jgi.p|Nanoce1779_2|600694, mRNA_7959 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600694
Unique NamemRNA_7959
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1217
Alignment locationscaffold_22:272348..273564 +

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Properties
Property NameValue
TranscriptId600780
TrackFilteredModels2
ProteinId600694
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:272348..273564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600694gene_7959Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600694mRNA_7959-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7959CDS_7959Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7959 ID=mRNA_7959|Name=jgi.p|Nanoce1779_2|600694|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp
CCCCCCTCCTCAATCTCACCGACGAAGAGGCGACAATTCTGGTGGACCGC
ATGCGAGTCGCCATGCAAGCCGATGATGCCTCTCTGCCCCAAGCTACCCG
CGTGGGCTCTGCATGCCCTCCTCCACCGCCTCTCCCCCGCGGCTTTCTTC
TGCAATGTCTCCGTTCCCGCTCAGGCGTGTATGACGAAGCTTTGATGGTC
GCGCGGAACTTCCTGGCTTTTCGGCGGGGGGCCGGTTGGCCCTTACGGCT
GAAGGCCAAGGACGTGATGGGAGGTCCCCTAGAGTCAGGAGCTCATTGGA
TCTTGCCGGGCAGGGATAAGGAAGGCAGGGGGATCTTCGTTTTCAATGTG
GGGAAAATTGACACTCGGAAGGCGAGCTTGGAGAAATACCAGCAGGTGGG
CGCCTATTTGGTTGAGAGGTTCACAAGGGATGAGGAAATGCAGCGGACGG
GATTGGTCATGATTGTTAATTTGGCCTCGGTCCCGTTTGGGTTATGCCGA
GCCTTGGTTTCGTTGAAAGATGCCAAGAGGGGGATCAGAATGTGGCAGGA
CGCGTTTCCGTGTAAGTTGAAGCGGATTTACGTGGTGGGGGGCTCCTTGT
GGTTGCTACGGGCAATGCGACTGGTGGTAGCGATGCTGGGGAAGAAACTG
CAGAATCGAGTGAGGGTGTTGCCGCATTTGGAGGCGTTGCACCGGGATGT
CGACAGGGACAATATTCCGCCTTGTTTGGGTGGAAGCTTGGAAAGGTTTG
AGTGGGGGGAGTGGGTGGCGAAGGTGGCGGCTCATGAAAGAGAGGAAAAG
GATCCAGTATGGACAGACAGGCAGATAGATGTAATAGAGGGGGATTGTTG
TCCACGATTTTGAGTATAAATCAGAAGTTATTTTTCTATCCGGAGGAGAG
GAAACAGAGCGGAAAGGGAAAATGAGAAGAATCTCTTGTATGTCTCGCAT
TAGGATATTAGGATACCAGACGGAAGTCAGGGAGAAGTTCCGTCACAATT
TTGTCAACAATGAAGAGTAAAAATAGCCTGTCTAGAGGGAGGGTAGTGTC
CATGAGAGCCTGGGCAGTGCGCATGCCCGCTTGTCTTCCACTCTTGATTT
GATTTGACTGTATGTTTTCACTTTGGCGATCGCGTGTATTGTGGGTAAAG
AGAACACAAGACAGAAAGACACGCGAAAACTGAAGAAAGAAATACAATTT
CAAGAGAATCGCTGCGA
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protein sequence of jgi.p|Nanoce1779_2|600694

>mRNA_7959-protein ID=mRNA_7959-protein|Name=jgi.p|Nanoce1779_2|600694|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MRVAMQADDASLPQATRVGSACPPPPPLPRGFLLQCLRSRSGVYDEALMV
ARNFLAFRRGAGWPLRLKAKDVMGGPLESGAHWILPGRDKEGRGIFVFNV
GKIDTRKASLEKYQQVGAYLVERFTRDEEMQRTGLVMIVNLASVPFGLCR
ALVSLKDAKRGIRMWQDAFPCKLKRIYVVGGSLWLLRAMRLVVAMLGKKL
QNRVRVLPHLEALHRDVDRDNIPPCLGGSLERFEWGEWVAKVAAHEREEK
DPVWTDRQIDVIEGDCCPRF*
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mRNA from alignment at scaffold_22:272348..273564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7959 ID=mRNA_7959|Name=jgi.p|Nanoce1779_2|600694|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at scaffold_22:272348..273564+ (Nannochloropsis oceanica)
CCCCCCTCCTCAATCTCACCGACGAAGAGGCGACAATTCTGGTGGACCGC
ATGCGAGTCGCCATGCAAGCCGATGATGCCTCTCTGCCCCAAGCTACCCG
CGTGGGCTCTGCATGCCCTCCTCCACCGCCTCTCCCCCGCGGCTTTCTTC
TGCAATGTCTCCGTTCCCGCTCAGGCGTGTATGACGAAGCTTTGATGGTC
GCGCGGAACTTCCTGGCTTTTCGGCGGGGGGCCGGTTGGCCCTTACGGCT
GAAGGCCAAGGACGTGATGGGAGGTCCCCTAGAGTCAGGAGCTCATTGGA
TCTTGCCGGGCAGGGATAAGGAAGGCAGGGGGATCTTCGTTTTCAATGTG
GGGAAAATTGACACTCGGAAGGCGAGCTTGGAGAAATACCAGCAGGTGGG
CGCCTATTTGGTTGAGAGGTTCACAAGGGATGAGGAAATGCAGCGGACGG
GATTGGTCATGATTGTTAATTTGGCCTCGGTCCCGTTTGGGTTATGCCGA
GCCTTGGTTTCGTTGAAAGATGCCAAGAGGGGGATCAGAATGTGGCAGGA
CGCGTTTCCGTGTAAGTTGAAGCGGATTTACGTGGTGGGGGGCTCCTTGT
GGTTGCTACGGGCAATGCGACTGGTGGTAGCGATGCTGGGGAAGAAACTG
CAGAATCGAGTGAGGGTGTTGCCGCATTTGGAGGCGTTGCACCGGGATGT
CGACAGGGACAATATTCCGCCTTGTTTGGGTGGAAGCTTGGAAAGGTTTG
AGTGGGGGGAGTGGGTGGCGAAGGTGGCGGCTCATGAAAGAGAGGAAAAG
GATCCAGTATGGACAGACAGGCAGATAGATGTAATAGAGGGGGATTGTTG
TCCACGATTTTGAGTATAAATCAGAAGTTATTTTTCTATCCGGAGGAGAG
GAAACAGAGCGGAAAGGGAAAATGAGAAGAATCTCTTGTATGTCTCGCAT
TAGGATATTAGGATACCAGACGGAAGTCAGGGAGAAGTTCCGTCACAATT
TTGTCAACAATGAAGAGTAAAAATAGCCTGTCTAGAGGGAGGGTAGTGTC
CATGAGAGCCTGGGCAGTGCGCATGCCCGCTTGTCTTCCACTCTTGATTT
GATTTGACTGTATGTTTTCACTTTGGCGATCGCGTGTATTGTGGGTAAAG
AGAACACAAGACAGAAAGACACGCGAAAACTGAAGAAAGAAATACAATTT
CAAGAGAATCGCTGCGA
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Coding sequence (CDS) from alignment at scaffold_22:272348..273564+

>mRNA_7959 ID=mRNA_7959|Name=jgi.p|Nanoce1779_2|600694|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_22:272348..273564+ (Nannochloropsis oceanica)
ATGCGAGTCGCCATGCAAGCCGATGATGCCTCTCTGCCCCAAGCTACCCG
CGTGGGCTCTGCATGCCCTCCTCCACCGCCTCTCCCCCGCGGCTTTCTTC
TGCAATGTCTCCGTTCCCGCTCAGGCGTGTATGACGAAGCTTTGATGGTC
GCGCGGAACTTCCTGGCTTTTCGGCGGGGGGCCGGTTGGCCCTTACGGCT
GAAGGCCAAGGACGTGATGGGAGGTCCCCTAGAGTCAGGAGCTCATTGGA
TCTTGCCGGGCAGGGATAAGGAAGGCAGGGGGATCTTCGTTTTCAATGTG
GGGAAAATTGACACTCGGAAGGCGAGCTTGGAGAAATACCAGCAGGTGGG
CGCCTATTTGGTTGAGAGGTTCACAAGGGATGAGGAAATGCAGCGGACGG
GATTGGTCATGATTGTTAATTTGGCCTCGGTCCCGTTTGGGTTATGCCGA
GCCTTGGTTTCGTTGAAAGATGCCAAGAGGGGGATCAGAATGTGGCAGGA
CGCGTTTCCGTGTAAGTTGAAGCGGATTTACGTGGTGGGGGGCTCCTTGT
GGTTGCTACGGGCAATGCGACTGGTGGTAGCGATGCTGGGGAAGAAACTG
CAGAATCGAGTGAGGGTGTTGCCGCATTTGGAGGCGTTGCACCGGGATGT
CGACAGGGACAATATTCCGCCTTGTTTGGGTGGAAGCTTGGAAAGGTTTG
AGTGGGGGGAGTGGGTGGCGAAGGTGGCGGCTCATGAAAGAGAGGAAAAG
GATCCAGTATGGACAGACAGGCAGATAGATGTAATAGAGGGGGATTGTTG
TCCACGATTTTGA
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Synonyms
Publications