jgi.p|Nanoce1779_2|600719, mRNA_7967 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600719
Unique NamemRNA_7967
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_22:290145..291592 +

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Properties
Property NameValue
TranscriptId600805
TrackFilteredModels2
ProteinId600719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:290145..291592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600719gene_7967Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600719mRNA_7967-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7967CDS_7967Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7967 ID=mRNA_7967|Name=jgi.p|Nanoce1779_2|600719|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
ACAGGCACCCCACAACACGATGCCAGCTTGCGTACACATCGGTGGGGCCG
CTGCCGCGGCCTCGTCCTCCTTCCCCTATCTTCTTGCAGCGACTGTAATG
ACAACAAGAAAATTTTGGGGTACATATGACGGCATCATCAAACCCACGCG
GCGATCGCCCCAGACCCACCGTGGATGCTCTCGGACCTTCTTGTCGCAAG
CAGGCAGCGACTGGGAAGAATCTTGGCGGCGTGGCACGACGCCCTGGGAC
ACAAAAGGAGCCGCTCCTCCCCTCCTCAACCTACTTCAACGACCTTCCTC
CCCCCTCAGACCACCCGTCCCTGGCGTCAGTCGTGCCTTGGTGCCTGGCG
CTGGGTCGGGGTACGAATGCGCTGCCTTGGCTGAAGCAGGTTGGGATGTT
TTAGGGTTAGACTTGGCACCCACTGCGGTGGCCAGGGCTAAGGCCTTGTG
GGAGGAGAGGCAAGGCAGAAACGATTTGGGAGAGGACACTGGCGACGGCA
GATTGACATACAAAGTGGGGAATTTCTACGACCTGGAAGGGCGGTTTGAT
TTGATATTTGATTATACCTTCCTCTGTGCTCTTCCGCCAGACGAACGCCC
GCGCTGGGCCCAAAAGATGCGACAACTGCTGATGCCCCAGAAAGGCCAGC
TCGTCACTCTCATCTTTCCCGTGTTCGATTACAGCAAGAATGTTCAGGCT
CTGAACCTCACAGATGGGCCACCTTTTGAAGTCACCCCAGCCCTGTATTG
CCATCTTCTCCTGGGGGAGGAGGAAGGAGGGAGAAAAGGAGGGAGGAAAG
GAGTTTTTACATGTTTGGAATTGACCGGGCCGTTGTCGGATTCAATCTCG
CCGAGAAAGGGTAGGGAGTGGTTGGGCAGGTGGTCGTTGAGGGAGTCGGA
CGAGGAGGAATGCAAGAGTTGAAGAGTGCTGGTGCTGGTGGTGGTAGTGG
TGATGCTGCTGCTGTTGCTGCTGGGGCAAGCAAGGCCACACTCCGATATC
GGCATTCAAAGTTAACTCGATAGCATCAAATCCACATCAAATGATAGGCC
AAGGCTGATTTTGGTTTCTCTTTTGTTTTTGGAACAAGAATTGTTCAGGC
TTTGGCGAGTGGCCTGGGCGGGGGAGCGGGGTCACGCAAGAAAGTAGATT
TACTACGCTGTATATCAATACAAAAGACAATAGCCGTGAATTCCAGCTA
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protein sequence of jgi.p|Nanoce1779_2|600719

>mRNA_7967-protein ID=mRNA_7967-protein|Name=jgi.p|Nanoce1779_2|600719|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MPACVHIGGAAAAASSSFPYLLAATVMTTRKFWGTYDGIIKPTRRSPQTH
RGCSRTFLSQAGSDWEESWRRGTTPWDTKGAAPPLLNLLQRPSSPLRPPV
PGVSRALVPGAGSGYECAALAEAGWDVLGLDLAPTAVARAKALWEERQGR
NDLGEDTGDGRLTYKVGNFYDLEGRFDLIFDYTFLCALPPDERPRWAQKM
RQLLMPQKGQLVTLIFPVFDYSKNVQALNLTDGPPFEVTPALYCHLLLGE
EEGGRKGGRKGVFTCLELTGPLSDSISPRKGREWLGRWSLRESDEEECKS
*
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mRNA from alignment at scaffold_22:290145..291592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7967 ID=mRNA_7967|Name=jgi.p|Nanoce1779_2|600719|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp|location=Sequence derived from alignment at scaffold_22:290145..291592+ (Nannochloropsis oceanica)
ACAGGCACCCCACAACACGATGCCAGCTTGCGTACACATCGGTGGGGCCG
CTGCCGCGGCCTCGTCCTCCTTCCCCTATCTTCTTGCAGCGACTGTAATG
ACAACAAGAAAATTTTGGGGTACATATGACGGCATCATCAAACCCACGCG
GCGATCGCCCCAGACCCACCGTGGATGCTCTCGGACCTTCTTGTCGCAAG
CAGGCAGCGACTGGGAAGAATCTTGGCGGCGTGGCACGACGCCCTGGGAC
ACAAAAGGTGAGCACGACGCCTCAAAATAGGTCCCTTCTGCTACCATACG
TCCCCACCTAGCCTCCTTCCATTATCGTATATCGTTGTCTCTTTAGCCCC
CAACTCCCATTCCCTTGCCTTCCCATCGAAACCCCCAGGAGCCGCTCCTC
CCCTCCTCAACCTACTTCAACGACCTTCCTCCCCCCTCAGACCACCCGTC
CCTGGCGTCAGTCGTGCCTTGGTGCCTGGCGCTGGGTCGGGGTACGAATG
CGCTGCCTTGGCTGAAGCAGGTTGGGATGTTTTAGGGTTAGACTTGGCAC
CCACTGCGGTGGCCAGGGCTAAGGCCTTGTGGGAGGAGAGGCAAGGCAGA
AACGATTTGGGAGAGGACACTGGCGACGGCAGATTGACATACAAAGTGGG
GAATTTCTACGACCTGGAAGGGCGGTTTGATTTGATATTTGATTATACCT
TCCTCTGTGCTCTTCCGCCAGACGAACGCCCGCGCTGGGCCCAAAAGATG
CGACAACTGCTGATGCCCCAGAAAGGTAAGGAGCTTGAGAACCTCCCGCA
AGTACTGAATCGATTGTCCACTTTCCTTTATACCCTGCCCCATCTTCTCC
TTACCCTCCTCCACCTCCTCCTCCGCTCCCTCCTTCCCCTCAGGCCAGCT
CGTCACTCTCATCTTTCCCGTGTTCGATTACAGCAAGAATGTTCAGGCTC
TGAACCTCACAGATGGGCCACCTTTTGAAGTCACCCCAGCCCTGTATTGC
CATCTTCTCCTGGGGGAGGAGGAAGGAGGGAGAAAAGGAGGGAGGAAAGG
AGTTTTTACATGTTTGGAATTGACCGGGCCGTTGTCGGATTCAATCTCGC
CGAGAAAGGGTAGGGAGTGGTTGGGCAGGTGGTCGTTGAGGGAGTCGGAC
GAGGAGGAATGCAAGAGTTGAAGAGTGCTGGTGCTGGTGGTGGTAGTGGT
GATGCTGCTGCTGTTGCTGCTGGGGCAAGCAAGGCCACACTCCGATATCG
GCATTCAAAGTTAACTCGATAGCATCAAATCCACATCAAATGATAGGCCA
AGGCTGATTTTGGTTTCTCTTTTGTTTTTGGAACAAGAATTGTTCAGGCT
TTGGCGAGTGGCCTGGGCGGGGGAGCGGGGTCACGCAAGAAAGTAGATTT
ACTACGCTGTATATCAATACAAAAGACAATAGCCGTGAATTCCAGCTA
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Coding sequence (CDS) from alignment at scaffold_22:290145..291592+

>mRNA_7967 ID=mRNA_7967|Name=jgi.p|Nanoce1779_2|600719|organism=Nannochloropsis oceanica|type=CDS|length=2709bp|location=Sequence derived from alignment at scaffold_22:290145..291592+ (Nannochloropsis oceanica)
ATGCCAGCTTGCGTACACATCGGTGGGGCCGCTGCCGCGGCCTCGTCCTC
CTTCCCCTATCTTCTTGCAGCGACTGTAATGACAACAAGAAAATTTTGGG
GTACATATGACGGCATCATCAAACCCACGCGGCGATCGCCCCAGACCCAC
CGTGGATGCTCTCGGACCTTCTTGTCGCAAGCAGGCAGCGACTGGGAAGA
ATCTTGGCGGCGTGGCACGACGCCCTGGGACACAAAAGGAGCCGCTCCTC
CCCTCCTCAACCTACTTCAACGACCTTCCTCCCCCCTCAGACCACCCGTC
CCTGGCGTCAGTCGTGCCTTGGTGCCTGGCGCTGGGTCGGGGTACGAATG
CGCTGCCTTGGCTGAAGCAGGTTGGGATGTTTTAGGGTTAGACTTGGCAC
CCACTGCGGTGGCCAGGGCTAAGGCCTTGTGGGAGGAGAGGCAAGGCAGA
AACGATTTGGGAGAGGACACTGGCGACGGCAGATTGACATACAAAGTGGG
GAATTTCTACGACCTGGAAGGGCGGTTTGATTTGATATTTGATTATACCT
TCCTCTGTGCTCTTCCGCCAGACGAACGCCCGCGCTGGGCCCAAAAGATG
CGACAACTGCTGATGCCCCAGAAAGGCCAGCTCGTCACTCTCATCTTTCC
CGTGTTCGATTACAGCAAGAATGTTCAGGCTCTGAACCTCACAGATGGGC
CACCTTTTGAAGTCACCCCAGCCCTGTATTGCCATCTTCTCCTGGGGGAG
GAGGAAGGAGGGAGAAAAGGAGGGAGGAAAGGAGTTTTTACATGTTTGGA
ATTGACCGGGCCGTTGTCGGATTCAATCTCGCCGAGAAAGGGTAGGGAGT
GGTTGGGCAGGTGGTCGTTGAGGGAGTCGGACGAGGAGGAATGCAAGAGT
TGAATGCCAGCTTGCGTACACATCGGTGGGGCCGCTGCCGCGGCCTCGTC
CTCCTTCCCCTATCTTCTTGCAGCGACTGTAATGACAACAAGAAAATTTT
GGGGTACATATGACGGCATCATCAAACCCACGCGGCGATCGCCCCAGACC
CACCGTGGATGCTCTCGGACCTTCTTGTCGCAAGCAGGCAGCGACTGGGA
AGAATCTTGGCGGCGTGGCACGACGCCCTGGGACACAAAAGGAGCCGCTC
CTCCCCTCCTCAACCTACTTCAACGACCTTCCTCCCCCCTCAGACCACCC
GTCCCTGGCGTCAGTCGTGCCTTGGTGCCTGGCGCTGGGTCGGGGTACGA
ATGCGCTGCCTTGGCTGAAGCAGGTTGGGATGTTTTAGGGTTAGACTTGG
CACCCACTGCGGTGGCCAGGGCTAAGGCCTTGTGGGAGGAGAGGCAAGGC
AGAAACGATTTGGGAGAGGACACTGGCGACGGCAGATTGACATACAAAGT
GGGGAATTTCTACGACCTGGAAGGGCGGTTTGATTTGATATTTGATTATA
CCTTCCTCTGTGCTCTTCCGCCAGACGAACGCCCGCGCTGGGCCCAAAAG
ATGCGACAACTGCTGATGCCCCAGAAAGGCCAGCTCGTCACTCTCATCTT
TCCCGTGTTCGATTACAGCAAGAATGTTCAGGCTCTGAACCTCACAGATG
GGCCACCTTTTGAAGTCACCCCAGCCCTGTATTGCCATCTTCTCCTGGGG
GAGGAGGAAGGAGGGAGAAAAGGAGGGAGGAAAGGAGTTTTTACATGTTT
GGAATTGACCGGGCCGTTGTCGGATTCAATCTCGCCGAGAAAGGGTAGGG
AGTGGTTGGGCAGGTGGTCGTTGAGGGAGTCGGACGAGGAGGAATGCAAG
AGTTGAATGCCAGCTTGCGTACACATCGGTGGGGCCGCTGCCGCGGCCTC
GTCCTCCTTCCCCTATCTTCTTGCAGCGACTGTAATGACAACAAGAAAAT
TTTGGGGTACATATGACGGCATCATCAAACCCACGCGGCGATCGCCCCAG
ACCCACCGTGGATGCTCTCGGACCTTCTTGTCGCAAGCAGGCAGCGACTG
GGAAGAATCTTGGCGGCGTGGCACGACGCCCTGGGACACAAAAGGAGCCG
CTCCTCCCCTCCTCAACCTACTTCAACGACCTTCCTCCCCCCTCAGACCA
CCCGTCCCTGGCGTCAGTCGTGCCTTGGTGCCTGGCGCTGGGTCGGGGTA
CGAATGCGCTGCCTTGGCTGAAGCAGGTTGGGATGTTTTAGGGTTAGACT
TGGCACCCACTGCGGTGGCCAGGGCTAAGGCCTTGTGGGAGGAGAGGCAA
GGCAGAAACGATTTGGGAGAGGACACTGGCGACGGCAGATTGACATACAA
AGTGGGGAATTTCTACGACCTGGAAGGGCGGTTTGATTTGATATTTGATT
ATACCTTCCTCTGTGCTCTTCCGCCAGACGAACGCCCGCGCTGGGCCCAA
AAGATGCGACAACTGCTGATGCCCCAGAAAGGCCAGCTCGTCACTCTCAT
CTTTCCCGTGTTCGATTACAGCAAGAATGTTCAGGCTCTGAACCTCACAG
ATGGGCCACCTTTTGAAGTCACCCCAGCCCTGTATTGCCATCTTCTCCTG
GGGGAGGAGGAAGGAGGGAGAAAAGGAGGGAGGAAAGGAGTTTTTACATG
TTTGGAATTGACCGGGCCGTTGTCGGATTCAATCTCGCCGAGAAAGGGTA
GGGAGTGGTTGGGCAGGTGGTCGTTGAGGGAGTCGGACGAGGAGGAATGC
AAGAGTTGA
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Synonyms
Publications