jgi.p|Nanoce1779_2|600723, mRNA_7969 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600723
Unique NamemRNA_7969
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1428
Alignment locationscaffold_22:293896..295323 -

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Properties
Property NameValue
TranscriptId600809
TrackFilteredModels2
ProteinId600723
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:293896..295323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600723gene_7969Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600723mRNA_7969-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7969CDS_7969Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7969 ID=mRNA_7969|Name=jgi.p|Nanoce1779_2|600723|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
AGCGAATAAAGATTGTGATGGATTGCGGATATTGTGGTACTTGTAGTTTC
GATTTTAGTTGGTAGGAGCAGACATGGGGGTGGGAGCATTGTCTGTCTGT
CTTTCATGTCATCTGCTTTTTTCCGGTTCATCATCTTTGTTTTCTTTTCA
TGACATACTACACCTGTCTGTTGCTTTTGTTGTTTTCAAACATTCAGTTC
TCTTCCTCCTTCGTCTACCCATCATACCTCGATTCTCACTCTGCTCCTCG
CCGTCACTCTGCCATGAGAAACCCTCTCTTTCTCTCCTTCTCCTTCTATC
TCCTTGTCTTCCTTCTCTTCTCCCTTCCTTTCATTTACTAAAAAAAATGC
TGCTGGTGGTCAATTTATGTCATGCCTGTATGCGTGCACCAATCCACAAG
CAGGCAAGCTATCAAGCAAATTTGTCTTAAAAGAAAGCAGCAGCCCACAG
TCCCTCTATGTCCTTCGAATTCAAAGTGCTATGCATATGAGAGTGTGATG
GCTCAGAGTGCCGCTCATTTTCGCCTCGCTTTGCCTGAACCGCCGGTCCG
GCATGGCGCTTAGTGGTTGTCCTCGCCTCCTTAGACCTTAGTGAGTGACC
ACGAAATACTTTGTGAGTCACTATTCTTGCTATTATAGTTCTTGCTCTTG
TTCCTACTCTTGTTGCCCCTTCTCAGTCTTGTTTTTGGTTCCGTCCCCTC
TCTCTATCCTTTCCTCACTCCATTGTTCCCGACTTGATCATCAAACTTGG
GGCCACTCTTGCCGTCCCTTCTCTCCTTACGCTCCCCCTCTCTTTTCCCC
TCAAGTGATACGCTTGGAACTCGTATTTTTTCATCATTTACTTTTTTCTA
TCTTTCTCTACATCATGTGCTTATGAGTAAATCGACTTCTGCCACCTGGC
AGCAGAACCAAAAAAAGCACAAAGAGGAAAAGGAAGAAACAATCCGGAGG
TTCCCCCACATGCCCTTATACCCACACACAAACACACCCACCTCCAGACA
GACACAGATACACACCCCTTCCTGTTGTTTAAAAGTTTACACCTAGTTAT
ACACTCGTCACGCCACCAAGGCCTCGCCCTCATTTCCCTTCCATGAAGGA
GAGAAGAAAGGGAGAGAACAAAGACTGCCCGATGCGTACGCAGGCTGCAA
ACACTGTACATGTAGTACACTACACGTCTCGCTGGCTATCATGGTCTGCC
TACTTATTATACGAATGCGCACATTTCTCGCCTTTCTCCTGCCTTTGTCA
TCCAGGGAGGGACGTCTTAACGAAAGAAAAAATGGGTGACAAAATCATAG
ACAAAGGCACACAACAAAACGAGAAATTTGTCCTCCTCCTCCTCCTACTA
CCACTCTTGCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTCCTACCCAAG
CTTATAGCTGGAAATGGCATTGTCCCCC
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protein sequence of jgi.p|Nanoce1779_2|600723

>mRNA_7969-protein ID=mRNA_7969-protein|Name=jgi.p|Nanoce1779_2|600723|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MGVGALSVCLSCHLLFSGSSSLFSFHDILHLSVAFVVFKHSVLFLLRLPI
IPRFSLCSSPSLCHEKPSLSLLLLLSPCLPSLLPSFHLLKKMLLVVNLCH
ACMRAPIHKQASYQANLS*
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mRNA from alignment at scaffold_22:293896..295323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7969 ID=mRNA_7969|Name=jgi.p|Nanoce1779_2|600723|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at scaffold_22:293896..295323- (Nannochloropsis oceanica)
AGCGAATAAAGATTGTGATGGATTGCGGATATTGTGGTACTTGTAGTTTC
GATTTTAGTTGGTAGGAGCAGACATGGGGGTGGGAGCATTGTCTGTCTGT
CTTTCATGTCATCTGCTTTTTTCCGGTTCATCATCTTTGTTTTCTTTTCA
TGACATACTACACCTGTCTGTTGCTTTTGTTGTTTTCAAACATTCAGTTC
TCTTCCTCCTTCGTCTACCCATCATACCTCGATTCTCACTCTGCTCCTCG
CCGTCACTCTGCCATGAGAAACCCTCTCTTTCTCTCCTTCTCCTTCTATC
TCCTTGTCTTCCTTCTCTTCTCCCTTCCTTTCATTTACTAAAAAAAATGC
TGCTGGTGGTCAATTTATGTCATGCCTGTATGCGTGCACCAATCCACAAG
CAGGCAAGCTATCAAGCAAATTTGTCTTAAAAGAAAGCAGCAGCCCACAG
TCCCTCTATGTCCTTCGAATTCAAAGTGCTATGCATATGAGAGTGTGATG
GCTCAGAGTGCCGCTCATTTTCGCCTCGCTTTGCCTGAACCGCCGGTCCG
GCATGGCGCTTAGTGGTTGTCCTCGCCTCCTTAGACCTTAGTGAGTGACC
ACGAAATACTTTGTGAGTCACTATTCTTGCTATTATAGTTCTTGCTCTTG
TTCCTACTCTTGTTGCCCCTTCTCAGTCTTGTTTTTGGTTCCGTCCCCTC
TCTCTATCCTTTCCTCACTCCATTGTTCCCGACTTGATCATCAAACTTGG
GGCCACTCTTGCCGTCCCTTCTCTCCTTACGCTCCCCCTCTCTTTTCCCC
TCAAGTGATACGCTTGGAACTCGTATTTTTTCATCATTTACTTTTTTCTA
TCTTTCTCTACATCATGTGCTTATGAGTAAATCGACTTCTGCCACCTGGC
AGCAGAACCAAAAAAAGCACAAAGAGGAAAAGGAAGAAACAATCCGGAGG
TTCCCCCACATGCCCTTATACCCACACACAAACACACCCACCTCCAGACA
GACACAGATACACACCCCTTCCTGTTGTTTAAAAGTTTACACCTAGTTAT
ACACTCGTCACGCCACCAAGGCCTCGCCCTCATTTCCCTTCCATGAAGGA
GAGAAGAAAGGGAGAGAACAAAGACTGCCCGATGCGTACGCAGGCTGCAA
ACACTGTACATGTAGTACACTACACGTCTCGCTGGCTATCATGGTCTGCC
TACTTATTATACGAATGCGCACATTTCTCGCCTTTCTCCTGCCTTTGTCA
TCCAGGGAGGGACGTCTTAACGAAAGAAAAAATGGGTGACAAAATCATAG
ACAAAGGCACACAACAAAACGAGAAATTTGTCCTCCTCCTCCTCCTACTA
CCACTCTTGCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTCCTACCCAAG
CTTATAGCTGGAAATGGCATTGTCCCCC
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Coding sequence (CDS) from alignment at scaffold_22:293896..295323-

>mRNA_7969 ID=mRNA_7969|Name=jgi.p|Nanoce1779_2|600723|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_22:293896..295323- (Nannochloropsis oceanica)
ATGGGGGTGGGAGCATTGTCTGTCTGTCTTTCATGTCATCTGCTTTTTTC
CGGTTCATCATCTTTGTTTTCTTTTCATGACATACTACACCTGTCTGTTG
CTTTTGTTGTTTTCAAACATTCAGTTCTCTTCCTCCTTCGTCTACCCATC
ATACCTCGATTCTCACTCTGCTCCTCGCCGTCACTCTGCCATGAGAAACC
CTCTCTTTCTCTCCTTCTCCTTCTATCTCCTTGTCTTCCTTCTCTTCTCC
CTTCCTTTCATTTACTAAAAAAAATGCTGCTGGTGGTCAATTTATGTCAT
GCCTGTATGCGTGCACCAATCCACAAGCAGGCAAGCTATCAAGCAAATTT
GTCTTAA
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Synonyms
Publications