jgi.p|Nanoce1779_2|600699, mRNA_7961 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600699
Unique Name	mRNA_7961
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1853
Alignment location	scaffold_22:274279..279023 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600785
Track	FilteredModels2
ProteinId	600699

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:274279..279023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600699	gene_7961	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600699	mRNA_7961-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7961	CDS_7961	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:274279..279023+
coding sequence from alignment at scaffold_22:274279..279023+

mRNA sequence

>mRNA_7961 ID=mRNA_7961|Name=jgi.p|Nanoce1779_2|600699|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp
CAGCCATAGAGTGGGAGACCAGCCAATGCCGTCGTTTTTCTCAGCCAGGC
GGCGTGACGCCATGGGCTACAGCGGGCCGTGTAGTAGCCCTCGTCGTCCC
TCCTCCACGGCCTTCCTCGTCCTCTTGGTCGCGCTGTGCCTCTCAATGCG
TGTGCTTTTTGCCACCTCCGCCTTCAGGCCAGCAGTCAATACAGAGGGGG
GCAATCAACCGTCTTCCTTCTTGGGAATGTCATGGAGTGGCAAGGGGGAA
GGCACGACGATGCCCTTGACGGAGGAACAAACGTTGCAGCGCGCGGTGGA
GGACCTGGGCGAGCAACTGAAGGAGCTAGAGAGGAGGAGAGAAGCCGTGC
CGATACCAGCTGTGGAGCATGAGCACACGGACCAGGCGGATGTCGTGGCC
CAAAATGAGGCGGAGGAAGCCGTGAGCAAGCTAAGAAGAGCTGGAGATAG
AGCCAAGGAGGAAGAGGAGGAGAAAAGAAAGAAAAAGAAAGCAGATGATG
CGGCAGCCGCTGCTGCGAAGGATCTTGCTGCTGCAGACACAAAGAAGGCT
GCACCAGCCCATGTGACGGTGTCTGATCAATCAAAATCGGAAGAAGGAAA
ACCCAAGTACACAGGCGCCCGACAGCCGATGCAAGACGCATTAGGGCAAG
AGGAAAAATACGACAGTGACACAAGCCCTGTGCCACTGGTGGACCCGACG
ACATTAGCTCGTAACCCCCCACCGTTCCAACATGACGACATGGAGCAGCT
CTGTGCCCATACCGATGATGGAGATGAAGCGGTCCTCGCGCGCGTAGATG
TCTGGCCCGACGCCGAAAGGGGCAAGCCCCGCATCCTTTGCTTCAGCTAC
ACTCTCTCTGAAGCCCACGATACGGCCGTGAAGAGCCTCCGGATGACCTG
GGCGCAGCGCTGCGACGGGTACCTAGCCATGAGCAATTTGACTGACCCTT
CTATCCCCTCCATTGATATCAAGCATAAAGGCCCCGAGGCGTATGACAAC
ATGTGGCAGAAAATCCGGTCTATCTGGTTGTATCTCCACAAGCACCACTT
GCATGACTTCGATTACTTCGTGTCGGGCGGCGATGACCTTTTTGTTGTCG
TCGAAAATTTGAGGAAGTACCTGCTATCAGAAGAGATTCTGACGGCCACC
GCGGGTGAGACTGAGCCTATCTTTCTAGGGCGGCCTCTCCGGGTCCCGGG
CGACAGAATTCCATTTAACTCGGGCGGGGGCTTCGTATTGAACACGGCAG
CCGTGGACGTGCTTGTTAAGGAGTTGCTAGGAAAGGGAAAGAGTAGGAAG
GAGTGTCGGCCGAATCAAGTCGCGTCCTGGGAGGACGTGAATGTGGCTTA
CTGTTTGAATGAGGGGGGGGTTAAAGTCTTCAATGGGACACAGGACGAGA
TGGGAAGGGAGCGCTTCTTGCCCTTGTCCCCAGGCAGTCATCTCCGTTAT
CGGATCCCGCCGATAAGCGATGTTTGGTATGCGACGTACACGGAGGACTG
GGGGCTCAAGTTCGGGCTTGACTGTTGTTCAACAGACGCGATTACGTTCC
ACTACGCAAAGAAGCTATTGATGAAAAGGTACCACGCCATTGTGCATGGC
TTGTGTCCTAATATCCCAAAAAAGGAAGGAAGGAATGAGGGAGGGATCGT
GATAGATAGAAAATAGAGGTGGTTCATGACTTGTGCTCAAGTGCCAGGAG
ATAGTTAGGGAGGAAATGAGGGGAGGATGAAACGACGGCGGGAGGAAAGT
GGCATGCGTGCTTGGTGAGCCTTTTATGCATATCCGTACATACATGTTTA
ATGCAAATCTGAGAGTTACAAAGAAACTGCAAAACAAACATTAAATGTCA
TGA

protein sequence of jgi.p|Nanoce1779_2|600699

>mRNA_7961-protein ID=mRNA_7961-protein|Name=jgi.p|Nanoce1779_2|600699|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MPSFFSARRRDAMGYSGPCSSPRRPSSTAFLVLLVALCLSMRVLFATSAF
RPAVNTEGGNQPSSFLGMSWSGKGEGTTMPLTEEQTLQRAVEDLGEQLKE
LERRREAVPIPAVEHEHTDQADVVAQNEAEEAVSKLRRAGDRAKEEEEEK
RKKKKADDAAAAAAKDLAAADTKKAAPAHVTVSDQSKSEEGKPKYTGARQ
PMQDALGQEEKYDSDTSPVPLVDPTTLARNPPPFQHDDMEQLCAHTDDGD
EAVLARVDVWPDAERGKPRILCFSYTLSEAHDTAVKSLRMTWAQRCDGYL
AMSNLTDPSIPSIDIKHKGPEAYDNMWQKIRSIWLYLHKHHLHDFDYFVS
GGDDLFVVVENLRKYLLSEEILTATAGETEPIFLGRPLRVPGDRIPFNSG
GGFVLNTAAVDVLVKELLGKGKSRKECRPNQVASWEDVNVAYCLNEGGVK
VFNGTQDEMGRERFLPLSPGSHLRYRIPPISDVWYATYTEDWGLKFGLDC
CSTDAITFHYAKKLLMKRYHAIVHGLCPNIPKKEGRNEGGIVIDRK*

mRNA from alignment at scaffold_22:274279..279023+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7961 ID=mRNA_7961|Name=jgi.p|Nanoce1779_2|600699|organism=Nannochloropsis oceanica|type=mRNA|length=4745bp|location=Sequence derived from alignment at scaffold_22:274279..279023+ (Nannochloropsis oceanica)
CAGCCATAGAGTGGGAGGCCAGCCAATGCCGTCGTCCTTCTCAGCCAGGC
GGCGTGACGCCATGGGCTACAGCGGGCCGTGTAGTGGCCTTTGTCGTCCC
TCCTCCACGGCCTTCCTTGTTCTGGTGGCCGGGGGGTGGCTCATGGTGCT
TGTGCTTTTTGCCACCTCCGCCTTCAGGCCAGCAGTCAATACAGAGGGGG
GCAATCAACCGTCTTCCTTCTTGGGAATGTCATGGAGTGGCAAGGGGGAA
GGCACGACGATGCCCTTGACGGAGGAACAAATGTTGCAGCGCGCGGTGGA
GGACCTGGACGAGCGACTGAAGGAGCTAGAGAGGAGGAGAGAAGCCGTGC
CGATACCAGCTGTGGAGCATGAGCACACGGACCAGGCGGATGTCGTGGCC
CAAAATGAGGCGGAGGAAGCCGTGAGCAAGCTAAGAAGAGCTGGAGATAG
AGCCAAGGAGGAAGAGGAGGAGAAAAGAAAGAAAAAGAAAGCAGATGATG
CGGCAGCCGCTGCTGCGAAGGATCTTGCTGCTGCAGACACAAAGAAGGCT
GCACCAGCCCATGTGACGGTGTCTGATCAATCAAAATCGGAAGAAGGAAA
ACCCAAGTACACAGGCGCCCGACAGCCGATGCAAGACGCATTAGGGCAAG
AGGAAAAATACGACAGTGACACAAGCCCTGTGCCACTGGTGGACCCGACG
ACATTAGCTCGTAACCCCCCACCGTTCCAACATATCGACATGGAGCAGCT
CTGTGCCCATACCGATGATGGAGATGAAGCGGTCCTCGCGCGCGTAGATG
TCTGGCCCGACGCCGAAAGGGGCAAGCCCCGCATCCTTTGCTTCAGCTAC
ACTCTCTCTGAAGCCCACGATACGGCCGTGAAGAGCCTCCGGATGACCTG
GGCGCAGCGCTGCGACGGGTACCTAGCCATGAGCAATTTGACTGACCCTT
CTATCCCCTCCATTGATATCAAGCATAAAGGCCCCGAGGCGTATGACAAC
ATGTGGCAGAAAATCCGGTCTATCTGGTTGTATCTCCACAAGCACCACTT
GCATGACTTCGATTACTTCGTGTCGGGCGGCGATGACCTTTTTGTTGTCG
TCGAAAATTTGAGGAAGTACCTGCTATCAGAAGAGATTCTGACGGCCACC
GCGGGTGGGACTGAGCCTATCTTTCTAGGGCGGCCTTTCCGGCCCCCGGG
AGGTGTCATCCCATTTAACTCGGGCGGGGCGGGCTTCGTATTGAACACGG
CAGCCGTGGACGTGCTTGTTAAGGAGTTGCTAGGAAAGGGAAAGAGTAGG
AAGGAGTGTCGGCCGAACCAAGCCGGGTTTTGGGAGGACGTGAATGTGGC
TTACTGTTTGAATGAGGGGGGGGTTAAAGTCTTCAATGGGACACAGGACG
AGATGGGAAGGGAGCGCTTCTTGCCCTTCACCCCGGGCAATCATCTCCGT
TATCGGATCCCGCCGGTGACCCCGGACTGGTATGTCAAGTACACGGAGGA
CTGGGGGCTCAAGTTCGGGCTTGACTGTTGTTCAACAGACTCGATTACGT
TCCACTACGCAAAGAAGCTATTGATGAAAAGGTACCACGCCATTGTGCAT
GGCTTGTGTCCTAATATCCCAAAAAAGGAAGGAAGGAATGAGGGAGGGAT
CGTGATAGATAGAAAATAGAGGTGGTTCATGACTTGTGCTCAAGTGCCAG
GAGATAGTTAGGGAGGAAATGAGGGGAGGATGAAACGACGGCGGGAGGAA
AGTGGCATGCGTGCTTGGTGAGCCTTTTATGCATATCCGTACATACATGT
TTAATGCAAATCTGAGAGTTACAAAGAAACTGCAAAACAAACATTAAATA
TCATGATTATATCTGCGTATGCATGGGCGTGTCAATTGCCTTATGTGTCT
CTGTGGGATGACTTCCAGCCTGCTCATCTTTCTCCGTCACTTTCTTCTTC
TTGCTCTTCTTATTTCTCCATCTTGTGCTTGCCTGTCTATGGAACGTAAT
GCATGATGATGTACCTTCCACACTCCGCCATCTCCTACCACTCCATTAAA
CCTACCCCAAACCACGCGTATATTGTACTTTCACGCGCCGCTTTCTCCTT
TTCTAACTTGCTCTATTCTCGTGATAATTCTCCCACTTACTAAGGTCGCA
CGCGGATGCCGCTTTCCTGGGGCCCTTCCCTTATCTTTCACAGTAGTGCC
TAAGGTGACCTACCCCTTAGCGTGAGCATGACCTATTCATCGCGCGACGG
AGGCATCACCCTTCCGCTCAATTTCCCCGACGAAGAGACTACAGTGCTGT
CGGACCGCATGCGAGCCACCTTGCAAGCAGATGATGCCTCTCTGCCCCAA
GCTACCCGCACGGTCTACTCCCTCCCCCAAACCACCACTCCCCCGCGGCT
TTCTCCCGCAATGTCTCCGTTCCCGCTCAGGCATGTACGAAGAAGCTTTG
ATGGTCGCGAGGACCATCTGGCTTTTCAACGGGAGGCTTGTTGGCGGTCA
CGCTTTGTTGCTTTTACGAAGTTCATCGTTTCTTTTTGTTTCGTTTTAAG
GTGGTGCCGGGGGCCGATGTCTGTTTCCGATGAATCTCTGTTGGCCTGAA
TACAACCACTTTATTTGGGAGCGTTGAGAAAGTCAACAATATAACCAACC
TCTAAAGATCCACCCCCAACTACTCACAATCTTGGCGTGGATTGAGTCTG
AGAACCACAGAATCAGATATCAAAACACCTGATAGCTTCTTTTGAAAATG
GGCTCCTCGCTCGCTCAGGCCCATAGTTGAGTACAGTGAAACGGACAGGA
GCGACCGTTGGTTTGATCAACCTCTTAACTCAATTATGACTGCTTCCACA
AGAGCCAGCCGGCCATGCACAGGAAAAGCCCAGATACTTAATTCGCAACA
AAGTAGGAGACCAGCCAATGCCGTCGTTTTTCTCAGCCAGGCGGCGTGAC
GCCATGGGCTACAGCGGGCCGTGTAGTAGCCCTCGTCGTCCCTCCTCCAC
GGCCTTCCTCGTCCTCTTGGTCGCGCTGTGCCTCTCAATGCGTGTGCTTT
TTGCCACCTCCGCCTTCAGGCCAGCAGTCAATACAGAGGGGGGCAATCAA
CCGTCTTCCTTCTTGGGAATGTCATGGAGTGGCAAGGGGGAAGGCACGAC
GATGCCCTTGACGGAGGAACAAACGTTGCAGCGCGCGGTGGAGGACCTGG
GCGAGCAACTGAAGGAGCTAGAGAGGAGGAGAGAAGCCGTGCCGATACCA
GCTGTGGAGCATGAGCACACGGACCAGGCGGATGTCGTGGCCCAAAATGA
GGCGGAGGAAGCCGTGAGCAAGCTAAGAAGAGCTGGAGATAGAGCCAAGG
AGGAAGAGGAGGAGAAAAGAAAGAAAAAGAAAGCAGATGATGCGGCAGCC
GCTGCTGCGAAGGATCTTGCTGCTGCAGACACAAAGAAGGCTGCACCAGC
CCATGTGACGGTGTCTGATCAATCAAAATCGGAAGAAGGAAAACCCAAGT
ACACAGGCGCCCGACAGCCGATGCAAGACGCATTAGGGCAAGAGGAAAAA
TACGACAGTGACACAAGCCCTGTGCCACTGGTGGACCCGACGACATTAGC
TCGTAACCCCCCACCGTTCCAACATGACGACATGGAGCAGCTCTGTGCCC
ATACCGATGATGGAGATGAAGCGGTCCTCGCGCGCGTAGATGTCTGGCCC
GACGCCGAAAGGGGCAAGCCCCGCATCCTTTGCTTCAGCTACACTCTCTC
TGAAGCCCACGATACGGCCGTGAAGAGCCTCCGGATGACCTGGGCGCAGC
GCTGCGACGGGTACCTAGCCATGAGCAATTTGACTGACCCTTCTATCCCC
TCCATTGATATCAAGCATAAAGGCCCCGAGGCGTATGACAACATGTGGCA
GAAAATCCGGTCTATCTGGTTGTATCTCCACAAGCACCACTTGCATGACT
TCGATTACTTCGTGTCGGGCGGCGATGACCTTTTTGTTGTCGTCGAAAAT
TTGAGGAAGTACCTGCTATCAGAAGAGATTCTGACGGCCACCGCGGGTGA
GACTGAGCCTATCTTTCTAGGGCGGCCTCTCCGGGTCCCGGGCGACAGAA
TTCCATTTAACTCGGGCGGGGGCTTCGTATTGAACACGGCAGCCGTGGAC
GTGCTTGTTAAGGAGTTGCTAGGAAAGGGAAAGAGTAGGAAGGAGTGTCG
GCCGAATCAAGTCGCGTCCTGGGAGGACGTGAATGTGGCTTACTGTTTGA
ATGAGGGGGGGGTTAAAGTCTTCAATGGGACACAGGACGAGATGGGAAGG
GAGCGCTTCTTGCCCTTGTCCCCAGGCAGTCATCTCCGTTATCGGATCCC
GCCGATAAGCGATGTTTGGTATGCGACGTACACGGAGGACTGGGGGCTCA
AGTTCGGGCTTGACTGTTGTTCAACAGACGCGATTACGTTCCACTACGCA
AAGAAGCTATTGATGAAAAGGTACCACGCCATTGTGCATGGCTTGTGTCC
TAATATCCCAAAAAAGGAAGGAAGGAATGAGGGAGGGATCGTGATAGATA
GAAAATAGAGGTGGTTCATGACTTGTGCTCAAGTGCCAGGAGATAGTTAG
GGAGGAAATGAGGGGAGGATGAAACGACGGCGGGAGGAAAGTGGCATGCG
TGCTTGGTGAGCCTTTTATGCATATCCGTACATACATGTTTAATGCAAAT
CTGAGAGTTACAAAGAAACTGCAAAACAAACATTAAATGTCATGA

Coding sequence (CDS) from alignment at scaffold_22:274279..279023+

>mRNA_7961 ID=mRNA_7961|Name=jgi.p|Nanoce1779_2|600699|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at scaffold_22:274279..279023+ (Nannochloropsis oceanica)
ATGCCGTCGTTTTTCTCAGCCAGGCGGCGTGACGCCATGGGCTACAGCGG
GCCGTGTAGTAGCCCTCGTCGTCCCTCCTCCACGGCCTTCCTCGTCCTCT
TGGTCGCGCTGTGCCTCTCAATGCGTGTGCTTTTTGCCACCTCCGCCTTC
AGGCCAGCAGTCAATACAGAGGGGGGCAATCAACCGTCTTCCTTCTTGGG
AATGTCATGGAGTGGCAAGGGGGAAGGCACGACGATGCCCTTGACGGAGG
AACAAACGTTGCAGCGCGCGGTGGAGGACCTGGGCGAGCAACTGAAGGAG
CTAGAGAGGAGGAGAGAAGCCGTGCCGATACCAGCTGTGGAGCATGAGCA
CACGGACCAGGCGGATGTCGTGGCCCAAAATGAGGCGGAGGAAGCCGTGA
GCAAGCTAAGAAGAGCTGGAGATAGAGCCAAGGAGGAAGAGGAGGAGAAA
AGAAAGAAAAAGAAAGCAGATGATGCGGCAGCCGCTGCTGCGAAGGATCT
TGCTGCTGCAGACACAAAGAAGGCTGCACCAGCCCATGTGACGGTGTCTG
ATCAATCAAAATCGGAAGAAGGAAAACCCAAGTACACAGGCGCCCGACAG
CCGATGCAAGACGCATTAGGGCAAGAGGAAAAATACGACAGTGACACAAG
CCCTGTGCCACTGGTGGACCCGACGACATTAGCTCGTAACCCCCCACCGT
TCCAACATGACGACATGGAGCAGCTCTGTGCCCATACCGATGATGGAGAT
GAAGCGGTCCTCGCGCGCGTAGATGTCTGGCCCGACGCCGAAAGGGGCAA
GCCCCGCATCCTTTGCTTCAGCTACACTCTCTCTGAAGCCCACGATACGG
CCGTGAAGAGCCTCCGGATGACCTGGGCGCAGCGCTGCGACGGGTACCTA
GCCATGAGCAATTTGACTGACCCTTCTATCCCCTCCATTGATATCAAGCA
TAAAGGCCCCGAGGCGTATGACAACATGTGGCAGAAAATCCGGTCTATCT
GGTTGTATCTCCACAAGCACCACTTGCATGACTTCGATTACTTCGTGTCG
GGCGGCGATGACCTTTTTGTTGTCGTCGAAAATTTGAGGAAGTACCTGCT
ATCAGAAGAGATTCTGACGGCCACCGCGGGTGAGACTGAGCCTATCTTTC
TAGGGCGGCCTCTCCGGGTCCCGGGCGACAGAATTCCATTTAACTCGGGC
GGGGGCTTCGTATTGAACACGGCAGCCGTGGACGTGCTTGTTAAGGAGTT
GCTAGGAAAGGGAAAGAGTAGGAAGGAGTGTCGGCCGAATCAAGTCGCGT
CCTGGGAGGACGTGAATGTGGCTTACTGTTTGAATGAGGGGGGGGTTAAA
GTCTTCAATGGGACACAGGACGAGATGGGAAGGGAGCGCTTCTTGCCCTT
GTCCCCAGGCAGTCATCTCCGTTATCGGATCCCGCCGATAAGCGATGTTT
GGTATGCGACGTACACGGAGGACTGGGGGCTCAAGTTCGGGCTTGACTGT
TGTTCAACAGACGCGATTACGTTCCACTACGCAAAGAAGCTATTGATGAA
AAGGTACCACGCCATTGTGCATGGCTTGTGTCCTAATATCCCAAAAAAGG
AAGGAAGGAATGAGGGAGGGATCGTGATAGATAGAAAATAG

Synonyms

Publications