jgi.p|Nanoce1779_2|179368, mRNA_7965 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|179368
Unique NamemRNA_7965
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length965
Alignment locationscaffold_22:286683..287647 +

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Properties
Property NameValue
TranscriptId179454
TrackFilteredModels2
ProteinId179368
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:286683..287647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179368gene_7965Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179368mRNA_7965-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7965CDS_7965Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7965 ID=mRNA_7965|Name=jgi.p|Nanoce1779_2|179368|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
CCCTCACCCCTCCGGGAGAGAGTACAGCTTATCGCCGTGGCTCATCCACA
TCTGAAAGCTCTAGGGTAAACCCTTACATAAGACATCGGCCGCCTCCTCG
TGGCCCTGCAAATCAATCTCCTTGCAATTCATCCTCCTCGTTCTCCTCCC
AATCCTTCATCTCCGCCGCCGTTGGGTAAACATGCCCGTCTATGTGCCGG
TACTTCATGACCATGAGGTCATCCATCGTTTGTTCGTGCATGCATCCCGA
AGGTCATTCCATACTGAGAGAGGACGCGCTCCGCATCTGTATGGAGAGAA
CGCGCTGCCAGCCGCGACGAGTAAGGGTACTCGTTCCGCCTCATCCCCCT
AGCCCACCACTCCGGGGCCATGTCGTAGTCGAAAATGGGGACCTTCAGCC
ATCTGCCCAGTTCCAAGAAAGCATAATTCTTCTGCTCGGCCAAGGTCAAC
TCCTGGGCTTGTTCTCCCCGTCTCCTTCCGCCGCCGACGTGGCAGTACCT
CTGGCGATAGCAAGTCTCCTGTGTCGCATTTGCTCAATCCCTACCGCCCT
CAGCTTTACAGATGCTCCCCAGCACCCACTTCTTTGGGCCCCTGCAATGT
TCCGGGGCCCATCCCTCTTCACCGTGTCCTTGCTGTTGTCTTTGTTCCTC
GTCATTTACCTCCTCCTCCTTCTCCGAATCCGAGTCCGAATCCGCGTCTG
GGTGAAGCACCTTGCCCCTTGTGCGTGAATCCTGGGAGTGGCGCGGGATC
GGTCGACCATTTCTTCTTCGCTGCTGGAGCTGGAGGCCTCCTCACCAGTC
CCCCAGGATGGAGAAGAAGGGCCTGCATACGCTGCTGCTATTGTCACGGC
TTAACCACTGGTAGTCCTAAGTAGATAGGTAGATGAGGTGCAGTAGAACA
AAATGGTGGTGTGTTGGCTTTCATTTAGTGAAGAAAAAAGGCACTCGTAT
GGTTTGAATGGCTCG
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protein sequence of jgi.p|Nanoce1779_2|179368

>mRNA_7965-protein ID=mRNA_7965-protein|Name=jgi.p|Nanoce1779_2|179368|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MCRYFMTMRSSIVCSCMHPEGHSILREDALRICMERTRCQPRRVRVLVPP
HPPSPPLRGHVVVENGDLQPSAQFQESIILLLGQGQLLGLFSPSPSAADV
AVPLAIASLLCRICSIPTALSFTDAPQHPLLWAPAMFRGPSLFTVSLLLS
LFLVIYLLLLLRIRVRIRVWVKHLAPCA*
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mRNA from alignment at scaffold_22:286683..287647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7965 ID=mRNA_7965|Name=jgi.p|Nanoce1779_2|179368|organism=Nannochloropsis oceanica|type=mRNA|length=965bp|location=Sequence derived from alignment at scaffold_22:286683..287647+ (Nannochloropsis oceanica)
CCCTCACCCCTCCGGGAGAGAGTACAGCTTATCGCCGTGGCTCATCCACA
TCTGAAAGCTCTAGGGTAAACCCTTACATAAGACATCGGCCGCCTCCTCG
TGGCCCTGCAAATCAATCTCCTTGCAATTCATCCTCCTCGTTCTCCTCCC
AATCCTTCATCTCCGCCGCCGTTGGGTAAACATGCCCGTCTATGTGCCGG
TACTTCATGACCATGAGGTCATCCATCGTTTGTTCGTGCATGCATCCCGA
AGGTCATTCCATACTGAGAGAGGACGCGCTCCGCATCTGTATGGAGAGAA
CGCGCTGCCAGCCGCGACGAGTAAGGGTACTCGTTCCGCCTCATCCCCCT
AGCCCACCACTCCGGGGCCATGTCGTAGTCGAAAATGGGGACCTTCAGCC
ATCTGCCCAGTTCCAAGAAAGCATAATTCTTCTGCTCGGCCAAGGTCAAC
TCCTGGGCTTGTTCTCCCCGTCTCCTTCCGCCGCCGACGTGGCAGTACCT
CTGGCGATAGCAAGTCTCCTGTGTCGCATTTGCTCAATCCCTACCGCCCT
CAGCTTTACAGATGCTCCCCAGCACCCACTTCTTTGGGCCCCTGCAATGT
TCCGGGGCCCATCCCTCTTCACCGTGTCCTTGCTGTTGTCTTTGTTCCTC
GTCATTTACCTCCTCCTCCTTCTCCGAATCCGAGTCCGAATCCGCGTCTG
GGTGAAGCACCTTGCCCCTTGTGCGTGAATCCTGGGAGTGGCGCGGGATC
GGTCGACCATTTCTTCTTCGCTGCTGGAGCTGGAGGCCTCCTCACCAGTC
CCCCAGGATGGAGAAGAAGGGCCTGCATACGCTGCTGCTATTGTCACGGC
TTAACCACTGGTAGTCCTAAGTAGATAGGTAGATGAGGTGCAGTAGAACA
AAATGGTGGTGTGTTGGCTTTCATTTAGTGAAGAAAAAAGGCACTCGTAT
GGTTTGAATGGCTCG
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Coding sequence (CDS) from alignment at scaffold_22:286683..287647+

>mRNA_7965 ID=mRNA_7965|Name=jgi.p|Nanoce1779_2|179368|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_22:286683..287647+ (Nannochloropsis oceanica)
ATGTGCCGGTACTTCATGACCATGAGGTCATCCATCGTTTGTTCGTGCAT
GCATCCCGAAGGTCATTCCATACTGAGAGAGGACGCGCTCCGCATCTGTA
TGGAGAGAACGCGCTGCCAGCCGCGACGAGTAAGGGTACTCGTTCCGCCT
CATCCCCCTAGCCCACCACTCCGGGGCCATGTCGTAGTCGAAAATGGGGA
CCTTCAGCCATCTGCCCAGTTCCAAGAAAGCATAATTCTTCTGCTCGGCC
AAGGTCAACTCCTGGGCTTGTTCTCCCCGTCTCCTTCCGCCGCCGACGTG
GCAGTACCTCTGGCGATAGCAAGTCTCCTGTGTCGCATTTGCTCAATCCC
TACCGCCCTCAGCTTTACAGATGCTCCCCAGCACCCACTTCTTTGGGCCC
CTGCAATGTTCCGGGGCCCATCCCTCTTCACCGTGTCCTTGCTGTTGTCT
TTGTTCCTCGTCATTTACCTCCTCCTCCTTCTCCGAATCCGAGTCCGAAT
CCGCGTCTGGGTGAAGCACCTTGCCCCTTGTGCGTGA
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Synonyms
Publications