jgi.p|Nanoce1779_2|574179, mRNA_797 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574179
Unique NamemRNA_797
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_2:456728..457402 +

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Properties
Property NameValue
TranscriptId574265
TrackFilteredModels2
ProteinId574179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:456728..457402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574179gene_797Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574179mRNA_797-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_797CDS_797Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_797 ID=mRNA_797|Name=jgi.p|Nanoce1779_2|574179|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
CAGCAACGCTACCACAGACAACACACAACACACACAACACAAGCTCATGA
ATCGACTACCCATGCCTCCTGGTCTGGGCTCCAATGGGGAGGACCGGCCG
TCCAAGGAAACGCTGCAAAAGGCGGCTCGAGTACGAATCGACGTCATGGC
TGGGTCCATGCGCGGCCTGGGATTTGGATTGATCATTGGAGCAGGAGGGT
TTCCAATATTCAAGCGCTACATGCCGGCCACGTGGCGGACCACTAAACAC
CATGTCTTCATTGCCCTGGCGACCAGCGCGCTAGGAAGCTTTATTGGTTC
TGCGACGGCCACGCGCAATTCCCTAGAGCACGTCGTCTCGGGCATGGAGC
GAGTCGTACCGCCGGGGCAGCGGGCAGCAGACGAAGCTTTTCAACGGCGT
CAAAAAGCTATGGCGACGAGAGACCAATTGGCTAGAGGTGGACAGCGTTC
GGGAGGGGAAGGATTTTGGGTGTTGCCACCTAACAACAGCCAGGCAGTGG
GTGAGGTGGACGCTCGGGCGACTGGAACTCCTCCGGGAGCAGAGGGAAGA
CCATCAGGCCGCCGATCCACACCACCTTCCGCAACTCGATCATTCTAAAT
GTATGAAGTACGCGATATTTTAGGGTTAAAGACATTTAGTCAAAGATATA
TGTACAAGAAAATGTAAGCATGATA
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protein sequence of jgi.p|Nanoce1779_2|574179

>mRNA_797-protein ID=mRNA_797-protein|Name=jgi.p|Nanoce1779_2|574179|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MNRLPMPPGLGSNGEDRPSKETLQKAARVRIDVMAGSMRGLGFGLIIGAG
GFPIFKRYMPATWRTTKHHVFIALATSALGSFIGSATATRNSLEHVVSGM
ERVVPPGQRAADEAFQRRQKAMATRDQLARGGQRSGGEGFWVLPPNNSQA
VGEVDARATGTPPGAEGRPSGRRSTPPSATRSF*
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mRNA from alignment at scaffold_2:456728..457402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_797 ID=mRNA_797|Name=jgi.p|Nanoce1779_2|574179|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at scaffold_2:456728..457402+ (Nannochloropsis oceanica)
CAGCAACGCTACCACAGACAACACACAACACACACAACACAAGCTCATGA
ATCGACTACCCATGCCTCCTGGTCTGGGCTCCAATGGGGAGGACCGGCCG
TCCAAGGAAACGCTGCAAAAGGCGGCTCGAGTACGAATCGACGTCATGGC
TGGGTCCATGCGCGGCCTGGGATTTGGATTGATCATTGGAGCAGGAGGGT
TTCCAATATTCAAGCGCTACATGCCGGCCACGTGGCGGACCACTAAACAC
CATGTCTTCATTGCCCTGGCGACCAGCGCGCTAGGAAGCTTTATTGGTTC
TGCGACGGCCACGCGCAATTCCCTAGAGCACGTCGTCTCGGGCATGGAGC
GAGTCGTACCGCCGGGGCAGCGGGCAGCAGACGAAGCTTTTCAACGGCGT
CAAAAAGCTATGGCGACGAGAGACCAATTGGCTAGAGGTGGACAGCGTTC
GGGAGGGGAAGGATTTTGGGTGTTGCCACCTAACAACAGCCAGGCAGTGG
GTGAGGTGGACGCTCGGGCGACTGGAACTCCTCCGGGAGCAGAGGGAAGA
CCATCAGGCCGCCGATCCACACCACCTTCCGCAACTCGATCATTCTAAAT
GTATGAAGTACGCGATATTTTAGGGTTAAAGACATTTAGTCAAAGATATA
TGTACAAGAAAATGTAAGCATGATA
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Coding sequence (CDS) from alignment at scaffold_2:456728..457402+

>mRNA_797 ID=mRNA_797|Name=jgi.p|Nanoce1779_2|574179|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_2:456728..457402+ (Nannochloropsis oceanica)
ATGAATCGACTACCCATGCCTCCTGGTCTGGGCTCCAATGGGGAGGACCG
GCCGTCCAAGGAAACGCTGCAAAAGGCGGCTCGAGTACGAATCGACGTCA
TGGCTGGGTCCATGCGCGGCCTGGGATTTGGATTGATCATTGGAGCAGGA
GGGTTTCCAATATTCAAGCGCTACATGCCGGCCACGTGGCGGACCACTAA
ACACCATGTCTTCATTGCCCTGGCGACCAGCGCGCTAGGAAGCTTTATTG
GTTCTGCGACGGCCACGCGCAATTCCCTAGAGCACGTCGTCTCGGGCATG
GAGCGAGTCGTACCGCCGGGGCAGCGGGCAGCAGACGAAGCTTTTCAACG
GCGTCAAAAAGCTATGGCGACGAGAGACCAATTGGCTAGAGGTGGACAGC
GTTCGGGAGGGGAAGGATTTTGGGTGTTGCCACCTAACAACAGCCAGGCA
GTGGGTGAGGTGGACGCTCGGGCGACTGGAACTCCTCCGGGAGCAGAGGG
AAGACCATCAGGCCGCCGATCCACACCACCTTCCGCAACTCGATCATTCT
AA
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Synonyms
Publications