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Properties
| Property Name | Value |
|---|
| TranscriptId | 559294 |
| Track | FilteredModels2 |
| ProteinId | 559208 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:295406..299215 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7970 ID=mRNA_7970|Name=jgi.p|Nanoce1779_2|559208|organism=Nannochloropsis oceanica|type=mRNA|length=3647bp
CAGTAGAAGCAGGAGTATCAGAAGCAACGCTCAAAGCAATCGATCGATGT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCCCCCCCTACACCCCTCCTTCGAGGAGCCCCATCACAACCAC
CACCGGCAACAATGACACGGCCGGTCCCGCCCCCTCTTCCGACCCCACAA
GTAGGAAACGTGGGCGTCCCTCTAGTAAGGCAAAGGCTGCAGCTATAGCA
GTTGCCGCAGGAGCGGTTTCAACAACATCGGTCGAAGAAGAAAAGGGAAA
AGGAGAAGCACTACTATTACCTGTCCACGAGATGAAAGCGGCGACTATGA
AGACAAAGAAAGAAGAGGCGATTGTCGCCATCGCAACAGCGGCAAAGAAA
CGTAGGACGAAAACAGAAAAAGTTAATGCTGCTACTGCTGCTGCTGCTGC
TGCTGTTACAGAAAAATACACAGATCCTTCGTTCTCCTCTCTACCCGCCA
AACAAGGCCACAAGAAAACGGAACTCATCCGCGATCTTGCAGCACCAGCG
GCAACAGCAGCAGTAGCAACAACAGCAGCAGCACCAGCGATTGCAGCGGC
AGCAGTCCCTCTCAACAAAGTCATACGTACCCGTACCCCGCGTTCCACCA
TCCCCCGTGCACTCACGCCCCGGGTCGAAAACGGCTCGTCCTCTTCCTCC
CTTATTTCCTCCTCCTCATCCTCCTCCTCCTCCATATCACAACAAAAGAG
GCTCTTCCGTCTTCTCTCTTGGAATGTTGCAGGGCTACGAGGTCTTCTTA
AAAAAGGAGATGCCACCATTGACGCTTTCCGCTCCCTCCTTCTCCACGAA
AAACCTGATATTCTCTGCCTCCAGGAGACCAAACTGCAAGAGGGTAGGCG
CACTGCTTTCGTCCCATTCTGTCGTACTCTCTCTTGTTTTCTTCCTCCCT
CCCTCCCTCCCTCCCTACCTTTTTCTCCCCTCTGCGGACTACGTACGTCG
CTAAAGTGAGCGTTGCTATGCATGCGTTAAGTTTGCCTCGGTGTCAAATG
AACTGGCCATTGTGTACCTTCAACCCTACCTTCCTCCCCCTCTTCCTCCT
TCCCTTTACCAAATAGACCATGTGGCTGAAGTCAGCGCTGCCTTGCGTGC
TTTACATTTGCCTGGATTTCACGGCAACTGGCATTGCTCCACCGCCAAAA
AAGGCTATTCAGGCACCTCAATTTTAATAAGTGAACAAGCAGGGCTGAGT
CTAGGCCCTGGGCGGGTGAAGTGCGGGATGGAGGGGGAGGAGGACGGGGA
GGGGGAAGGAAGGGTCATAACGATTGATTTTGGTGCGTTTAGTTTGGTGA
ATGTCTACACGCCGAATAGTGGGGAGGGATTGAAGAGGTTGGAGTTTCGA
ACCAACAGTTGGGACAGAGCATTTGAACAGCATTTGTTGCGGTTGCAGAG
GGGAGGAGAAGGAGGAAGAGGAGGAGGCGGAATAGAGGGAGGGAGGGCGG
TGTTGTGTTGTGGAGATTTGAATGTAGCGTTTGAGGATGCTGATTTTTAC
AATCCAGGCGAGCCACGGATGGCTAAGGCTGCGGGGACAACACCGGAGGA
ACGAGCGTCGTTCGGGCGCTTGTTGGAGGGAGCGGGGATGGTGGACACGT
TCAGATTTTACCATCCGGAGGCGACGGGGTGTTATTCGTATTGGTCGATG
CGGGCAGGGAACCGGCCTTTCAATCGAGGGATGCGCCTGGATTATTTCTT
GGCAAGTCGGAATATGATGAGGGGTAAGGGGGAGGGGAAGAAGGGAGTGC
CAAGGGTGTTGGACTCGTTTATTTTGGACCAGGCGACGGTGGGGTTGAGC
GACCATGCACCGGTTGGTGTGTTATTAGAGGTAGAGGGAGTGGGTGGAGC
GCCAGACGGGAGGGGAAAATTGGGAGACTAAAAAAGATGCACGTCGTGTG
CTTGTGTATGCACTCTCTTGCTATTTGGCTCATGGATTTGGGTTTTGGTT
TGTTTCTTTGCCTACCGGTCTGCTGATATTGTGTTAGATGCGTATGTGCC
GGTCTCGCCCTTGGCGCTTGGGTAGCCTTAACCAGCGGGGTCAAATAGCC
AGCAGGCTGTCGGAAGGCATAACTCATTTTCGTCGCATGCACAAGAACCC
GCACACCTCCTCCCCCTTCCTCCTCTCCCCTCCTTATTCCCCACTACCTT
CTTTCTTTGCCTGTCTTCCCTCTCTCCGCCTGTCTTTTTCCCTCTTCTTC
ACATTTTCTTCCTCTCCCCCTTCCCCTCTCCTCTCCTCCTTTTGGCCGCT
CTTCCCACCTTCCCTCCTCTTCCTCTTCCCTCCTCCTGCTTTTATTTGAA
AGACGCGAGCTTTATTCGCGAAAGATTGCAGGCCCCTCCTTCCCCGCTTC
CACATCCCCCTCTATTCCTCCTTTCATATTTCTCTTCATTCCTCTTCTTT
CCACCACCTTCTTGTCATCCCCTTATTCCTTCCCGAGCGGGGTGGTCGTA
CTTCATCAATTCATGTTATGTGTTTGTGGGAGTCCGGAAATTTCGAGATT
AAACCTGTTGGAATGCGAAAATTCAACCCAGTTGTAACACTTATATGAAA
GCATGCACCTCGTCTCCTACGTGCCCGCTCCCCCCTTCCTCGTCAACCTT
ATCTGTTCATCCCTTCCATGCCGTTCATCAATGCATGCACTGCGCCTCCC
CATATCCAAACGTCTGCGGCGGTTTCGACGTGTCAATCAATCAGTCAGTC
ACTCGACGTGTCATCGTCTTGTCTTTGCGACAGCCGCAATCACCACCACT
TATTAAAAAAAAACCCAGAGCACCAGCATCGTCACTCTGCTCACGTCCTC
ATGCCAAATGTCCCCCCCCCCTCAACCTAGCATCCACAGGCCTTGCTTTA
ATCATGCTCAGCCCGCCAGCCTCCTCCCAGCTCCTCCTCCTTGCCTGTTG
CCTCGTCTCCTGCACCACAGCCTTCTTGAGGCCAGCGACCACCGCTCTCA
GTACGCGGCTGTTGCTGTTGCAAGGCCGCGGCAGTGGCAGCAAGGGTGTG
AGTGGCAGCGAAAGTAAAATGACGACGACGACCACTATTACAGCAGTGGG
GAGGTCAAAAGGGACGACGACGGCGCTTTCCTCCGCATACTCGGAACCCA
CCCCCCTGGCCAGTGACCCGCCCTTCCGCATAGGCCATGGATTCGACATC
CACAGACTCGAGCCTGGCCTACCTTTGGTGATTGGGGGCGTAAAGATCGA
CTTTGAAAAGGGGTCTGCTGCCCACTCCGACGGAGATGCTCTCTACCATT
CAGTGACAGACGCGATTCTCGGTGCGATAGGCATGCCCGACATCGGACAA
CTCTTCCCCGACAACGACCCCAAATGGAAGGGCGCAAATTCCTCGGCCTT
CCTGAAGGAAGCCCACAGGCTAATGACGCTTCGAGGGTACAAAATTGGGA
ATGTGGACGTGACGTTGATATTGCAAAAACCAAAGGTCATGGGGATTAAG
CCTCAAATGAAAGAGAATGTGGTAAGTCTGCTTCAAACAACCCCGGACCG
TGTGAATATTAAAGCGAGGACGCACGAAAATGTGGATAGTGTCGGGGAGA
GTAGGAGTTGGGTGGTGCATGTGGTGATATTGCTTGAAAAGGTTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|559208 >mRNA_7970-protein ID=mRNA_7970-protein|Name=jgi.p|Nanoce1779_2|559208|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MKACTSSPTCPLPPSSSTLSVHPFHAVHQCMHCASPYPNVCGGFDVSINQ
SVTRRVIVLSLRQPQSPPLIKKKPRAPASSLCSRPHAKCPPPLNLASTGL
ALIMLSPPASSQLLLLACCLVSCTTAFLRPATTALSTRLLLLQGRGSGSK
GVSGSESKMTTTTTITAVGRSKGTTTALSSAYSEPTPLASDPPFRIGHGF
DIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDI
GQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMG
IKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEKV
* back to topmRNA from alignment at scaffold_22:295406..299215- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7970 ID=mRNA_7970|Name=jgi.p|Nanoce1779_2|559208|organism=Nannochloropsis oceanica|type=mRNA|length=3810bp|location=Sequence derived from alignment at scaffold_22:295406..299215- (Nannochloropsis oceanica)
CAGTAGAAGCAGGAGTATCAGAAGCAACGCTCAAAGCAATCGATCGGTAA
GGCAAACGCAGCGGCGGAAGTGAAGAAGAGTGATAGAGTTTCAGGTACAG
CAGACATTCAATTCATCAATGCTTCTCTCTGAGCAGATAAAAAGCAAAGC
AGGTCATTTTTTTTCGACGTTTAAGAATTTACCTATGCATACCATTCCCA
AACCACTAGATGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCCCCCCCTACACCCCTCCTTCGAGGAGCC
CCATCACAACCACCACCGGCAACAATGACACGGCCGGTCCCGCCCCCTCT
TCCGACCCCACAAGTAGGAAACGTGGGCGTCCCTCTAGTAAGGCAAAGGC
TGCAGCTATAGCAGTTGCCGCAGGAGCGGTTTCAACAACATCGGTCGAAG
AAGAAAAGGGAAAAGGAGAAGCACTACTATTACCTGTCCACGAGATGAAA
GCGGCGACTATGAAGACAAAGAAAGAAGAGGCGATTGTCGCCATCGCAAC
AGCGGCAAAGAAACGTAGGACGAAAACAGAAAAAGTTAATGCTGCTACTG
CTGCTGCTGCTGCTGCTGTTACAGAAAAATACACAGATCCTTCGTTCTCC
TCTCTACCCGCCAAACAAGGCCACAAGAAAACGGAACTCATCCGCGATCT
TGCAGCACCAGCGGCAACAGCAGCAGTAGCAACAACAGCAGCAGCACCAG
CGATTGCAGCGGCAGCAGTCCCTCTCAACAAAGTCATACGTACCCGTACC
CCGCGTTCCACCATCCCCCGTGCACTCACGCCCCGGGTCGAAAACGGCTC
GTCCTCTTCCTCCCTTATTTCCTCCTCCTCATCCTCCTCCTCCTCCATAT
CACAACAAAAGAGGCTCTTCCGTCTTCTCTCTTGGAATGTTGCAGGGCTA
CGAGGTCTTCTTAAAAAAGGAGATGCCACCATTGACGCTTTCCGCTCCCT
CCTTCTCCACGAAAAACCTGATATTCTCTGCCTCCAGGAGACCAAACTGC
AAGAGGGTAGGCGCACTGCTTTCGTCCCATTCTGTCGTACTCTCTCTTGT
TTTCTTCCTCCCTCCCTCCCTCCCTCCCTACCTTTTTCTCCCCTCTGCGG
ACTACGTACGTCGCTAAAGTGAGCGTTGCTATGCATGCGTTAAGTTTGCC
TCGGTGTCAAATGAACTGGCCATTGTGTACCTTCAACCCTACCTTCCTCC
CCCTCTTCCTCCTTCCCTTTACCAAATAGACCATGTGGCTGAAGTCAGCG
CTGCCTTGCGTGCTTTACATTTGCCTGGATTTCACGGCAACTGGCATTGC
TCCACCGCCAAAAAAGGCTATTCAGGCACCTCAATTTTAATAAGTGAACA
AGCAGGGCTGAGTCTAGGCCCTGGGCGGGTGAAGTGCGGGATGGAGGGGG
AGGAGGACGGGGAGGGGGAAGGAAGGGTCATAACGATTGATTTTGGTGCG
TTTAGTTTGGTGAATGTCTACACGCCGAATAGTGGGGAGGGATTGAAGAG
GTTGGAGTTTCGAACCAACAGTTGGGACAGAGCATTTGAACAGCATTTGT
TGCGGTTGCAGAGGGGAGGAGAAGGAGGAAGAGGAGGAGGCGGAATAGAG
GGAGGGAGGGCGGTGTTGTGTTGTGGAGATTTGAATGTAGCGTTTGAGGA
TGCTGATTTTTACAATCCAGGCGAGCCACGGATGGCTAAGGCTGCGGGGA
CAACACCGGAGGAACGAGCGTCGTTCGGGCGCTTGTTGGAGGGAGCGGGG
ATGGTGGACACGTTCAGATTTTACCATCCGGAGGCGACGGGGTGTTATTC
GTATTGGTCGATGCGGGCAGGGAACCGGCCTTTCAATCGAGGGATGCGCC
TGGATTATTTCTTGGCAAGTCGGAATATGATGAGGGGTAAGGGGGAGGGG
AAGAAGGGAGTGCCAAGGGTGTTGGACTCGTTTATTTTGGACCAGGCGAC
GGTGGGGTTGAGCGACCATGCACCGGTTGGTGTGTTATTAGAGGTAGAGG
GAGTGGGTGGAGCGCCAGACGGGAGGGGAAAATTGGGAGACTAAAAAAGA
TGCACGTCGTGTGCTTGTGTATGCACTCTCTTGCTATTTGGCTCATGGAT
TTGGGTTTTGGTTTGTTTCTTTGCCTACCGGTCTGCTGATATTGTGTTAG
ATGCGTATGTGCCGGTCTCGCCCTTGGCGCTTGGGTAGCCTTAACCAGCG
GGGTCAAATAGCCAGCAGGCTGTCGGAAGGCATAACTCATTTTCGTCGCA
TGCACAAGAACCCGCACACCTCCTCCCCCTTCCTCCTCTCCCCTCCTTAT
TCCCCACTACCTTCTTTCTTTGCCTGTCTTCCCTCTCTCCGCCTGTCTTT
TTCCCTCTTCTTCACATTTTCTTCCTCTCCCCCTTCCCCTCTCCTCTCCT
CCTTTTGGCCGCTCTTCCCACCTTCCCTCCTCTTCCTCTTCCCTCCTCCT
GCTTTTATTTGAAAGACGCGAGCTTTATTCGCGAAAGATTGCAGGCCCCT
CCTTCCCCGCTTCCACATCCCCCTCTATTCCTCCTTTCATATTTCTCTTC
ATTCCTCTTCTTTCCACCACCTTCTTGTCATCCCCTTATTCCTTCCCGAG
CGGGGTGGTCGTACTTCATCAATTCATGTTATGTGTTTGTGGGAGTCCGG
AAATTTCGAGATTAAACCTGTTGGAATGCGAAAATTCAACCCAGTTGTAA
CACTTATATGAAAGCATGCACCTCGTCTCCTACGTGCCCGCTCCCCCCTT
CCTCGTCAACCTTATCTGTTCATCCCTTCCATGCCGTTCATCAATGCATG
CACTGCGCCTCCCCATATCCAAACGTCTGCGGCGGTTTCGACGTGTCAAT
CAATCAGTCAGTCACTCGACGTGTCATCGTCTTGTCTTTGCGACAGCCGC
AATCACCACCACTTATTAAAAAAAAACCCAGAGCACCAGCATCGTCACTC
TGCTCACGTCCTCATGCCAAATGTCCCCCCCCCCTCAACCTAGCATCCAC
AGGCCTTGCTTTAATCATGCTCAGCCCGCCAGCCTCCTCCCAGCTCCTCC
TCCTTGCCTGTTGCCTCGTCTCCTGCACCACAGCCTTCTTGAGGCCAGCG
ACCACCGCTCTCAGTACGCGGCTGTTGCTGTTGCAAGGCCGCGGCAGTGG
CAGCAAGGGTGTGAGTGGCAGCGAAAGTAAAATGACGACGACGACCACTA
TTACAGCAGTGGGGAGGTCAAAAGGGACGACGACGGCGCTTTCCTCCGCA
TACTCGGAACCCACCCCCCTGGCCAGTGACCCGCCCTTCCGCATAGGCCA
TGGATTCGACATCCACAGACTCGAGCCTGGCCTACCTTTGGTGATTGGGG
GCGTAAAGATCGACTTTGAAAAGGGGTCTGCTGCCCACTCCGACGGAGAT
GCTCTCTACCATTCAGTGACAGACGCGATTCTCGGTGCGATAGGCATGCC
CGACATCGGACAACTCTTCCCCGACAACGACCCCAAATGGAAGGGCGCAA
ATTCCTCGGCCTTCCTGAAGGAAGCCCACAGGCTAATGACGCTTCGAGGG
TACAAAATTGGGAATGTGGACGTGACGTTGATATTGCAAAAACCAAAGGT
CATGGGGATTAAGCCTCAAATGAAAGAGAATGTGGTAAGTCTGCTTCAAA
CAACCCCGGACCGTGTGAATATTAAAGCGAGGACGCACGAAAATGTGGAT
AGTGTCGGGGAGAGTAGGAGTTGGGTGGTGCATGTGGTGATATTGCTTGA
AAAGGTTTAA back to topCoding sequence (CDS) from alignment at scaffold_22:295406..299215- >mRNA_7970 ID=mRNA_7970|Name=jgi.p|Nanoce1779_2|559208|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_22:295406..299215- (Nannochloropsis oceanica)
ATGAAAGCATGCACCTCGTCTCCTACGTGCCCGCTCCCCCCTTCCTCGTC
AACCTTATCTGTTCATCCCTTCCATGCCGTTCATCAATGCATGCACTGCG
CCTCCCCATATCCAAACGTCTGCGGCGGTTTCGACGTGTCAATCAATCAG
TCAGTCACTCGACGTGTCATCGTCTTGTCTTTGCGACAGCCGCAATCACC
ACCACTTATTAAAAAAAAACCCAGAGCACCAGCATCGTCACTCTGCTCAC
GTCCTCATGCCAAATGTCCCCCCCCCCTCAACCTAGCATCCACAGGCCTT
GCTTTAATCATGCTCAGCCCGCCAGCCTCCTCCCAGCTCCTCCTCCTTGC
CTGTTGCCTCGTCTCCTGCACCACAGCCTTCTTGAGGCCAGCGACCACCG
CTCTCAGTACGCGGCTGTTGCTGTTGCAAGGCCGCGGCAGTGGCAGCAAG
GGTGTGAGTGGCAGCGAAAGTAAAATGACGACGACGACCACTATTACAGC
AGTGGGGAGGTCAAAAGGGACGACGACGGCGCTTTCCTCCGCATACTCGG
AACCCACCCCCCTGGCCAGTGACCCGCCCTTCCGCATAGGCCATGGATTC
GACATCCACAGACTCGAGCCTGGCCTACCTTTGGTGATTGGGGGCGTAAA
GATCGACTTTGAAAAGGGGTCTGCTGCCCACTCCGACGGAGATGCTCTCT
ACCATTCAGTGACAGACGCGATTCTCGGTGCGATAGGCATGCCCGACATC
GGACAACTCTTCCCCGACAACGACCCCAAATGGAAGGGCGCAAATTCCTC
GGCCTTCCTGAAGGAAGCCCACAGGCTAATGACGCTTCGAGGGTACAAAA
TTGGGAATGTGGACGTGACGTTGATATTGCAAAAACCAAAGGTCATGGGG
ATTAAGCCTCAAATGAAAGAGAATGTGGTAAGTCTGCTTCAAACAACCCC
GGACCGTGTGAATATTAAAGCGAGGACGCACGAAAATGTGGATAGTGTCG
GGGAGAGTAGGAGTTGGGTGGTGCATGTGGTGATATTGCTTGAAAAGGTT
TAA back to top
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