jgi.p|Nanoce1779_2|574172, mRNA_796 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574172
Unique Name	mRNA_796
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1699
Alignment location	scaffold_2:454432..456492 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574258
Track	FilteredModels2
ProteinId	574172

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:454432..456492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574172	gene_796	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574172	mRNA_796-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_796	CDS_796	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:454432..456492+
coding sequence from alignment at scaffold_2:454432..456492+

mRNA sequence

>mRNA_796 ID=mRNA_796|Name=jgi.p|Nanoce1779_2|574172|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
TGTGGGGGGAAAATGCAAGTTCTGAACGCGCCGGATGCAGGATAGGGGCG
TGGAAGAAAAAGAGCTTGGATTGATGATGCGAGCGCTTCGTTTGACCTCG
GGATGCAAGCCACACACGCGATTATATCTACGTGCACACGCACAGGAGCA
TCTCACGTAGAAAGTGGACGGGGAGTTAGCTGCTGCAAACCCGGCGCTGC
TTTTTGTCTCTTCCACCTAGCGTCTACACCCCAGTCACCACAAGGAGGAC
TCTGTACCCCACGCTCCATTTAGCTAAGCACCGTCAACACCTGCACGCGA
CCGAAATCGAGCAACCGTACGAGCGTGTTTAAGGTGACGGCATGCGCAAG
ACGTCCAGTCATGGCGACCGAAGGCGGAGGTCTGGTCAAGCGGACGCCAC
AGCAAGTTCAGGCAGCAAATCTCATGATCTTACAGAGGCGGGACGATGCC
GTCTCCGAGATTCTAGCCACGGCGACCTATGTGGTGATTTACGTATTTGA
GCCCGTCACCAAGCAATGGGAGCGCAAGGAGATTGAAGGTTCTCTCTTTG
TCGTCAAACGCAGCTACGGCGTGCGTTTCCGCCTTGTTGTTCTAAACCGG
ATCAACCCTAAAGACCTCGAAGAAGACCTCACTGGCAGCTTCACCTTCGA
AGATATGTCCCCATACCTGCTATATCGCACGAAGGGCCTTTCTATCAAAG
GTAACACCGAGACGCTGGCCATATGGTTTCACAACGAGAAGGATAGAGGG
CACATTGCCGGATGCTTGCGGAAAGTCCTCCGACTCGAGTCCGCGGCTAA
CCAGCCTCAGGGGGAGCAGCAGCCAGCACAACAGCGAGAGCTTTTGCTCA
AGTCCGCGGCGTTGCCTCCGGCACCGACAGTGGAGGAGCAGGATCGAATG
GATGACAGTGTGGTGAGAAATACCAGCACCAGTACAAGCATGAGCACCAG
CACCAGCATCAGCGTTGGAGGGAGGACGGCGACGACGATGAAGAAGCCTA
TTAGTATCGAGGAGATGCTCGTGAAAGCAGCCAACATCGGTGGCGACGCT
AGCAGCAGCAGTAAAAGTAACAGCAGTAGCAGCAGTAGCAGCAACAGCAG
CGGAGCGGGAGATGTCTCTACGACTGCAGGTGCCGCGAAACGACCGGCGG
CTACCTCCCCTCCTACAGTGATGGACATGCTCCTCAGATCAAGAGCAGGC
ACAGGGGTTACCAAAACTACAACAGCAGCGACGATGGATGGGGGACGATC
GATGCGTAGTGGGAGCATGAGTACCAGCGCGAGTGGAAGTTCTGCATTGC
TGAACCCGTTGGAAATGGTAAGACCGAGCAGTAGCAGTAGCACCAGCAAT
GGAAGGGGAGCGACGGCGGCTGCCGGAGCTTTGAACAAGCAACAGCTTAA
GGAGGCTTTGTTGGCGTTAATTGAAGACGATGCATTCCTTGAGACGTTGC
ATCATGCGTATCAGAAGCAAAGGTCCAAGTAGAGCATGTGGGGAGACCGA
AGGGTATTTGCTTGTTTGGATGAGGGTACGGAAGATATCACACCCACCAA
TCAAATAAAAGAAATCAACGGACACATAAACATAGTCATTGTTTTAAACT
TACCTTTCCTACTGGCGATTAGCTGCTTTCCCTCTATGCGCTGACGAAAT
CCCTCCCTATATTTGCAAGGAATCAAGAACGCTACGAGGAGGAATGAAG

protein sequence of jgi.p|Nanoce1779_2|574172

>mRNA_796-protein ID=mRNA_796-protein|Name=jgi.p|Nanoce1779_2|574172|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MATEGGGLVKRTPQQVQAANLMILQRRDDAVSEILATATYVVIYVFEPVT
KQWERKEIEGSLFVVKRSYGVRFRLVVLNRINPKDLEEDLTGSFTFEDMS
PYLLYRTKGLSIKGNTETLAIWFHNEKDRGHIAGCLRKVLRLESAANQPQ
GEQQPAQQRELLLKSAALPPAPTVEEQDRMDDSVVRNTSTSTSMSTSTSI
SVGGRTATTMKKPISIEEMLVKAANIGGDASSSSKSNSSSSSSSNSSGAG
DVSTTAGAAKRPAATSPPTVMDMLLRSRAGTGVTKTTTAATMDGGRSMRS
GSMSTSASGSSALLNPLEMVRPSSSSSTSNGRGATAAAGALNKQQLKEAL
LALIEDDAFLETLHHAYQKQRSK*

mRNA from alignment at scaffold_2:454432..456492+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_796 ID=mRNA_796|Name=jgi.p|Nanoce1779_2|574172|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp|location=Sequence derived from alignment at scaffold_2:454432..456492+ (Nannochloropsis oceanica)
TGTGGGGGGAAAATGCAAGTTCTGAACGCGCCGGATGCAGGATAGGGGCG
TGGAAGAAAAAGAGCTTGGATTGATGATGCGAGCGCTTCGTTTGACCTCG
GGATGCAAGCCACACACGCGATTATATCTACGTGCACACGCACAGGAGCA
TCTCACGTAGAAAGTGGACGGGGAGTTAGCTGCTGCAAACCCGGCGCTGC
TTTTTGTCTCTTCCACCTAGCGTCTACACCCCAGTCACCACAAGGAGGAC
TCTGTACCCCACGCTCCATTTAGCTAAGCACCGTCAACACCTGCACGCGA
CCGAAATCGAGCAACCGTACGAGCGTGTTTAAGGTGACGGCATGCGCAAG
GCAAGCGGCATTATTCCGTTTATCGCATCAGTCATCTCTGTCACACCAAT
CCCACACATCCCTTCACCCCACCCCCTCCCCACACAGACGTCCAGTCATG
GCGACCGAAGGCGGAGGTCTGGTCAAGCGGACGCCACAGCAAGTTCAGGC
AGCAAATCTCATGATCTTACAGAGGCGGGACGATGCCGTCTCCGAGATTC
TAGCCACGGCGACCTATGTGGTGATTTACGTATTTGAGCCCGTCACCAAG
CAATGGGAGCGCAAGGAGGTAAGCTGTTTGCTTTTGGCAAGGCAGGAAAT
TCAAGTGGGGAGAACAACATAGGGGAGAACAACATAATGTCACACTTGAA
ATATACTGCTGATGGTTTGGTATGTCGTGGGCCAGTTTTAACGTTGCGTG
TGAGGCTTGTGTGCGTGTACTCATTTATCCGCTTGTGTGTACCTCATCGA
TCCGCCATCCGCCACATGTCCTCGGACTCTTCTGTCTTATCACCCCTCTC
ACGCATTTTTTCCCTACGTTACTCCCTCCCATAAATTTTACAGATTGAAG
GTTCTCTCTTTGTCGTCAAACGCAGCTACGGCGTGCGTTTCCGCCTTGTT
GTTCTAAACCGGATCAACCCTAAAGACCTCGAAGAAGACCTCACTGGCAG
CTTCACCTTCGAAGATATGTCCCCATACCTGCTATATCGCACGAAGGGCC
TTTCTATCAAAGGTAACACCGAGACGCTGGCCATATGGTTTCACAACGAG
AAGGATAGAGGGCACATTGCCGGATGCTTGCGGAAAGTCCTCCGACTCGA
GTCCGCGGCTAACCAGCCTCAGGGGGAGCAGCAGCCAGCACAACAGCGAG
AGCTTTTGCTCAAGTCCGCGGCGTTGCCTCCGGCACCGACAGTGGAGGAG
CAGGATCGAATGGATGACAGTGTGGTGAGAAATACCAGCACCAGTACAAG
CATGAGCACCAGCACCAGCATCAGCGTTGGAGGGAGGACGGCGACGACGA
TGAAGAAGCCTATTAGTATCGAGGAGATGCTCGTGAAAGCAGCCAACATC
GGTGGCGACGCTAGCAGCAGCAGTAAAAGTAACAGCAGTAGCAGCAGTAG
CAGCAACAGCAGCGGAGCGGGAGATGTCTCTACGACTGCAGGTGCCGCGA
AACGACCGGCGGCTACCTCCCCTCCTACAGTGATGGACATGCTCCTCAGA
TCAAGAGCAGGCACAGGGGTTACCAAAACTACAACAGCAGCGACGATGGA
TGGGGGACGATCGATGCGTAGTGGGAGCATGAGTACCAGCGCGAGTGGAA
GTTCTGCATTGCTGAACCCGTTGGAAATGGTAAGACCGAGCAGTAGCAGT
AGCACCAGCAATGGAAGGGGAGCGACGGCGGCTGCCGGAGCTTTGAACAA
GCAACAGCTTAAGGAGGCTTTGTTGGCGTTAATTGAAGACGATGCATTCC
TTGAGACGTTGCATCATGCGTATCAGAAGCAAAGGTCCAAGTAGAGCATG
TGGGGAGACCGAAGGGTATTTGCTTGTTTGGATGAGGGTACGGAAGATAT
CACACCCACCAATCAAATAAAAGAAATCAACGGACACATAAACATAGTCA
TTGTTTTAAACTTACCTTTCCTACTGGCGATTAGCTGCTTTCCCTCTATG
CGCTGACGAAATCCCTCCCTATATTTGCAAGGAATCAAGAACGCTACGAG
GAGGAATGAAG

Coding sequence (CDS) from alignment at scaffold_2:454432..456492+

>mRNA_796 ID=mRNA_796|Name=jgi.p|Nanoce1779_2|574172|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_2:454432..456492+ (Nannochloropsis oceanica)
ATGGCGACCGAAGGCGGAGGTCTGGTCAAGCGGACGCCACAGCAAGTTCA
GGCAGCAAATCTCATGATCTTACAGAGGCGGGACGATGCCGTCTCCGAGA
TTCTAGCCACGGCGACCTATGTGGTGATTTACGTATTTGAGCCCGTCACC
AAGCAATGGGAGCGCAAGGAGATTGAAGGTTCTCTCTTTGTCGTCAAACG
CAGCTACGGCGTGCGTTTCCGCCTTGTTGTTCTAAACCGGATCAACCCTA
AAGACCTCGAAGAAGACCTCACTGGCAGCTTCACCTTCGAAGATATGTCC
CCATACCTGCTATATCGCACGAAGGGCCTTTCTATCAAAGGTAACACCGA
GACGCTGGCCATATGGTTTCACAACGAGAAGGATAGAGGGCACATTGCCG
GATGCTTGCGGAAAGTCCTCCGACTCGAGTCCGCGGCTAACCAGCCTCAG
GGGGAGCAGCAGCCAGCACAACAGCGAGAGCTTTTGCTCAAGTCCGCGGC
GTTGCCTCCGGCACCGACAGTGGAGGAGCAGGATCGAATGGATGACAGTG
TGGTGAGAAATACCAGCACCAGTACAAGCATGAGCACCAGCACCAGCATC
AGCGTTGGAGGGAGGACGGCGACGACGATGAAGAAGCCTATTAGTATCGA
GGAGATGCTCGTGAAAGCAGCCAACATCGGTGGCGACGCTAGCAGCAGCA
GTAAAAGTAACAGCAGTAGCAGCAGTAGCAGCAACAGCAGCGGAGCGGGA
GATGTCTCTACGACTGCAGGTGCCGCGAAACGACCGGCGGCTACCTCCCC
TCCTACAGTGATGGACATGCTCCTCAGATCAAGAGCAGGCACAGGGGTTA
CCAAAACTACAACAGCAGCGACGATGGATGGGGGACGATCGATGCGTAGT
GGGAGCATGAGTACCAGCGCGAGTGGAAGTTCTGCATTGCTGAACCCGTT
GGAAATGGTAAGACCGAGCAGTAGCAGTAGCACCAGCAATGGAAGGGGAG
CGACGGCGGCTGCCGGAGCTTTGAACAAGCAACAGCTTAAGGAGGCTTTG
TTGGCGTTAATTGAAGACGATGCATTCCTTGAGACGTTGCATCATGCGTA
TCAGAAGCAAAGGTCCAAGTAGATGGCGACCGAAGGCGGAGGTCTGGTCA
AGCGGACGCCACAGCAAGTTCAGGCAGCAAATCTCATGATCTTACAGAGG
CGGGACGATGCCGTCTCCGAGATTCTAGCCACGGCGACCTATGTGGTGAT
TTACGTATTTGAGCCCGTCACCAAGCAATGGGAGCGCAAGGAGATTGAAG
GTTCTCTCTTTGTCGTCAAACGCAGCTACGGCGTGCGTTTCCGCCTTGTT
GTTCTAAACCGGATCAACCCTAAAGACCTCGAAGAAGACCTCACTGGCAG
CTTCACCTTCGAAGATATGTCCCCATACCTGCTATATCGCACGAAGGGCC
TTTCTATCAAAGGTAACACCGAGACGCTGGCCATATGGTTTCACAACGAG
AAGGATAGAGGGCACATTGCCGGATGCTTGCGGAAAGTCCTCCGACTCGA
GTCCGCGGCTAACCAGCCTCAGGGGGAGCAGCAGCCAGCACAACAGCGAG
AGCTTTTGCTCAAGTCCGCGGCGTTGCCTCCGGCACCGACAGTGGAGGAG
CAGGATCGAATGGATGACAGTGTGGTGAGAAATACCAGCACCAGTACAAG
CATGAGCACCAGCACCAGCATCAGCGTTGGAGGGAGGACGGCGACGACGA
TGAAGAAGCCTATTAGTATCGAGGAGATGCTCGTGAAAGCAGCCAACATC
GGTGGCGACGCTAGCAGCAGCAGTAAAAGTAACAGCAGTAGCAGCAGTAG
CAGCAACAGCAGCGGAGCGGGAGATGTCTCTACGACTGCAGGTGCCGCGA
AACGACCGGCGGCTACCTCCCCTCCTACAGTGATGGACATGCTCCTCAGA
TCAAGAGCAGGCACAGGGGTTACCAAAACTACAACAGCAGCGACGATGGA
TGGGGGACGATCGATGCGTAGTGGGAGCATGAGTACCAGCGCGAGTGGAA
GTTCTGCATTGCTGAACCCGTTGGAAATGGTAAGACCGAGCAGTAGCAGT
AGCACCAGCAATGGAAGGGGAGCGACGGCGGCTGCCGGAGCTTTGAACAA
GCAACAGCTTAAGGAGGCTTTGTTGGCGTTAATTGAAGACGATGCATTCC
TTGAGACGTTGCATCATGCGTATCAGAAGCAAAGGTCCAAGTAG

Synonyms

Publications