jgi.p|Nanoce1779_2|600758, mRNA_7979 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600758
Unique Name	mRNA_7979
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2421
Alignment location	scaffold_22:317633..320053 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600844
Track	FilteredModels2
ProteinId	600758

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:317633..320053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600758	gene_7979	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600758	mRNA_7979-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7979	CDS_7979	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:317633..320053+
coding sequence from alignment at scaffold_22:317633..320053+

mRNA sequence

>mRNA_7979 ID=mRNA_7979|Name=jgi.p|Nanoce1779_2|600758|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp
ACAGAGCAGCATCAGGAGGAGGAGCAAGAGCAGGTGCAGCACGAGCAGCA
TGCCTTTATCAACTTATCCTGCAGGCATGAGGCGCTAGTCAAAAACAAAC
GCAAGGCGGCAAGCTCAACCAGGTGTTGATGACGATGCTCCGGAGGACCA
CGGTAAGATGCGGGTTGCGCCTCTACGGCCTGCTCGTCGTCCTACAGGCA
TTGTCTATGGTGAGTGGATGGAGAATCGGGGCTGCGACTGCCTTTGTATT
GCCCCAGGTAAGCGCAGGCCGTGGGACTCACAAGAAAACCAATTCTTTTC
GCTTGATTGGACACGCCACCTCACGTACCTGCACTATCGCTCATAGGCCA
CGCCATTGCCCCATCTCAAAGGCCGCTTATGGAGCACCGGGAGGAGTAGA
CAAGTCTGCGTCCAGCGCGAAAGCAGCGGCAGCAGCAGCAGCAGCAGCAG
CAGCATCACCACCACCAAGAAATCTACAGCACCACCACCACCACCGCCAC
CTCCTCGCACCCTCCCTCCCCCTCCCTTCTTCTCCTCCTCTAGGCGCCCG
TTCATCTACGGCGACGGCGATGCCAAGGCCGTCAAATGGGTGAAGAAATC
TCCTGGTTCTATGTTGACCGAAATTGCCTTCCAGGAAAAAGTGCAGGAAT
TGCGTTTTCTCACTAAATGGGGAGAAAGGGATAGTTCTAGTTGCAGCAGG
ACTTTAGAGGAAGGAGGGAATAGAGGGGGGGCAAGCATAAACAGTATATC
GACTACGGGAGCAGCAGAAGCCGCTCTGGCTGCCTTGGAGTCCCTCCAAT
CCCAAGCCATCCCCCCCCTGGAAATCTACAACGACGTGTTCGCTTGTTGT
GTGGTAGCCTCGGACTGGGCCCGTGCCCTCACCGTTCTCTCCCACATCGT
CTCTTTCGCAGGTCTCACCCCCACTTTAGACACATACAAAGCCGCCCTCG
ACGCTACCCATCAAATCAAGGACGAGGGAGGGAGGGAGAGAGGGCAGGGA
GGAAAATGGGAGAAAGCGTTGCGGCTCTATGAGGCGATGCTTGCGGCAGG
TGTGCAGCCAGATGGACGGATTATTGAAGGGGTACTGTTGGAGCTGGCCC
AGGTGGGGATGCTGAAGAAAGGGCTAGAGGTGATCGAGGAGGGGAAAGGA
CTGGGGGTGAGAAGTACCAAGTGGATGTACCGATTGTTGCTTGGGGTGCT
GTTTCGTGCGCCCTCGCCCGCAGTGGCAGCAGGAGCAGTAGCCACAGAAT
TTGAAAGAGGAACTGCTGCTCCTGCGGGTGCTTCACATCAGCAGCAACGG
GGTAAGAAACGAAAGCAAGCGCAGCCGCCTGTCGCCCCCCTGCCTCCCTC
CCTTTCTCCTCCCCTTGCCGCGGACTACTACGCATCGGCATTGGATGCTT
TGTACGGAATCGATCCTATGACGGGGTCACCCAGGCACAGGGTTGATGAT
GCGGCATGTATCTTCTTGGTGGAGGAAGTGTTTCGACGGAGGGGCGGGAA
GTTGACGTGGAAAGGGATAAGGCCCATCGTGAACTTGTTCTTGAGGGATG
TGACTGCTCATGGCGAGGTCGGCGCTGCTGCTGCTGCTACTACTTCTATC
GATGGCGCTACGGCGGCGGAAGTTGATGAAGGGGAAAGGAAAGAGTCGGC
CAATTCCTCCACGTCCACTTCCGCGTTCTCCGAGTCAGCCTTCCTCCTCC
TTCTCTCCCTCTGTAAGGCCGCCCAAGACGGAGAGCCCGGCCGGGAACCT
GCAGGAGGTGCGCTTGATGGTGCCCTGCTCATCCTCTCCTCCATGGTGGA
GCAAGGGAAGGGAAACACCCTCGCCTTCAACATGGTCCTTAAAATGTGCG
AACGTCGTCGTGACGCCCGCCGGGCCCTTCTCCTTCTTTCCCAGATGGAG
TCCCTGCCCTCCCTCCCTCCAGACCTCGTGTCCTACAACACCGTTATTTC
GGCATGTGCCCGAGGAAACCGGCCCCAAGACGCCCAGAGACTGGTCAAGG
CAATGGAGCAGAGGGCTAGTAGGAGTAGTAATAGTAGCAGCACTAGAGGA
GCGGAGGGAGGAAGGGTTGTCCCCTCCCTTGTGACTTACAACTCCCTCTT
GGCGGCCCTTGCCCAGGGGGGTCAGTGGAAGGAGGCCATGGCGGTATTGC
AGACGCTGAGGAGGAAGGGGCTGAAGGCTGACGTGATTACCTACACGAGC
TTGATCCAGGCTTGCTCTAAAGCGAAACCCTATCCTCAGGTGAAAAAGGC
GTTGTTTTTCCTGGATGAGATGCGTGGGGGGGGAATGGAGAAAGGGGAAG
AGGGTAGAAGAGGTGGTAGGTTTGCTTACAGTGACAAAGGCAGGGAGGCA
GGAGGGATTGGGGTGAGACCGGATGCGGTTGCTTATGCAGCGGCAATCGA
GGCATGTGCGAGGGGAGGGGT

protein sequence of jgi.p|Nanoce1779_2|600758

>mRNA_7979-protein ID=mRNA_7979-protein|Name=jgi.p|Nanoce1779_2|600758|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MARSALLLLLLLLSMALRRRKLMKGKGKSRPIPPRPLPRSPSQPSSSFSP
SVRPPKTESPAGNLQEVRLMVPCSSSPPWWSKGRETPSPSTWSLKCANVV
VTPAGPFSFFPRWSPCPPSLQTSCPTTPLFRHVPEETGPKTPRDWSRQWS
RGLVGVVIVAALEERREEGLSPPL*

mRNA from alignment at scaffold_22:317633..320053+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7979 ID=mRNA_7979|Name=jgi.p|Nanoce1779_2|600758|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at scaffold_22:317633..320053+ (Nannochloropsis oceanica)
ACAGAGCAGCATCAGGAGGAGGAGCAAGAGCAGGTGCAGCACGAGCAGCA
TGCCTTTATCAACTTATCCTGCAGGCATGAGGCGCTAGTCAAAAACAAAC
GCAAGGCGGCAAGCTCAACCAGGTGTTGATGACGATGCTCCGGAGGACCA
CGGTAAGATGCGGGTTGCGCCTCTACGGCCTGCTCGTCGTCCTACAGGCA
TTGTCTATGGTGAGTGGATGGAGAATCGGGGCTGCGACTGCCTTTGTATT
GCCCCAGGTAAGCGCAGGCCGTGGGACTCACAAGAAAACCAATTCTTTTC
GCTTGATTGGACACGCCACCTCACGTACCTGCACTATCGCTCATAGGCCA
CGCCATTGCCCCATCTCAAAGGCCGCTTATGGAGCACCGGGAGGAGTAGA
CAAGTCTGCGTCCAGCGCGAAAGCAGCGGCAGCAGCAGCAGCAGCAGCAG
CAGCATCACCACCACCAAGAAATCTACAGCACCACCACCACCACCGCCAC
CTCCTCGCACCCTCCCTCCCCCTCCCTTCTTCTCCTCCTCTAGGCGCCCG
TTCATCTACGGCGACGGCGATGCCAAGGCCGTCAAATGGGTGAAGAAATC
TCCTGGTTCTATGTTGACCGAAATTGCCTTCCAGGAAAAAGTGCAGGAAT
TGCGTTTTCTCACTAAATGGGGAGAAAGGGATAGTTCTAGTTGCAGCAGG
ACTTTAGAGGAAGGAGGGAATAGAGGGGGGGCAAGCATAAACAGTATATC
GACTACGGGAGCAGCAGAAGCCGCTCTGGCTGCCTTGGAGTCCCTCCAAT
CCCAAGCCATCCCCCCCCTGGAAATCTACAACGACGTGTTCGCTTGTTGT
GTGGTAGCCTCGGACTGGGCCCGTGCCCTCACCGTTCTCTCCCACATCGT
CTCTTTCGCAGGTCTCACCCCCACTTTAGACACATACAAAGCCGCCCTCG
ACGCTACCCATCAAATCAAGGACGAGGGAGGGAGGGAGAGAGGGCAGGGA
GGAAAATGGGAGAAAGCGTTGCGGCTCTATGAGGCGATGCTTGCGGCAGG
TGTGCAGCCAGATGGACGGATTATTGAAGGGGTACTGTTGGAGCTGGCCC
AGGTGGGGATGCTGAAGAAAGGGCTAGAGGTGATCGAGGAGGGGAAAGGA
CTGGGGGTGAGAAGTACCAAGTGGATGTACCGATTGTTGCTTGGGGTGCT
GTTTCGTGCGCCCTCGCCCGCAGTGGCAGCAGGAGCAGTAGCCACAGAAT
TTGAAAGAGGAACTGCTGCTCCTGCGGGTGCTTCACATCAGCAGCAACGG
GGTAAGAAACGAAAGCAAGCGCAGCCGCCTGTCGCCCCCCTGCCTCCCTC
CCTTTCTCCTCCCCTTGCCGCGGACTACTACGCATCGGCATTGGATGCTT
TGTACGGAATCGATCCTATGACGGGGTCACCCAGGCACAGGGTTGATGAT
GCGGCATGTATCTTCTTGGTGGAGGAAGTGTTTCGACGGAGGGGCGGGAA
GTTGACGTGGAAAGGGATAAGGCCCATCGTGAACTTGTTCTTGAGGGATG
TGACTGCTCATGGCGAGGTCGGCGCTGCTGCTGCTGCTACTACTTCTATC
GATGGCGCTACGGCGGCGGAAGTTGATGAAGGGGAAAGGAAAGAGTCGGC
CAATTCCTCCACGTCCACTTCCGCGTTCTCCGAGTCAGCCTTCCTCCTCC
TTCTCTCCCTCTGTAAGGCCGCCCAAGACGGAGAGCCCGGCCGGGAACCT
GCAGGAGGTGCGCTTGATGGTGCCCTGCTCATCCTCTCCTCCATGGTGGA
GCAAGGGAAGGGAAACACCCTCGCCTTCAACATGGTCCTTAAAATGTGCG
AACGTCGTCGTGACGCCCGCCGGGCCCTTCTCCTTCTTTCCCAGATGGAG
TCCCTGCCCTCCCTCCCTCCAGACCTCGTGTCCTACAACACCGTTATTTC
GGCATGTGCCCGAGGAAACCGGCCCCAAGACGCCCAGAGACTGGTCAAGG
CAATGGAGCAGAGGGCTAGTAGGAGTAGTAATAGTAGCAGCACTAGAGGA
GCGGAGGGAGGAAGGGTTGTCCCCTCCCTTGTGACTTACAACTCCCTCTT
GGCGGCCCTTGCCCAGGGGGGTCAGTGGAAGGAGGCCATGGCGGTATTGC
AGACGCTGAGGAGGAAGGGGCTGAAGGCTGACGTGATTACCTACACGAGC
TTGATCCAGGCTTGCTCTAAAGCGAAACCCTATCCTCAGGTGAAAAAGGC
GTTGTTTTTCCTGGATGAGATGCGTGGGGGGGGAATGGAGAAAGGGGAAG
AGGGTAGAAGAGGTGGTAGGTTTGCTTACAGTGACAAAGGCAGGGAGGCA
GGAGGGATTGGGGTGAGACCGGATGCGGTTGCTTATGCAGCGGCAATCGA
GGCATGTGCGAGGGGAGGGGT

Coding sequence (CDS) from alignment at scaffold_22:317633..320053+

>mRNA_7979 ID=mRNA_7979|Name=jgi.p|Nanoce1779_2|600758|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_22:317633..320053+ (Nannochloropsis oceanica)
ATGGCGAGGTCGGCGCTGCTGCTGCTGCTACTACTTCTATCGATGGCGCT
ACGGCGGCGGAAGTTGATGAAGGGGAAAGGAAAGAGTCGGCCAATTCCTC
CACGTCCACTTCCGCGTTCTCCGAGTCAGCCTTCCTCCTCCTTCTCTCCC
TCTGTAAGGCCGCCCAAGACGGAGAGCCCGGCCGGGAACCTGCAGGAGGT
GCGCTTGATGGTGCCCTGCTCATCCTCTCCTCCATGGTGGAGCAAGGGAA
GGGAAACACCCTCGCCTTCAACATGGTCCTTAAAATGTGCGAACGTCGTC
GTGACGCCCGCCGGGCCCTTCTCCTTCTTTCCCAGATGGAGTCCCTGCCC
TCCCTCCCTCCAGACCTCGTGTCCTACAACACCGTTATTTCGGCATGTGC
CCGAGGAAACCGGCCCCAAGACGCCCAGAGACTGGTCAAGGCAATGGAGC
AGAGGGCTAGTAGGAGTAGTAATAGTAGCAGCACTAGAGGAGCGGAGGGA
GGAAGGGTTGTCCCCTCCCTTGTGA

Synonyms

Publications