTGGGCACCCATTTTTTACAAGACTTTCTTGGACCT
GGGATTCCCAAAGGAGGATTTGGATGAAGTCTTCGTGGGTGTATTTGAAG
AGTTGTTTTATGAATCGTTGACTAGTGAGTGGGCGTGGGAACCAGTAGAG
GACGTGTTGCCCATGTTGGACAAGTTGCAGGAGTGGCGCATGGCAGGTGG
GCCGAAGTTAGGGGTGGTGTGTGATTACGATGAGCGTTTGTCGACAATAT
TGGAGAATCTTGACATGCTACACTACTTCGATGTGGTTGTCAATTCTAGG
GAGGCGGGGGCAGGGAAGCCGGACAAGGCACCGTTCCTGTTGGCGATGGA
GAAGGCGGAGGTAAAGGATCCGAAGAAAGTGATGCATTTGGGGTTGGATT
TTGATCACGATGTGGTAGGGGCGGCCAAGGCGGGAATGGATAGTGTTTGG
GTCGTTATGCCGGCTTATGACCAGTTGGAGCCAGAGCAGGAGGTGCAACA
GCTGTCTTTCACCAAGATCGGGGATTTGGAAGCGGTGTTGTCGATGTATG
AAAGGAGTGACCCGGAGAGATTGATTACCACGACGTACAAAAATAAGAAT
AGGCAAGGGCATTTGCGGGTGCAGTATTAGGAGGGGAGGAGGAGGGGGAG
GGAGGGACGGAAGGATAGAGACGGAGAAAGACATGATATAGTGCGACGGA
GTGGCAACTCAT

protein sequence of jgi.p|Nanoce1779_2|574181

>mRNA_798-protein ID=mRNA_798-protein|Name=jgi.p|Nanoce1779_2|574181|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MACTRREVGASRRRMAANGVVILACMMGVSTAFLLPSAPLSSSRSSSSRR
CPQITFSLSSSSVTCLRASAFDNLGMPQIRPRGARDEPQEEEAVVITGGE
HEVFPTRPVPELITLNAFGLLIEPTDEVGLFCREVFMKHYDYKVRLPRPE
LFTQTFDLAYEARRTEFPNFGANAGISTEEWWAPIFYKTFLDLGFPKEDL
DEVFVGVFEELFYESLTSEWAWEPVEDVLPMLDKLQEWRMAGGPKLGVVC
DYDERLSTILENLDMLHYFDVVVNSREAGAGKPDKAPFLLAMEKAEVKDP
KKVMHLGLDFDHDVVGAAKAGMDSVWVVMPAYDQLEPEQEVQQLSFTKIG
DLEAVLSMYERSDPERLITTTYKNKNRQGHLRVQY*

mRNA from alignment at scaffold_2:457679..459949-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_798 ID=mRNA_798|Name=jgi.p|Nanoce1779_2|574181|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at scaffold_2:457679..459949- (Nannochloropsis oceanica)
GCACTGGAGAGCTTCATGACTAATAGCTAGGCGCTGGGACAGTGGCTGTG
CGAGTGTCGACGTGGGTGGTGGGTGGGGACGGGTCAGAGCTGATGCAGTC
TAGGGCGCGCTCTCATTGTCATGCAGTCAACACCAGGTCAGACGCAGAGA
ACGACATGTGTCGTATGGAGTGCGAGCCAGAGCGGTGGGGCACATTAAAC
CTCCTGTCCCGCTCCCTTGGTTGACCGTGTGCCTTCACAAGTACCCGTAA
CATTTGCCGGGCGAAGGCCAGATTGTCAGGCTGAAAGCAAAGGTTACGAC
CGCACAAGAATCAACTCATCAGAGCGGCATTGTCAGAATGGGATGCAGGT
GCCCAGTTTTTTCTTCAAGAGAGGCTCCTTTGCGCGAATGGCCATCGATT
TGAAGGAGGGCGCTGCCTCGCCACTTCTTGGCCCTTCGCAGTTATCGTAT
CACTTCACTTCCTGCCCTCGCTTCACACACACTTTCACTGACCGTCATCC
TCTTTCTGTCGGCCATTGTCGTGGAACACAGGCAGGCCTTGGGCAGGAGC
TTTCCAAGGACTCGCGCTGCTTGTATCATCAGCTCACCAACGGTTACTGC
CACACTTTGCTGCCACCCACTCATGGCGTGCACCCGAAGGGAGGTCGGCG
CCTCAAGAAGACGAATGGCTGCCAATGGTGTCGTGATCTTGGCATGTATG
ATGGTACGTTGGTTGAGTGTATTTTGGGTGGGTGTTGGAGTCATGAGATA
GGGGACGGAGAGGCCGTCTCAAGGAAAAGAGGCGCTGCCTCGAGGTTTGC
CGATTGCCGAGGGTAGGTAATACTTGCACTCCTGATGAGAGCAATGGGGT
ACATCTGGACATCTTCTGGAGCAGCGTAGGGTGATTGCGAAGTATACAGG
TGTCTTTGCATGTTTTGTTTGGCAGGTGTCGAACGGTGTACTTGACAGGA
GGACGGAAGTAAAGGAGACAGGCAAACAGGCCCCATATTTCAATTAGAGG
GGCCGTCCTCGTGAGAATTTCGACCTTACTGAGAGGAGGTGGTTGTAAGC
TGTTGTCCTGCAGTCGTCCGCCACATTCTCACACGAAATTATGCCTCCAA
CCAAATCCACAGGGCGTGAGTACAGCCTTCCTCCTCCCCTCTGCCCCTCT
CTCCAGCAGCCGCAGCAGCAGCAGCAGAAGATGTCCACAGATCACCTTCT
CCCTCTCCTCCTCCTCCGTCACCTGTTTGCGTGCCTCAGCCTTTGACAAT
CTAGGCATGCCCCAAATCAGACCACGCGGCGCCCGCGACGAACCCCAAGA
AGAGGAAGCCGTTGTCATCACCGGAGGGGAACATGAGGTCTTTCCCACCC
GGCCCGTCCCTGAGCTGATAACCCTCAACGCCTTTGGCCTCTTAATCGAG
CCGACGGACGAAGTGGGATTGTTCTGCAGGGAGGTGTTCATGAAGCATTA
TGATTACAAGGTGCGTCTACCGCGGCCTGAGCTGTTCACGCAGACTTTCG
ATTTGGCTTATGAAGCCCGCCGGACCGAGTTTCCCAATTTTGGCGCGAAT
GCAGGGATATCGACGGAGGAGTGGTGGGCACCCATTTTTTACAAGACTTT
CTTGGACCTGGGATTCCCAAAGGAGGATTTGGATGAAGTCTTCGTGGGTG
TATTTGAAGAGTTGTTTTATGAATCGTTGACTAGTGAGTGGGCGTGGGAA
CCAGTAGAGGACGTGTTGCCCATGTTGGACAAGTTGCAGGAGTGGCGCAT
GGCAGGTGGGCCGAAGTTAGGGGTGGTGTGTGATTACGATGAGCGTTTGT
CGACAATATTGGAGAATCTTGACATGCTACACTACTTCGATGTGGTTGTC
AATTCTAGGGAGGCGGGGGCAGGGAAGCCGGACAAGGCACCGTTCCTGTT
GGCGATGGAGAAGGCGGAGGTAAAGGATCCGAAGAAAGTGATGCATTTGG
GGTTGGATTTTGATCACGATGTGGTAGGGGCGGCCAAGGCGGGAATGGAT
AGTGTTTGGGTCGTTATGCCGGCTTATGACCAGTTGGAGCCAGAGCAGGA
GGTGCAACAGCTGTCTTTCACCAAGATCGGGGATTTGGAAGCGGTGTTGT
CGATGTATGAAAGGAGTGACCCGGAGAGATTGATTACCACGACGTACAAA
AATAAGAATAGGCAAGGGCATTTGCGGGTGCAGTATTAGGAGGGGAGGAG
GAGGGGGAGGGAGGGACGGAAGGATAGAGACGGAGAAAGACATGATATAG
TGCGACGGAGTGGCAACTCAT

Coding sequence (CDS) from alignment at scaffold_2:457679..459949-

>mRNA_798 ID=mRNA_798|Name=jgi.p|Nanoce1779_2|574181|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_2:457679..459949- (Nannochloropsis oceanica)
GGCGTGAGTACAGCCTTCCTCCTCCCCTCTGCCCCTCTCTCCAGCAGCCG
CAGCAGCAGCAGCAGAAGATGTCCACAGATCACCTTCTCCCTCTCCTCCT
CCTCCGTCACCTGTTTGCGTGCCTCAGCCTTTGACAATCTAGGCATGCCC
CAAATCAGACCACGCGGCGCCCGCGACGAACCCCAAGAAGAGGAAGCCGT
TGTCATCACCGGAGGGGAACATGAGGTCTTTCCCACCCGGCCCGTCCCTG
AGCTGATAACCCTCAACGCCTTTGGCCTCTTAATCGAGCCGACGGACGAA
GTGGGATTGTTCTGCAGGGAGGTGTTCATGAAGCATTATGATTACAAGGT
GCGTCTACCGCGGCCTGAGCTGTTCACGCAGACTTTCGATTTGGCTTATG
AAGCCCGCCGGACCGAGTTTCCCAATTTTGGCGCGAATGCAGGGATATCG
ACGGAGGAGTGGTGGGCACCCATTTTTTACAAGACTTTCTTGGACCTGGG
ATTCCCAAAGGAGGATTTGGATGAAGTCTTCGTGGGTGTATTTGAAGAGT
TGTTTTATGAATCGTTGACTAGTGAGTGGGCGTGGGAACCAGTAGAGGAC
GTGTTGCCCATGTTGGACAAGTTGCAGGAGTGGCGCATGGCAGGTGGGCC
GAAGTTAGGGGTGGTGTGTGATTACGATGAGCGTTTGTCGACAATATTGG
AGAATCTTGACATGCTACACTACTTCGATGTGGTTGTCAATTCTAGGGAG
GCGGGGGCAGGGAAGCCGGACAAGGCACCGTTCCTGTTGGCGATGGAGAA
GGCGGAGGTAAAGGATCCGAAGAAAGTGATGCATTTGGGGTTGGATTTTG
ATCACGATGTGGTAGGGGCGGCCAAGGCGGGAATGGATAGTGTTTGGGTC
GTTATGCCGGCTTATGACCAGTTGGAGCCAGAGCAGGAGGTGCAACAGCT
GTCTTTCACCAAGATCGGGGATTTGGAAGCGGTGTTGTCGATGTATGAAA
GGAGTGACCCGGAGAGATTGATTACCACGACGTACAAAAATAAGAATAGG
CAAGGGCATTTGCGGGTGCAGTATTAGATGGCGTGCACCCGAAGGGAGGT
CGGCGCCTCAAGAAGACGAATGGCTGCCAATGGTGTCGTGATCTTGGCAT
GTATGATGGGCGTGAGTACAGCCTTCCTCCTCCCCTCTGCCCCTCTCTCC
AGCAGCCGCAGCAGCAGCAGCAGAAGATGTCCACAGATCACCTTCTCCCT
CTCCTCCTCCTCCGTCACCTGTTTGCGTGCCTCAGCCTTTGACAATCTAG
GCATGCCCCAAATCAGACCACGCGGCGCCCGCGACGAACCCCAAGAAGAG
GAAGCCGTTGTCATCACCGGAGGGGAACATGAGGTCTTTCCCACCCGGCC
CGTCCCTGAGCTGATAACCCTCAACGCCTTTGGCCTCTTAATCGAGCCGA
CGGACGAAGTGGGATTGTTCTGCAGGGAGGTGTTCATGAAGCATTATGAT
TACAAGGTGCGTCTACCGCGGCCTGAGCTGTTCACGCAGACTTTCGATTT
GGCTTATGAAGCCCGCCGGACCGAGTTTCCCAATTTTGGCGCGAATGCAG
GGATATCGACGGAGGAGTGGTGGGCACCCATTTTTTACAAGACTTTCTTG
GACCTGGGATTCCCAAAGGAGGATTTGGATGAAGTCTTCGTGGGTGTATT
TGAAGAGTTGTTTTATGAATCGTTGACTAGTGAGTGGGCGTGGGAACCAG
TAGAGGACGTGTTGCCCATGTTGGACAAGTTGCAGGAGTGGCGCATGGCA
GGTGGGCCGAAGTTAGGGGTGGTGTGTGATTACGATGAGCGTTTGTCGAC
AATATTGGAGAATCTTGACATGCTACACTACTTCGATGTGGTTGTCAATT
CTAGGGAGGCGGGGGCAGGGAAGCCGGACAAGGCACCGTTCCTGTTGGCG
ATGGAGAAGGCGGAGGTAAAGGATCCGAAGAAAGTGATGCATTTGGGGTT
GGATTTTGATCACGATGTGGTAGGGGCGGCCAAGGCGGGAATGGATAGTG
TTTGGGTCGTTATGCCGGCTTATGACCAGTTGGAGCCAGAGCAGGAGGTG
CAACAGCTGTCTTTCACCAAGATCGGGGATTTGGAAGCGGTGTTGTCGAT
GTATGAAAGGAGTGACCCGGAGAGATTGATTACCACGACGTACAAAAATA
AGAATAGGCAAGGGCATTTGCGGGTGCAGTATTAGATGGCGTGCACCCGA
AGGGAGGTCGGCGCCTCAAGAAGACGAATGGCTGCCAATGGTGTCGTGAT
CTTGGCATGTATGATG

Synonyms

Publications