jgi.p|Nanoce1779_2|559199, mRNA_7960 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559199
Unique Name	mRNA_7960
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1856
Alignment location	scaffold_22:274279..276134 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	559285
Track	FilteredModels2
ProteinId	559199

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:274279..276134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559199	gene_7960	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559199	mRNA_7960-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7960	CDS_7960	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:274279..276134+
coding sequence from alignment at scaffold_22:274279..276134+

mRNA sequence

>mRNA_7960 ID=mRNA_7960|Name=jgi.p|Nanoce1779_2|559199|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp
CAGCCATAGAGTGGGAGGCCAGCCAATGCCGTCGTCCTTCTCAGCCAGGC
GGCGTGACGCCATGGGCTACAGCGGGCCGTGTAGTGGCCTTTGTCGTCCC
TCCTCCACGGCCTTCCTTGTTCTGGTGGCCGGGGGGTGGCTCATGGTGCT
TGTGCTTTTTGCCACCTCCGCCTTCAGGCCAGCAGTCAATACAGAGGGGG
GCAATCAACCGTCTTCCTTCTTGGGAATGTCATGGAGTGGCAAGGGGGAA
GGCACGACGATGCCCTTGACGGAGGAACAAATGTTGCAGCGCGCGGTGGA
GGACCTGGACGAGCGACTGAAGGAGCTAGAGAGGAGGAGAGAAGCCGTGC
CGATACCAGCTGTGGAGCATGAGCACACGGACCAGGCGGATGTCGTGGCC
CAAAATGAGGCGGAGGAAGCCGTGAGCAAGCTAAGAAGAGCTGGAGATAG
AGCCAAGGAGGAAGAGGAGGAGAAAAGAAAGAAAAAGAAAGCAGATGATG
CGGCAGCCGCTGCTGCGAAGGATCTTGCTGCTGCAGACACAAAGAAGGCT
GCACCAGCCCATGTGACGGTGTCTGATCAATCAAAATCGGAAGAAGGAAA
ACCCAAGTACACAGGCGCCCGACAGCCGATGCAAGACGCATTAGGGCAAG
AGGAAAAATACGACAGTGACACAAGCCCTGTGCCACTGGTGGACCCGACG
ACATTAGCTCGTAACCCCCCACCGTTCCAACATATCGACATGGAGCAGCT
CTGTGCCCATACCGATGATGGAGATGAAGCGGTCCTCGCGCGCGTAGATG
TCTGGCCCGACGCCGAAAGGGGCAAGCCCCGCATCCTTTGCTTCAGCTAC
ACTCTCTCTGAAGCCCACGATACGGCCGTGAAGAGCCTCCGGATGACCTG
GGCGCAGCGCTGCGACGGGTACCTAGCCATGAGCAATTTGACTGACCCTT
CTATCCCCTCCATTGATATCAAGCATAAAGGCCCCGAGGCGTATGACAAC
ATGTGGCAGAAAATCCGGTCTATCTGGTTGTATCTCCACAAGCACCACTT
GCATGACTTCGATTACTTCGTGTCGGGCGGCGATGACCTTTTTGTTGTCG
TCGAAAATTTGAGGAAGTACCTGCTATCAGAAGAGATTCTGACGGCCACC
GCGGGTGGGACTGAGCCTATCTTTCTAGGGCGGCCTTTCCGGCCCCCGGG
AGGTGTCATCCCATTTAACTCGGGCGGGGCGGGCTTCGTATTGAACACGG
CAGCCGTGGACGTGCTTGTTAAGGAGTTGCTAGGAAAGGGAAAGAGTAGG
AAGGAGTGTCGGCCGAACCAAGCCGGGTTTTGGGAGGACGTGAATGTGGC
TTACTGTTTGAATGAGGGGGGGGTTAAAGTCTTCAATGGGACACAGGACG
AGATGGGAAGGGAGCGCTTCTTGCCCTTCACCCCGGGCAATCATCTCCGT
TATCGGATCCCGCCGGTGACCCCGGACTGGTATGTCAAGTACACGGAGGA
CTGGGGGCTCAAGTTCGGGCTTGACTGTTGTTCAACAGACTCGATTACGT
TCCACTACGCAAAGAAGCTATTGATGAAAAGGTACCACGCCATTGTGCAT
GGCTTGTGTCCTAATATCCCAAAAAAGGAAGGAAGGAATGAGGGAGGGAT
CGTGATAGATAGAAAATAGAGGTGGTTCATGACTTGTGCTCAAGTGCCAG
GAGATAGTTAGGGAGGAAATGAGGGGAGGATGAAACGACGGCGGGAGGAA
AGTGGCATGCGTGCTTGGTGAGCCTTTTATGCATATCCGTACATACATGT
TTAATGCAAATCTGAGAGTTACAAAGAAACTGCAAAACAAACATTAAATA
TCATGA

protein sequence of jgi.p|Nanoce1779_2|559199

>mRNA_7960-protein ID=mRNA_7960-protein|Name=jgi.p|Nanoce1779_2|559199|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MPSSFSARRRDAMGYSGPCSGLCRPSSTAFLVLVAGGWLMVLVLFATSAF
RPAVNTEGGNQPSSFLGMSWSGKGEGTTMPLTEEQMLQRAVEDLDERLKE
LERRREAVPIPAVEHEHTDQADVVAQNEAEEAVSKLRRAGDRAKEEEEEK
RKKKKADDAAAAAAKDLAAADTKKAAPAHVTVSDQSKSEEGKPKYTGARQ
PMQDALGQEEKYDSDTSPVPLVDPTTLARNPPPFQHIDMEQLCAHTDDGD
EAVLARVDVWPDAERGKPRILCFSYTLSEAHDTAVKSLRMTWAQRCDGYL
AMSNLTDPSIPSIDIKHKGPEAYDNMWQKIRSIWLYLHKHHLHDFDYFVS
GGDDLFVVVENLRKYLLSEEILTATAGGTEPIFLGRPFRPPGGVIPFNSG
GAGFVLNTAAVDVLVKELLGKGKSRKECRPNQAGFWEDVNVAYCLNEGGV
KVFNGTQDEMGRERFLPFTPGNHLRYRIPPVTPDWYVKYTEDWGLKFGLD
CCSTDSITFHYAKKLLMKRYHAIVHGLCPNIPKKEGRNEGGIVIDRK*

mRNA from alignment at scaffold_22:274279..276134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7960 ID=mRNA_7960|Name=jgi.p|Nanoce1779_2|559199|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at scaffold_22:274279..276134+ (Nannochloropsis oceanica)
CAGCCATAGAGTGGGAGGCCAGCCAATGCCGTCGTCCTTCTCAGCCAGGC
GGCGTGACGCCATGGGCTACAGCGGGCCGTGTAGTGGCCTTTGTCGTCCC
TCCTCCACGGCCTTCCTTGTTCTGGTGGCCGGGGGGTGGCTCATGGTGCT
TGTGCTTTTTGCCACCTCCGCCTTCAGGCCAGCAGTCAATACAGAGGGGG
GCAATCAACCGTCTTCCTTCTTGGGAATGTCATGGAGTGGCAAGGGGGAA
GGCACGACGATGCCCTTGACGGAGGAACAAATGTTGCAGCGCGCGGTGGA
GGACCTGGACGAGCGACTGAAGGAGCTAGAGAGGAGGAGAGAAGCCGTGC
CGATACCAGCTGTGGAGCATGAGCACACGGACCAGGCGGATGTCGTGGCC
CAAAATGAGGCGGAGGAAGCCGTGAGCAAGCTAAGAAGAGCTGGAGATAG
AGCCAAGGAGGAAGAGGAGGAGAAAAGAAAGAAAAAGAAAGCAGATGATG
CGGCAGCCGCTGCTGCGAAGGATCTTGCTGCTGCAGACACAAAGAAGGCT
GCACCAGCCCATGTGACGGTGTCTGATCAATCAAAATCGGAAGAAGGAAA
ACCCAAGTACACAGGCGCCCGACAGCCGATGCAAGACGCATTAGGGCAAG
AGGAAAAATACGACAGTGACACAAGCCCTGTGCCACTGGTGGACCCGACG
ACATTAGCTCGTAACCCCCCACCGTTCCAACATATCGACATGGAGCAGCT
CTGTGCCCATACCGATGATGGAGATGAAGCGGTCCTCGCGCGCGTAGATG
TCTGGCCCGACGCCGAAAGGGGCAAGCCCCGCATCCTTTGCTTCAGCTAC
ACTCTCTCTGAAGCCCACGATACGGCCGTGAAGAGCCTCCGGATGACCTG
GGCGCAGCGCTGCGACGGGTACCTAGCCATGAGCAATTTGACTGACCCTT
CTATCCCCTCCATTGATATCAAGCATAAAGGCCCCGAGGCGTATGACAAC
ATGTGGCAGAAAATCCGGTCTATCTGGTTGTATCTCCACAAGCACCACTT
GCATGACTTCGATTACTTCGTGTCGGGCGGCGATGACCTTTTTGTTGTCG
TCGAAAATTTGAGGAAGTACCTGCTATCAGAAGAGATTCTGACGGCCACC
GCGGGTGGGACTGAGCCTATCTTTCTAGGGCGGCCTTTCCGGCCCCCGGG
AGGTGTCATCCCATTTAACTCGGGCGGGGCGGGCTTCGTATTGAACACGG
CAGCCGTGGACGTGCTTGTTAAGGAGTTGCTAGGAAAGGGAAAGAGTAGG
AAGGAGTGTCGGCCGAACCAAGCCGGGTTTTGGGAGGACGTGAATGTGGC
TTACTGTTTGAATGAGGGGGGGGTTAAAGTCTTCAATGGGACACAGGACG
AGATGGGAAGGGAGCGCTTCTTGCCCTTCACCCCGGGCAATCATCTCCGT
TATCGGATCCCGCCGGTGACCCCGGACTGGTATGTCAAGTACACGGAGGA
CTGGGGGCTCAAGTTCGGGCTTGACTGTTGTTCAACAGACTCGATTACGT
TCCACTACGCAAAGAAGCTATTGATGAAAAGGTACCACGCCATTGTGCAT
GGCTTGTGTCCTAATATCCCAAAAAAGGAAGGAAGGAATGAGGGAGGGAT
CGTGATAGATAGAAAATAGAGGTGGTTCATGACTTGTGCTCAAGTGCCAG
GAGATAGTTAGGGAGGAAATGAGGGGAGGATGAAACGACGGCGGGAGGAA
AGTGGCATGCGTGCTTGGTGAGCCTTTTATGCATATCCGTACATACATGT
TTAATGCAAATCTGAGAGTTACAAAGAAACTGCAAAACAAACATTAAATA
TCATGA

Coding sequence (CDS) from alignment at scaffold_22:274279..276134+

>mRNA_7960 ID=mRNA_7960|Name=jgi.p|Nanoce1779_2|559199|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at scaffold_22:274279..276134+ (Nannochloropsis oceanica)
ATGCCGTCGTCCTTCTCAGCCAGGCGGCGTGACGCCATGGGCTACAGCGG
GCCGTGTAGTGGCCTTTGTCGTCCCTCCTCCACGGCCTTCCTTGTTCTGG
TGGCCGGGGGGTGGCTCATGGTGCTTGTGCTTTTTGCCACCTCCGCCTTC
AGGCCAGCAGTCAATACAGAGGGGGGCAATCAACCGTCTTCCTTCTTGGG
AATGTCATGGAGTGGCAAGGGGGAAGGCACGACGATGCCCTTGACGGAGG
AACAAATGTTGCAGCGCGCGGTGGAGGACCTGGACGAGCGACTGAAGGAG
CTAGAGAGGAGGAGAGAAGCCGTGCCGATACCAGCTGTGGAGCATGAGCA
CACGGACCAGGCGGATGTCGTGGCCCAAAATGAGGCGGAGGAAGCCGTGA
GCAAGCTAAGAAGAGCTGGAGATAGAGCCAAGGAGGAAGAGGAGGAGAAA
AGAAAGAAAAAGAAAGCAGATGATGCGGCAGCCGCTGCTGCGAAGGATCT
TGCTGCTGCAGACACAAAGAAGGCTGCACCAGCCCATGTGACGGTGTCTG
ATCAATCAAAATCGGAAGAAGGAAAACCCAAGTACACAGGCGCCCGACAG
CCGATGCAAGACGCATTAGGGCAAGAGGAAAAATACGACAGTGACACAAG
CCCTGTGCCACTGGTGGACCCGACGACATTAGCTCGTAACCCCCCACCGT
TCCAACATATCGACATGGAGCAGCTCTGTGCCCATACCGATGATGGAGAT
GAAGCGGTCCTCGCGCGCGTAGATGTCTGGCCCGACGCCGAAAGGGGCAA
GCCCCGCATCCTTTGCTTCAGCTACACTCTCTCTGAAGCCCACGATACGG
CCGTGAAGAGCCTCCGGATGACCTGGGCGCAGCGCTGCGACGGGTACCTA
GCCATGAGCAATTTGACTGACCCTTCTATCCCCTCCATTGATATCAAGCA
TAAAGGCCCCGAGGCGTATGACAACATGTGGCAGAAAATCCGGTCTATCT
GGTTGTATCTCCACAAGCACCACTTGCATGACTTCGATTACTTCGTGTCG
GGCGGCGATGACCTTTTTGTTGTCGTCGAAAATTTGAGGAAGTACCTGCT
ATCAGAAGAGATTCTGACGGCCACCGCGGGTGGGACTGAGCCTATCTTTC
TAGGGCGGCCTTTCCGGCCCCCGGGAGGTGTCATCCCATTTAACTCGGGC
GGGGCGGGCTTCGTATTGAACACGGCAGCCGTGGACGTGCTTGTTAAGGA
GTTGCTAGGAAAGGGAAAGAGTAGGAAGGAGTGTCGGCCGAACCAAGCCG
GGTTTTGGGAGGACGTGAATGTGGCTTACTGTTTGAATGAGGGGGGGGTT
AAAGTCTTCAATGGGACACAGGACGAGATGGGAAGGGAGCGCTTCTTGCC
CTTCACCCCGGGCAATCATCTCCGTTATCGGATCCCGCCGGTGACCCCGG
ACTGGTATGTCAAGTACACGGAGGACTGGGGGCTCAAGTTCGGGCTTGAC
TGTTGTTCAACAGACTCGATTACGTTCCACTACGCAAAGAAGCTATTGAT
GAAAAGGTACCACGCCATTGTGCATGGCTTGTGTCCTAATATCCCAAAAA
AGGAAGGAAGGAATGAGGGAGGGATCGTGATAGATAGAAAATAG

Synonyms

Publications