jgi.p|Nanoce1779_2|179820, mRNA_7973 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|179820
Unique NamemRNA_7973
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length742
Alignment locationscaffold_22:299691..300825 +

Link to JBrowse

Properties
Property NameValue
TranscriptId179906
TrackFilteredModels2
ProteinId179820
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:299691..300825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179820gene_7973Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179820mRNA_7973-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7973CDS_7973Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7973 ID=mRNA_7973|Name=jgi.p|Nanoce1779_2|179820|organism=Nannochloropsis oceanica|type=mRNA|length=742bp
GCGAAGGGCGGAGAAGCAGCAGTCACACACTCATGTGAGCCAACAAGATG
AGCCCACGCTCACGGCACTCAAACCGTCTTGCTTCCAAACCACACACTTC
TGGCCCCGCTGTCCCATGTCGACCATACCCACATCCTCCTAGCGCTGGGC
ACGTTGATTGGGGATTGTTGGAAGGGGTGGAGGGTAAGAGGCAAGGATTT
AACTGGCTCCAGTCGCAATCGCACCAACAACTTCAGTTCGTTCTTTCATG
CACTTCCTCCCATCCTCTCCTCAAAGCCGCTGTGCCTAAAGACCATCCTT
TCCACACTCACGCATATCAACACAGCATCATGGAGTCTGTCAAGGCAGCG
GCCACCTTCGCGACCTCGCACTTGATCAGGCCGGCGTACTATAAGGAGCA
ATTCGCGGGTTTCTCTAAGTACTACTACTGGAAGTACATTCGTCCCGGCT
CCATGAAGCCCTTGGCGCACCTTATGGTGCTGACAGGGGTGCTCGGGTAC
ACTGTGGAATGGTTTGCGTTGGGCCAGCACCACGTTGCCCACAAGAAGGC
CATAGTCGATAAGGCGCTGGCAGAGCACAGTAATGGGCATTAGATGGGGA
AGGGGAGATAGGGAGAGGGTACGTTACTTTGGTGTAAGAGGTAGGAGGTT
TGAAGGGGGTTCGGTAGTTGACGAGTAGGGGAAGTAAGAAGGCGAGAAAA
CGGAGGGAAAAGAGAAGAGTCGAGACGACGACGAAGAACTAG
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protein sequence of jgi.p|Nanoce1779_2|179820

>mRNA_7973-protein ID=mRNA_7973-protein|Name=jgi.p|Nanoce1779_2|179820|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MSPRSRHSNRLASKPHTSGPAVPCRPYPHPPSAGHVDWGLLEGVEGKRQG
FNWLQSQSHQQLQFVLSCTSSHPLLKAAVPKDHPFHTHAYQHSIMESVKA
AATFATSHLIRPAYYKEQFAGFSKYYYWKYIRPGSMKPLAHLMVLTGVLG
YTVEWFALGQHHVAHKKAIVDKALAEHSNGH*
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mRNA from alignment at scaffold_22:299691..300825+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7973 ID=mRNA_7973|Name=jgi.p|Nanoce1779_2|179820|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp|location=Sequence derived from alignment at scaffold_22:299691..300825+ (Nannochloropsis oceanica)
GCGAAGGGCGGAGAAGCAGCAGTCACACACTCATGTGAGCCAACAAGATG
AGCCCACGCTCACGGCACTCAAACCGTCTTGCTTCCAAACCACACACTTC
TGGCCCCGCTGTCCCATGTCGACCATACCCACATCCTCCTAGCGCTGGGC
ACGTTGATTGGGGATTGTTGGAAGGGGTGGAGGGTAAGAGGCAAGGATTT
AACTGGCTCCAGTCGCAATCGCACCAACAACTTCAGTTCGTTCTTTCATG
CACTTCCTCCCATCCTCTCCTCAAAGCCGCTGTGCCTAAAGACCATCCTT
TCCACACTCACGCATATCAACACAGCATCATGGAGTCTGTCAAGGCAGCG
GCCACCTTCGCGACCTCGCACTTGATCAGGCCGGTACGTCTGGGTATCGG
GTGAGCAAGAAGGAAGACAGTGATACCGGAGGGAAGACATATGGAGTGGT
CGGCGTCTGAATGCTGTCAGCCTGGCAATGAGCGCTTAAGATTGCGGTGC
AATTATCGCAATGGTATCTGCGGAGCTGGCTGCCAGTGCAGTTTTGTCGT
GGGCCTTTCCTTTTGTGTCCCAGGTCGTCGTCGTCATGAGTAGGGCCCCG
CTTGTCTGCCGGCCTGACCTTCACCTACTTCCCTTCCTCCCTCCTATCGC
ATTGTATATGTTTAATATTCTATTCAAGCCCAAATCCTGTGTGTCTATCG
CCGTTTTGCGCCTAGCCTTAATAATTTTATCCTCCCTCACCCTCCCTCCC
TTCTACCCTCCTTCCAATCCAACCAGGCGTACTATAAGGAGCAATTCGCG
GGTTTCTCTAAGTACTACTACTGGAAGTACATTCGTCCCGGCTCCATGAA
GCCCTTGGCGCACCTTATGGTGCTGACAGGGGTGCTCGGGTACACTGTGG
AATGGTTTGCGTTGGGCCAGCACCACGTTGCCCACAAGAAGGCCATAGTC
GATAAGGCGCTGGCAGAGCACAGTAATGGGCATTAGATGGGGAAGGGGAG
ATAGGGAGAGGGTACGTTACTTTGGTGTAAGAGGTAGGAGGTTTGAAGGG
GGTTCGGTAGTTGACGAGTAGGGGAAGTAAGAAGGCGAGAAAACGGAGGG
AAAAGAGAAGAGTCGAGACGACGACGAAGAACTAG
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Coding sequence (CDS) from alignment at scaffold_22:299691..300825+

>mRNA_7973 ID=mRNA_7973|Name=jgi.p|Nanoce1779_2|179820|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_22:299691..300825+ (Nannochloropsis oceanica)
ATGAGCCCACGCTCACGGCACTCAAACCGTCTTGCTTCCAAACCACACAC
TTCTGGCCCCGCTGTCCCATGTCGACCATACCCACATCCTCCTAGCGCTG
GGCACGTTGATTGGGGATTGTTGGAAGGGGTGGAGGGTAAGAGGCAAGGA
TTTAACTGGCTCCAGTCGCAATCGCACCAACAACTTCAGTTCGTTCTTTC
ATGCACTTCCTCCCATCCTCTCCTCAAAGCCGCTGTGCCTAAAGACCATC
CTTTCCACACTCACGCATATCAACACAGCATCATGGAGTCTGTCAAGGCA
GCGGCCACCTTCGCGACCTCGCACTTGATCAGGCCGGCGTACTATAAGGA
GCAATTCGCGGGTTTCTCTAAGTACTACTACTGGAAGTACATTCGTCCCG
GCTCCATGAAGCCCTTGGCGCACCTTATGGTGCTGACAGGGGTGCTCGGG
TACACTGTGGAATGGTTTGCGTTGGGCCAGCACCACGTTGCCCACAAGAA
GGCCATAGTCGATAAGGCGCTGGCAGAGCACAGTAATGGGCATTAGATGA
GCCCACGCTCACGGCACTCAAACCGTCTTGCTTCCAAACCACACACTTCT
GGCCCCGCTGTCCCATGTCGACCATACCCACATCCTCCTAGCGCTGGGCA
CGTTGATTGGGGATTGTTGGAAGGGGTGGAGGGTAAGAGGCAAGGATTTA
ACTGGCTCCAGTCGCAATCGCACCAACAACTTCAGTTCGTTCTTTCATGC
ACTTCCTCCCATCCTCTCCTCAAAGCCGCTGTGCCTAAAGACCATCCTTT
CCACACTCACGCATATCAACACAGCATCATGGAGTCTGTCAAGGCAGCGG
CCACCTTCGCGACCTCGCACTTGATCAGGCCGGCGTACTATAAGGAGCAA
TTCGCGGGTTTCTCTAAGTACTACTACTGGAAGTACATTCGTCCCGGCTC
CATGAAGCCCTTGGCGCACCTTATGGTGCTGACAGGGGTGCTCGGGTACA
CTGTGGAATGGTTTGCGTTGGGCCAGCACCACGTTGCCCACAAGAAGGCC
ATAGTCGATAAGGCGCTGGCAGAGCACAGTAATGGGCATTAG
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Synonyms
Publications