jgi.p|Nanoce1779_2|600722, mRNA_7968 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600722
Unique Name	mRNA_7968
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1935
Alignment location	scaffold_22:292048..293982 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600808
Track	FilteredModels2
ProteinId	600722

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:292048..293982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600722	gene_7968	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600722	mRNA_7968-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7968	CDS_7968	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:292048..293982+
coding sequence from alignment at scaffold_22:292048..293982+

mRNA sequence

>mRNA_7968 ID=mRNA_7968|Name=jgi.p|Nanoce1779_2|600722|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
AGGGCCAAGAGTGTACGCGGGCAGCAAAGCGAGTGACCATCTCCGCAGCT
CAATCCCAGCCCCAGCCTCCCCGCCCCGACTCCTTCCCCTCCTTCCGTCC
CTGGCACTCCGCAGCGGAGATCTACACTTCTTATTCACATTTCCCACGCA
CCACAATCATGAATTATCCTGCCCGCCGGTGGAAAGGCCGCATCAAGGCC
ACTATCATGGCAGCCGCTTTCCTCGGCATGTCCTGCTCCTGCTGCGCCAC
AGCCTCTGACGGGGTAAGAGATGGCAGCAGCGGAAATAGTGGCGGCCCCA
TGCAAGCGGGTGGGCTGAGCACAACCAGCCCTTTCCAACGACAGTACGTG
CGTCGACGCGAAGACGGGGACAAAGACAACAACCCCCTCGCCATCTCTCC
TTCGGCGCCCCGCCCCTCCGCCGCAACCGCCGCCCTCGATCTTGTACTAC
CGGATGGCCAAGACATAATACTTGCCCCTGACGGTGGCAACGACAAGAGT
AACCTCCCCGACCTCCATGTCCTCTTCCTCCAGCAATACGGCCTGACCAA
AGGCCCAGGCCCGCTCTCCCTCTCCACGGACAAAAAGAACCTCTACGCAG
TCACTGGGGAAGCCCTCTACTCCTTCAGCACCACCCCCAGCTCGGGGAAA
ATCGACAAAATCCAAGAAATGAGAGACGGGGTGGTGGATCGCAACGGAAG
AAAGGTTGAGTATTTCACCGGGTTGACAGCTCTGACCCTCTCGCCGGACG
ACCAGAATGTCTACACCGTGGGAACCTCTGTCATGCCTGGCGTGGGGGGG
ATAACGGTGCTCAAGAGGAATGAGAACGGAGAGCTGAGCCTGGTGCAGCA
GTACAGGATCGATCAGCGTGCGGACATTATGGATATTGAAGGGATGATTG
GTGCCAACTCCGTCGCTGTTTCCCCTGATGGGAAATATACCTATGTCTCC
TCCGGCGGCTACTACCGGGATCACAACCTCCTCGTGTTCTCCCGTTCTCC
CCATACGGGGAATCTGACCTTGATCCAGAACATCGATGTTTATAACACCT
CAGCCTCGAGGGTACTGCCCTCCACTCTAGTCGTGGCCCCGGACGGGAAG
CACGTGTACGTGGTAGGGGACAACTTTGCCATCTCCACCTCGGTCATCCT
GGTCTACGGAGTGGAGGAGGACGGTACCCTGACCCAGACGCAGGAAGCGG
GCCCCTTCCGCTCTACCCTCTTGACGAGCGCCACCTTTGATCCGTCTGGG
GCCTTCCTGTACAGCACGGCCAGTCTGGGTACGTTCTCGCCTCCCTCCCT
CTTTCCCTCCCTCACTCCCTCCTCACTCACTCTTGCTTCTCTGTCCTTGA
AACTCCATAATAAGCGGTCTCTATCCGCGCATAAACGGTCTCTGATTCCA
GCCCCCCTCCCTCTCTCCCTCTCTCCCCCTTCTCTCTCTCTCTAACTCTC
TCTATCTCTTTTCCTCCCTCCCTTCCCAAAGGCAACAACCTCGTCTGGAT
CTTCCAACGCCAGCCCGACGGCCGACTCACCACCGTCATCGACCCTGTCA
TCCTTCCCTCCCTTACTTCTCCCTCTTCCGGGCAACGAGATGAAGTTCCT
GCCCCCCAGGGGTCTTACTCGTCCTCCCTCGCCCTCGAGCATCCGCTGCT
CGGCCCGTTGTTGCTGGTGAGTGTGGAGAAAGATAACGTCGTACACGCTG
CGGTGCGTCAGACGGGGGAGGGGCAGCAGGGACGGTTGATCTACCTTCGG
GGAGAGATAGGAGGGGAGGGAGGAAAGGAGGGAAGGTTGAATCGCCCGTC
GAGCATGGCCTGGGATGAAACCGCTGAGGTGTTGTATGTGAGTGAGACGG
GGGACAATGCCATTTCCAGCTATAAGCTTGGGTAGGAGGAGGGAAGGAGG
GAGGGAGGGAGGGAGGGCAAGAGTGGTAGTAGGAG

protein sequence of jgi.p|Nanoce1779_2|600722

>mRNA_7968-protein ID=mRNA_7968-protein|Name=jgi.p|Nanoce1779_2|600722|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MNYPARRWKGRIKATIMAAAFLGMSCSCCATASDGVRDGSSGNSGGPMQA
GGLSTTSPFQRQYVRRREDGDKDNNPLAISPSAPRPSAATAALDLVLPDG
QDIILAPDGGNDKSNLPDLHVLFLQQYGLTKGPGPLSLSTDKKNLYAVTG
EALYSFSTTPSSGKIDKIQEMRDGVVDRNGRKVEYFTGLTALTLSPDDQN
VYTVGTSVMPGVGGITVLKRNENGELSLVQQYRIDQRADIMDIEGMIGAN
SVAVSPDGKYTYVSSGGYYRDHNLLVFSRSPHTGNLTLIQNIDVYNTSAS
RVLPSTLVVAPDGKHVYVVGDNFAISTSVILVYGVEEDGTLTQTQEAGPF
RSTLLTSATFDPSGAFLYSTASLGTFSPPSLFPSLTPSSLTLASLSLKLH
NKRSLSAHKRSLIPAPLPLSLSPPSLSL*

mRNA from alignment at scaffold_22:292048..293982+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7968 ID=mRNA_7968|Name=jgi.p|Nanoce1779_2|600722|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at scaffold_22:292048..293982+ (Nannochloropsis oceanica)
AGGGCCAAGAGTGTACGCGGGCAGCAAAGCGAGTGACCATCTCCGCAGCT
CAATCCCAGCCCCAGCCTCCCCGCCCCGACTCCTTCCCCTCCTTCCGTCC
CTGGCACTCCGCAGCGGAGATCTACACTTCTTATTCACATTTCCCACGCA
CCACAATCATGAATTATCCTGCCCGCCGGTGGAAAGGCCGCATCAAGGCC
ACTATCATGGCAGCCGCTTTCCTCGGCATGTCCTGCTCCTGCTGCGCCAC
AGCCTCTGACGGGGTAAGAGATGGCAGCAGCGGAAATAGTGGCGGCCCCA
TGCAAGCGGGTGGGCTGAGCACAACCAGCCCTTTCCAACGACAGTACGTG
CGTCGACGCGAAGACGGGGACAAAGACAACAACCCCCTCGCCATCTCTCC
TTCGGCGCCCCGCCCCTCCGCCGCAACCGCCGCCCTCGATCTTGTACTAC
CGGATGGCCAAGACATAATACTTGCCCCTGACGGTGGCAACGACAAGAGT
AACCTCCCCGACCTCCATGTCCTCTTCCTCCAGCAATACGGCCTGACCAA
AGGCCCAGGCCCGCTCTCCCTCTCCACGGACAAAAAGAACCTCTACGCAG
TCACTGGGGAAGCCCTCTACTCCTTCAGCACCACCCCCAGCTCGGGGAAA
ATCGACAAAATCCAAGAAATGAGAGACGGGGTGGTGGATCGCAACGGAAG
AAAGGTTGAGTATTTCACCGGGTTGACAGCTCTGACCCTCTCGCCGGACG
ACCAGAATGTCTACACCGTGGGAACCTCTGTCATGCCTGGCGTGGGGGGG
ATAACGGTGCTCAAGAGGAATGAGAACGGAGAGCTGAGCCTGGTGCAGCA
GTACAGGATCGATCAGCGTGCGGACATTATGGATATTGAAGGGATGATTG
GTGCCAACTCCGTCGCTGTTTCCCCTGATGGGAAATATACCTATGTCTCC
TCCGGCGGCTACTACCGGGATCACAACCTCCTCGTGTTCTCCCGTTCTCC
CCATACGGGGAATCTGACCTTGATCCAGAACATCGATGTTTATAACACCT
CAGCCTCGAGGGTACTGCCCTCCACTCTAGTCGTGGCCCCGGACGGGAAG
CACGTGTACGTGGTAGGGGACAACTTTGCCATCTCCACCTCGGTCATCCT
GGTCTACGGAGTGGAGGAGGACGGTACCCTGACCCAGACGCAGGAAGCGG
GCCCCTTCCGCTCTACCCTCTTGACGAGCGCCACCTTTGATCCGTCTGGG
GCCTTCCTGTACAGCACGGCCAGTCTGGGTACGTTCTCGCCTCCCTCCCT
CTTTCCCTCCCTCACTCCCTCCTCACTCACTCTTGCTTCTCTGTCCTTGA
AACTCCATAATAAGCGGTCTCTATCCGCGCATAAACGGTCTCTGATTCCA
GCCCCCCTCCCTCTCTCCCTCTCTCCCCCTTCTCTCTCTCTCTAACTCTC
TCTATCTCTTTTCCTCCCTCCCTTCCCAAAGGCAACAACCTCGTCTGGAT
CTTCCAACGCCAGCCCGACGGCCGACTCACCACCGTCATCGACCCTGTCA
TCCTTCCCTCCCTTACTTCTCCCTCTTCCGGGCAACGAGATGAAGTTCCT
GCCCCCCAGGGGTCTTACTCGTCCTCCCTCGCCCTCGAGCATCCGCTGCT
CGGCCCGTTGTTGCTGGTGAGTGTGGAGAAAGATAACGTCGTACACGCTG
CGGTGCGTCAGACGGGGGAGGGGCAGCAGGGACGGTTGATCTACCTTCGG
GGAGAGATAGGAGGGGAGGGAGGAAAGGAGGGAAGGTTGAATCGCCCGTC
GAGCATGGCCTGGGATGAAACCGCTGAGGTGTTGTATGTGAGTGAGACGG
GGGACAATGCCATTTCCAGCTATAAGCTTGGGTAGGAGGAGGGAAGGAGG
GAGGGAGGGAGGGAGGGCAAGAGTGGTAGTAGGAG

Coding sequence (CDS) from alignment at scaffold_22:292048..293982+

>mRNA_7968 ID=mRNA_7968|Name=jgi.p|Nanoce1779_2|600722|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_22:292048..293982+ (Nannochloropsis oceanica)
ATGAATTATCCTGCCCGCCGGTGGAAAGGCCGCATCAAGGCCACTATCAT
GGCAGCCGCTTTCCTCGGCATGTCCTGCTCCTGCTGCGCCACAGCCTCTG
ACGGGGTAAGAGATGGCAGCAGCGGAAATAGTGGCGGCCCCATGCAAGCG
GGTGGGCTGAGCACAACCAGCCCTTTCCAACGACAGTACGTGCGTCGACG
CGAAGACGGGGACAAAGACAACAACCCCCTCGCCATCTCTCCTTCGGCGC
CCCGCCCCTCCGCCGCAACCGCCGCCCTCGATCTTGTACTACCGGATGGC
CAAGACATAATACTTGCCCCTGACGGTGGCAACGACAAGAGTAACCTCCC
CGACCTCCATGTCCTCTTCCTCCAGCAATACGGCCTGACCAAAGGCCCAG
GCCCGCTCTCCCTCTCCACGGACAAAAAGAACCTCTACGCAGTCACTGGG
GAAGCCCTCTACTCCTTCAGCACCACCCCCAGCTCGGGGAAAATCGACAA
AATCCAAGAAATGAGAGACGGGGTGGTGGATCGCAACGGAAGAAAGGTTG
AGTATTTCACCGGGTTGACAGCTCTGACCCTCTCGCCGGACGACCAGAAT
GTCTACACCGTGGGAACCTCTGTCATGCCTGGCGTGGGGGGGATAACGGT
GCTCAAGAGGAATGAGAACGGAGAGCTGAGCCTGGTGCAGCAGTACAGGA
TCGATCAGCGTGCGGACATTATGGATATTGAAGGGATGATTGGTGCCAAC
TCCGTCGCTGTTTCCCCTGATGGGAAATATACCTATGTCTCCTCCGGCGG
CTACTACCGGGATCACAACCTCCTCGTGTTCTCCCGTTCTCCCCATACGG
GGAATCTGACCTTGATCCAGAACATCGATGTTTATAACACCTCAGCCTCG
AGGGTACTGCCCTCCACTCTAGTCGTGGCCCCGGACGGGAAGCACGTGTA
CGTGGTAGGGGACAACTTTGCCATCTCCACCTCGGTCATCCTGGTCTACG
GAGTGGAGGAGGACGGTACCCTGACCCAGACGCAGGAAGCGGGCCCCTTC
CGCTCTACCCTCTTGACGAGCGCCACCTTTGATCCGTCTGGGGCCTTCCT
GTACAGCACGGCCAGTCTGGGTACGTTCTCGCCTCCCTCCCTCTTTCCCT
CCCTCACTCCCTCCTCACTCACTCTTGCTTCTCTGTCCTTGAAACTCCAT
AATAAGCGGTCTCTATCCGCGCATAAACGGTCTCTGATTCCAGCCCCCCT
CCCTCTCTCCCTCTCTCCCCCTTCTCTCTCTCTCTAA

Synonyms

Publications