jgi.p|Nanoce1779_2|559214, mRNA_7974 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559214
Unique NamemRNA_7974
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1196
Alignment locationscaffold_22:300629..302250 -

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Properties
Property NameValue
TranscriptId559300
TrackFilteredModels2
ProteinId559214
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:300629..302250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559214gene_7974Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559214mRNA_7974-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7974CDS_7974Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7974 ID=mRNA_7974|Name=jgi.p|Nanoce1779_2|559214|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
ACAGGCACCTGCACGAAGAGCGCGACAGTCAAATCGGCGGGGTTGTGTGG
GTCATTGGGTTTCTTTTGAGCCGTGATTGAGACAAGCGGGCTGCTAGTGC
GAGTCTCTGGAAGGCAACGCACATTCATTCTTCTTCTTGGAGCAACACGG
GCGATACCAGGGGCAAGTCAACAGACGGGAGAAACATAACTTCCAGCCGC
CCATCTAAATTGCACGGTAATGAAGTCAACAAGAAAATTCAGGGTAGTGG
GTTTGGCATGTGGCTCGGAAAAAATGTCTCCGAGCGCTCCTGCTTCTCTG
TTTTCCGCATCAAGCCTTTGTTCCCCTGTACCGCCCCTTGCTCCCCTACG
AACACATCTATCCATGCCTAGCGTACTTCATGCTGCTTCTCGCGGTCAGT
ATAAATCTCCGCAAATTCCATGTTCTTTTTCCGTTTCCTCCTTCTCCATC
CTTTTCAGCCTAGATAAGAAAAATGGCGGAATTCGGTGAGTTGGTGCTAG
TCCTGGGTGACATGCACATCCCTCATCGCGCGGCAGCTATTCCAGAAAAG
TTTAAACGAATGCTCGTGCCTAACAAGATGCAGCATGTCTTGTGCACTGG
CAACCTCATCTCGCGCGAGCAACTTGATGAGCTCAAGTCCTTGGCCCCCA
ACGTGCACGTTGTCCGGGGCGACATGGACGACCCGTTCTGCTCCTCTTCC
TCCTCCTTTCTCCCTTCCACCTCCTCCACCTTCCCCGAAACCAAAGTTGT
CACGATAGGCGAGCTGCGCGTTGGTCTGTGTCACGGGCACCAGGTCTTGC
CTTGGGGCGATGAGGGGGCTTTGAGTATGCTAGCTCGAGAGCTAGACGTC
GATGTCCTCATCACAGGACACACGCACATACACCAAGTGAGCGAGCGGGG
AGGGAAGTGGTTCTTGAACCCGGGCAGCATCTCAGGGGCGTACTCCAGTT
TTGAAGGCGGGAATGAAGGGCGGGAGGTAATCCCGAGTTTTATCCTGCTG
GCAGTGCAGGGGAAGAAAGTCATGTGTTATGTCTATGAGGAGAAAGAGCC
AGGGGAGGTGGAGGTCAGCAAAGTGGAGTTTGTGAAGGGGCAGCCGGCAG
CTTCAGCTGATGCAGCAGCGGCAGCAGGGGCGGGGAGATGAAGAAAAAAG
GGTAAAGGGGAGAAGAGCGAGGGAGCGCCTTATCGACTATGGCCTT
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protein sequence of jgi.p|Nanoce1779_2|559214

>mRNA_7974-protein ID=mRNA_7974-protein|Name=jgi.p|Nanoce1779_2|559214|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MAEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQ
LDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRV
GLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNP
GSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSK
VEFVKGQPAASADAAAAAGAGR*
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mRNA from alignment at scaffold_22:300629..302250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7974 ID=mRNA_7974|Name=jgi.p|Nanoce1779_2|559214|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at scaffold_22:300629..302250- (Nannochloropsis oceanica)
ACAGGCACCTGCACGAAGAGCGCGACAGTCAAATCGGCGGGGTTGTGTGG
GTCATTGGGTTTCTTTTGAGCCGTGATTGAGACAAGCGGGCTGCTAGTGC
GAGTCTCTGGAAGGCAACGCACATTCATTCTTCTTCTTGGAGCAACACGG
GCGATACCAGGGGCAAGTCAACAGACGGGAGAAACATAACTTCCAGCCGC
CCATCTAAATTGCACGGTAATGAAGTCAACAAGAAAATTCAGGGTAGTGG
GTTTGGCATGTGGCTCGGAAAAAATGTCTCCGAGCGCTCCTGCTTCTCTG
TTTTCCGCATCAAGCCTTTGTTCCCCTGTACCGCCCCTTGCTCCCCTACG
AACACATCTATCCATGCCTAGCGTACTTCATGCTGCTTCTCGCGGTCAGT
ATAAATCTCCGCAAATTCCATGTTCTTTTTCCGTTTCCTCCTTCTCCATC
CTTTTCAGCCTAGATAAGAAAAATGGCGGAATTCGGTGAGTTGGTGCTAG
TCCTGGGTGACATGCACATCCCTCATCGCGCGGCAGCTATTCCAGAAAAG
TTTAAACGAATGCTCGTGCCTAACAAGATGCAGCATGTCTTGTGCACTGG
TACGTGCAAGAGGAGGGTAGGGATAGGTGGTAGGCAAAGTAAACGGGTGC
TTATTTTATTTTGTTCCCTTCACAATTAGGATGTTATACCCTATCGATGA
TTCTCTTCCCTTTAACCGCATTTCCCCCCTCTAGGCAACCTCATCTCGCG
CGAGCAACTTGATGAGCTCAAGTCCTTGGCCCCCAACGTGCACGTTGTCC
GGGGCGACATGGACGACCCGTTCTGCTCCTCTTCCTCCTCCTTTCTCCCT
TCCACCTCCTCCACCTTCCCCGAAACCAAAGTTGTCACGATAGGCGAGCT
GCGCGTTGGTCTGTGTCACGGGCACCAGGTCTTGCCTTGGGGCGATGAGG
GGGCTTTGAGTATGCTAGCTCGAGAGCTAGACGTCGATGTCCTCATCACA
GGACACACGCACATACACCAAGTGAGCGAGCGGGGAGGGAAGTGGTTCTT
GAACCCGGGCAGCATCTCAGGGGCGTACTCCAGTTTTGAAGGCGGGAATG
AAGGGCGGGAGGTAATCCCGAGTTTTATCCTGCTGGCAGTGCAGGGGAAG
AAAGTCATGTGTTATGTCTATGAGGAGAAAGAGCCAGGGGAGGTGGAGGT
CAGCAAAGTGGAGTTTGTGAAGGGGCAGCCGGCAGCTTCAGCTGATGCAG
CAGCGGCAGCAGGGGCGGGGAGATGAAGAAAAAAGGGTAAAGGGGAGAAG
AGCGAGGGAGGTAAGGAGGGGATATGTAAAGAAAGTAAGAGAGGACTTTG
TCTGGTCTATCCTCCCTTCCGCTGCACGCCCAAGTTTTTCGTGTTTTTCC
CTTTCTATTAATCCTGTGTAAGTTTCTAGTTCTTCGTCGTCGTCTCGACT
CTTCTCTTTTCCCTCCGTTTTCTCGCCTTCTTACTTCCCCTACTCGTCAA
CTACCGAACCCCCTTCAAACCTCCTACCTCTTACACCAAAGTAACGTACC
CTCTCCCTATCTCCCCTTCCCCATCTAATGCCCATTACTGTGCTCTGCCA
GCGCCTTATCGACTATGGCCTT
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Coding sequence (CDS) from alignment at scaffold_22:300629..302250-

>mRNA_7974 ID=mRNA_7974|Name=jgi.p|Nanoce1779_2|559214|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_22:300629..302250- (Nannochloropsis oceanica)
GCAACCTCATCTCGCGCGAGCAACTTGATGAGCTCAAGTCCTTGGCCCCC
AACGTGCACGTTGTCCGGGGCGACATGGACGACCCGTTCTGCTCCTCTTC
CTCCTCCTTTCTCCCTTCCACCTCCTCCACCTTCCCCGAAACCAAAGTTG
TCACGATAGGCGAGCTGCGCGTTGGTCTGTGTCACGGGCACCAGGTCTTG
CCTTGGGGCGATGAGGGGGCTTTGAGTATGCTAGCTCGAGAGCTAGACGT
CGATGTCCTCATCACAGGACACACGCACATACACCAAGTGAGCGAGCGGG
GAGGGAAGTGGTTCTTGAACCCGGGCAGCATCTCAGGGGCGTACTCCAGT
TTTGAAGGCGGGAATGAAGGGCGGGAGGTAATCCCGAGTTTTATCCTGCT
GGCAGTGCAGGGGAAGAAAGTCATGTGTTATGTCTATGAGGAGAAAGAGC
CAGGGGAGGTGGAGGTCAGCAAAGTGGAGTTTGTGAAGGGGCAGCCGGCA
GCTTCAGCTGATGCAGCAGCGGCAGCAGGGGCGGGGAGATGAATGGCGGA
ATTCGGTGAGTTGGTGCTAGTCCTGGGTGACATGCACATCCCTCATCGCG
CGGCAGCTATTCCAGAAAAGTTTAAACGAATGCTCGTGCCTAACAAGATG
CAGCATGTCTTGTGCACTGGCAACCTCATCTCGCGCGAGCAACTTGATGA
GCTCAAGTCCTTGGCCCCCAACGTGCACGTTGTCCGGGGCGACATGGACG
ACCCGTTCTGCTCCTCTTCCTCCTCCTTTCTCCCTTCCACCTCCTCCACC
TTCCCCGAAACCAAAGTTGTCACGATAGGCGAGCTGCGCGTTGGTCTGTG
TCACGGGCACCAGGTCTTGCCTTGGGGCGATGAGGGGGCTTTGAGTATGC
TAGCTCGAGAGCTAGACGTCGATGTCCTCATCACAGGACACACGCACATA
CACCAAGTGAGCGAGCGGGGAGGGAAGTGGTTCTTGAACCCGGGCAGCAT
CTCAGGGGCGTACTCCAGTTTTGAAGGCGGGAATGAAGGGCGGGAGGTAA
TCCCGAGTTTTATCCTGCTGGCAGTGCAGGGGAAGAAAGTCATGTGTTAT
GTCTATGAGGAGAAAGAGCCAGGGGAGGTGGAGGTCAGCAAAGTGGAGTT
TGTGAAGGGGCAGCCGGCAGCTTCAGCTGATGCAGCAGCGGCAGCAGGGG
CGGGGAGATGAATGGCGGAATTCGGTGAGTTGGTGCTAGTCCTGGGTGAC
ATGCACATCCCTCATCGCGCGGCAGCTATTCCAGAAAAGTTTAAACGAAT
GCTCGTGCCTAACAAGATGCAGCATGTCTTGTGCACTG
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Synonyms
Publications