jgi.p|Nanoce1779_2|179719, mRNA_7977 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|179719
Unique NamemRNA_7977
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1505
Alignment locationscaffold_22:304491..305995 +

Link to JBrowse

Properties
Property NameValue
TranscriptId179805
TrackFilteredModels2
ProteinId179719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:304491..305995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179719gene_7977Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179719mRNA_7977-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7977CDS_7977Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7977 ID=mRNA_7977|Name=jgi.p|Nanoce1779_2|179719|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
AGTAACACAGACGACTAAGCTCACTTTCGCCTCCCATATCCTTATTTCCC
TCCCTCCCATTCTCCCCAGGTCAATATCTGGCAGCACCGTTCTCCTAGCA
TGCATATTGATATTCAGCATGTTACCCGTCCGCTCCTCCCTCCCTGCTGC
TTCGCTCGAGAACTGTCTAATCCTCCTCCTCTCCCTGTTGCTGAGCCTCT
TCATCCTCCCCTGCAGCTGGAGCATCAGCAGCAAGAACAAAATAAGAGGA
AGAGGGCAGTGGTGGATGGACAAGGAGAGAGTAGTCAAAGAGGGTTGGAA
AGTGAAGGATGTATAAATGGCCAAGCTAGCACATACAGCAGCAGCAGCAG
CAGCAGCAGCAGGAGGGGGAGGAACGGCAGCGACAGCAGCAGCGGTACGG
ATGGCGATGCTCCGTATACAAGAGGAAGAATGGGAGAGGGAGGAGAAGGA
GAAAAAGGAAGAGGGGGAGGAAAGCATTCTCAACCGACGTCAGCCGTGCC
CTTTGCAAGGATATCGGAATGGGGAGGGCCAGGAGGAATGGAAAGAGTAG
GAGAAGCAGAAGGAAAAGGAGAAAAGGGGGGAGGAGGAATGAACAACACC
TGGACACGACCTGCTCACTGGCCAGTCATGAAGCTCGGAGGGCGGGGCCC
AAAAGGAGGAGGAACGGGAGGAGGAGATGGATTAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAGGAGGAGGAAGAGGA
GCAAGAGAAGCGGATGGAAGAGCGGGAGGGAGAAAAGGGGGGGGGCAGGG
GATAGCAGTGTGGTATGAACTGGAGCAGCAACAGCACCAGCAGCAGCTTC
AGCAGCATTTCTTACAGCAGCTGCCGCCCTACCAGCAGTACCAACATCAA
CAACTCTACCAACGCTACCAGCACCACCATCACCAATACCACAAGCAGTG
GCTACAACTACCACCACCGAAAGTCCAGCCTTCAAAACCCAAGAGACGAC
ATAAGAAGAAGGGGAACATCCAAAATGCGGAACTTGCACAAGCAGTAGCA
CCACCACCAGCAGTAGCCCCAGCAGCGGAAGCAGTGGCGCAAGGAGCACC
AGCTGGTGCAACTGTAATAAGATGTTCTTCCTCCCGAGGAGGAGGAACAG
GAAAAGGAGGGAGAAGAGAGGAGGGAAGCAGGGGTGAAAGAGGGAGAGGA
ACAAGGTGTAAAGACGGAACACGAGGGCAGGCAGGAGAAGGAGGAATAGG
TCAAGGGGGGGAAAGAAAGGTCCTCATTATTCCAATAAGCCCAACAGATG
AGAGCAGTAGAAGCATCAGCAGCAAAAGCAGCAACAGCAGCACGCTTCCA
CTTGATAGTCGTGTGGTGTACTCTTGCGCTGGTGCTCCTCCTTTGGGTGC
TCATGCTGCGGCGACGGTGAAGCGCCGACGCTTTCCGTAACCCAGTTGAA
CGTCTATCGTTGCCGAGTGAGGGGAGAGGAGGAAAAGGAGTGGAGAGGAG
GAAGA
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protein sequence of jgi.p|Nanoce1779_2|179719

>mRNA_7977-protein ID=mRNA_7977-protein|Name=jgi.p|Nanoce1779_2|179719|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MHIDIQHVTRPLLPPCCFARELSNPPPLPVAEPLHPPLQLEHQQQEQNKR
KRAVVDGQGESSQRGLESEGCINGQASTYSSSSSSSSRRGRNGSDSSSGT
DGDAPYTRGRMGEGGEGEKGRGGGKHSQPTSAVPFARISEWGGPGGMERV
GEAEGKGEKGGGGMNNTWTRPAHWPVMKLGGRGPKGGGTGGGDGLGGRGG
GGGGGGGGREGGGGGRGAREADGRAGGRKGGGQGIAVWYELEQQQHQQQL
QQHFLQQLPPYQQYQHQQLYQRYQHHHHQYHKQWLQLPPPKVQPSKPKRR
HKKKGNIQNAELAQAVAPPPAVAPAAEAVAQGAPAGATVIRCSSSRGGGT
GKGGRREEGSRGERGRGTRCKDGTRGQAGEGGIGQGGERKVLIIPISPTD
ESSRSISSKSSNSSTLPLDSRVVYSCAGAPPLGAHAAATVKRRRFP*
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mRNA from alignment at scaffold_22:304491..305995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7977 ID=mRNA_7977|Name=jgi.p|Nanoce1779_2|179719|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp|location=Sequence derived from alignment at scaffold_22:304491..305995+ (Nannochloropsis oceanica)
AGTAACACAGACGACTAAGCTCACTTTCGCCTCCCATATCCTTATTTCCC
TCCCTCCCATTCTCCCCAGGTCAATATCTGGCAGCACCGTTCTCCTAGCA
TGCATATTGATATTCAGCATGTTACCCGTCCGCTCCTCCCTCCCTGCTGC
TTCGCTCGAGAACTGTCTAATCCTCCTCCTCTCCCTGTTGCTGAGCCTCT
TCATCCTCCCCTGCAGCTGGAGCATCAGCAGCAAGAACAAAATAAGAGGA
AGAGGGCAGTGGTGGATGGACAAGGAGAGAGTAGTCAAAGAGGGTTGGAA
AGTGAAGGATGTATAAATGGCCAAGCTAGCACATACAGCAGCAGCAGCAG
CAGCAGCAGCAGGAGGGGGAGGAACGGCAGCGACAGCAGCAGCGGTACGG
ATGGCGATGCTCCGTATACAAGAGGAAGAATGGGAGAGGGAGGAGAAGGA
GAAAAAGGAAGAGGGGGAGGAAAGCATTCTCAACCGACGTCAGCCGTGCC
CTTTGCAAGGATATCGGAATGGGGAGGGCCAGGAGGAATGGAAAGAGTAG
GAGAAGCAGAAGGAAAAGGAGAAAAGGGGGGAGGAGGAATGAACAACACC
TGGACACGACCTGCTCACTGGCCAGTCATGAAGCTCGGAGGGCGGGGCCC
AAAAGGAGGAGGAACGGGAGGAGGAGATGGATTAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAGGAGGAGGAAGAGGA
GCAAGAGAAGCGGATGGAAGAGCGGGAGGGAGAAAAGGGGGGGGGCAGGG
GATAGCAGTGTGGTATGAACTGGAGCAGCAACAGCACCAGCAGCAGCTTC
AGCAGCATTTCTTACAGCAGCTGCCGCCCTACCAGCAGTACCAACATCAA
CAACTCTACCAACGCTACCAGCACCACCATCACCAATACCACAAGCAGTG
GCTACAACTACCACCACCGAAAGTCCAGCCTTCAAAACCCAAGAGACGAC
ATAAGAAGAAGGGGAACATCCAAAATGCGGAACTTGCACAAGCAGTAGCA
CCACCACCAGCAGTAGCCCCAGCAGCGGAAGCAGTGGCGCAAGGAGCACC
AGCTGGTGCAACTGTAATAAGATGTTCTTCCTCCCGAGGAGGAGGAACAG
GAAAAGGAGGGAGAAGAGAGGAGGGAAGCAGGGGTGAAAGAGGGAGAGGA
ACAAGGTGTAAAGACGGAACACGAGGGCAGGCAGGAGAAGGAGGAATAGG
TCAAGGGGGGGAAAGAAAGGTCCTCATTATTCCAATAAGCCCAACAGATG
AGAGCAGTAGAAGCATCAGCAGCAAAAGCAGCAACAGCAGCACGCTTCCA
CTTGATAGTCGTGTGGTGTACTCTTGCGCTGGTGCTCCTCCTTTGGGTGC
TCATGCTGCGGCGACGGTGAAGCGCCGACGCTTTCCGTAACCCAGTTGAA
CGTCTATCGTTGCCGAGTGAGGGGAGAGGAGGAAAAGGAGTGGAGAGGAG
GAAGA
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Coding sequence (CDS) from alignment at scaffold_22:304491..305995+

>mRNA_7977 ID=mRNA_7977|Name=jgi.p|Nanoce1779_2|179719|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_22:304491..305995+ (Nannochloropsis oceanica)
ATGCATATTGATATTCAGCATGTTACCCGTCCGCTCCTCCCTCCCTGCTG
CTTCGCTCGAGAACTGTCTAATCCTCCTCCTCTCCCTGTTGCTGAGCCTC
TTCATCCTCCCCTGCAGCTGGAGCATCAGCAGCAAGAACAAAATAAGAGG
AAGAGGGCAGTGGTGGATGGACAAGGAGAGAGTAGTCAAAGAGGGTTGGA
AAGTGAAGGATGTATAAATGGCCAAGCTAGCACATACAGCAGCAGCAGCA
GCAGCAGCAGCAGGAGGGGGAGGAACGGCAGCGACAGCAGCAGCGGTACG
GATGGCGATGCTCCGTATACAAGAGGAAGAATGGGAGAGGGAGGAGAAGG
AGAAAAAGGAAGAGGGGGAGGAAAGCATTCTCAACCGACGTCAGCCGTGC
CCTTTGCAAGGATATCGGAATGGGGAGGGCCAGGAGGAATGGAAAGAGTA
GGAGAAGCAGAAGGAAAAGGAGAAAAGGGGGGAGGAGGAATGAACAACAC
CTGGACACGACCTGCTCACTGGCCAGTCATGAAGCTCGGAGGGCGGGGCC
CAAAAGGAGGAGGAACGGGAGGAGGAGATGGATTAGGAGGAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAGGAGGAGGAAGAGG
AGCAAGAGAAGCGGATGGAAGAGCGGGAGGGAGAAAAGGGGGGGGGCAGG
GGATAGCAGTGTGGTATGAACTGGAGCAGCAACAGCACCAGCAGCAGCTT
CAGCAGCATTTCTTACAGCAGCTGCCGCCCTACCAGCAGTACCAACATCA
ACAACTCTACCAACGCTACCAGCACCACCATCACCAATACCACAAGCAGT
GGCTACAACTACCACCACCGAAAGTCCAGCCTTCAAAACCCAAGAGACGA
CATAAGAAGAAGGGGAACATCCAAAATGCGGAACTTGCACAAGCAGTAGC
ACCACCACCAGCAGTAGCCCCAGCAGCGGAAGCAGTGGCGCAAGGAGCAC
CAGCTGGTGCAACTGTAATAAGATGTTCTTCCTCCCGAGGAGGAGGAACA
GGAAAAGGAGGGAGAAGAGAGGAGGGAAGCAGGGGTGAAAGAGGGAGAGG
AACAAGGTGTAAAGACGGAACACGAGGGCAGGCAGGAGAAGGAGGAATAG
GTCAAGGGGGGGAAAGAAAGGTCCTCATTATTCCAATAAGCCCAACAGAT
GAGAGCAGTAGAAGCATCAGCAGCAAAAGCAGCAACAGCAGCACGCTTCC
ACTTGATAGTCGTGTGGTGTACTCTTGCGCTGGTGCTCCTCCTTTGGGTG
CTCATGCTGCGGCGACGGTGAAGCGCCGACGCTTTCCGTAA
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Synonyms
Publications