jgi.p|Nanoce1779_2|600690, mRNA_7958 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600690
Unique Name	mRNA_7958
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2625
Alignment location	scaffold_22:269192..271816 -

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Properties


Property Name	Value
TranscriptId	600776
Track	FilteredModels2
ProteinId	600690

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:269192..271816 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600690	gene_7958	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600690	mRNA_7958-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7958	CDS_7958	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:269192..271816-
coding sequence from alignment at scaffold_22:269192..271816-

mRNA sequence

>mRNA_7958 ID=mRNA_7958|Name=jgi.p|Nanoce1779_2|600690|organism=Nannochloropsis oceanica|type=mRNA|length=2625bp
GGTTCCAGTTGCTTGATCCTTGAGTACCATTCAGATGTCTCAGTGGATCT
CGGGGATCTCGTTGATTTAGTTCAATATCCCCCGCTTTTATTCTGGGGCG
ATGTATGGAAGAGGAGGGAAAACCGGCAGGGGTAGGTAGCTTGGGGAAAA
ACCATTGAACCTTTGCGTCAGAGACGCCAATAGCATCATCTCGCCGATAG
AAAGCAAGCCGTCGCTTGCTTAAACGTAAAACGCCCACTCCAATCCCTCC
GCACACCAAATAAGCACAGGGCGACCGGAACCACCATCAAGCAGCGTACT
GACTGGAGGGGTTTGCGGGCTTTCAACAGGAGAAGCCGTCGTCATCAAGA
CTCCTCCAGGCGCTACTCTCCTTGTCCCGCCTTGGCCCCATTGAAACAAA
TCACATGAGCCGATCTCCTTCACTATCGGAAGGAGACGACGATGGCCTTA
ACAACGGTGGTTATCTCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTT
GACCGCACTTCCAGCCCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTC
CTCCGACATCAGCGCCGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAG
TCAAGTTGCGAAATAATGAAGTAGAGACCATCCTGCTCACCGTCGATGAC
GACGCCGAGGTGCTGGCGTCCAATTTTACACAACACCAGCACGCCCTCCC
TCCCTCCCTCCAGGACGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGG
ACATGGCTCGCGAAATTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCA
ATGCGTGCCCATGTCGCGGCATTGGAAGATAAATCAACATCAGCAGCAGC
AGCAACAGCAGCGGCTGCAGCATCAACCATGGCAACGATAGGAGGGGTTC
AGAGAGATAAGGAGGAGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATG
GATAGCACCGAAAATCGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGA
AACACAATTGATTCGGCGATCAGATCGAATTATTTTGTTGGAAGAAGGGG
CGTCAACGACCGCAGCCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAG
AGGCTGCGAGAGTCAGAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAA
GAGGACGGAGAGGGATGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCA
TGGCCGAGTCGAAGGAAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGAC
GCCGAGGTGGAGCGCGACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTG
GGAATTGCGGGTGCTGCAACAGGTGGATAAAACCCACGAGGATACGGATG
AAGGGTTGACAATGGTCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCG
GCGTATGGAGAGATGAGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCG
CTGGCTGGAGGGGGTGATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGA
AGAAACTGAGAGAGAGACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATG
AGCAGAGAATTGATGAAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAG
GGTGGCGAGTCAGGATTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGA
GGAGGAGGAGTCATTTTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTG
TTGTGGAGAGAGGATGAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCA
AGGAGGAGAAGGAGGCAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCAC
CTTCATCTTGGCAGAAGCAGCACGCCACGATTTCCGCGATCGAAAGTGCT
TCGTGCGCATGTAAGTCACCAGCATCGCAGCAACAAAAGCTTCAGCATCA
GCCGCCGCCGCGAGTACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCAC
ATCGGGAAACCCGCGCGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCC
TCCTCCTCCTCCTCTTCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTC
GAAATCATACGGCCCCGACATTCGCCGCATGGTTCATCTACCGCATTTTG
AAGAAATGATTGAAGCAGAGGAGGGAGACGAGACAGACGACATTTACCCC
ATCCCGTCTGAACGAGCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTT
CATTGCGTGAGTTGAAGTTGGTTATTTAATTTTCTGCCGTTCCTACACTC
ATATAGAACTATCGCATGCAAGCTGACATCCTCTAGGACTTGCATGCGTG
GGCAAGCTTTCCAACAAAAAAATGTTGCATATACTTACCCCTATTCTTGT
CCGAGTTTTTCTAGCGATTTTGACAGGTTTTTCATCAGGCAAAGTCCCCG
TTATTCAGGATGTGAAGAGGAAATGGGAGAGTGCGTGTGGGAGGTGGACA
AAGCTTGAGTAGTGAAAAGGGTGTTTTTCTAAAAGATAAAAAATGTTTAG
GCAAAGGCAAGCTGGAGGTGTGTGTGTGAGTGAGCAACCAGGAGGTACAT
GGCAAGAACTAGTACGGTTACAACTGCAGACCCATAAGGGAAAAAAGAAA
ATTTATTAACATCCATACCTTTGTC

protein sequence of jgi.p|Nanoce1779_2|600690

>mRNA_7958-protein ID=mRNA_7958-protein|Name=jgi.p|Nanoce1779_2|600690|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MSRSPSLSEGDDDGLNNGGYLSFGGSGLQKHFDRTSSPLSFFSSSYSHSS
DISAALYVDVAVPFQVKLRNNEVETILLTVDDDAEVLASNFTQHQHALPP
SLQDALAQQLRVRQLDMAREIIKALDQDARAAMRAHVAALEDKSTSAAAA
TAAAAASTMATIGGVQRDKEEEKEGGKEEGEMDSTENRRVQEAEYQGLET
QLIRRSDRIILLEEGASTTAAESQDVVKHLKERLRESEVARGKVAGKLKR
TERDARRLEEQVVATMAESKEEASCLEQRLRDAEVERDEMGRRLARREWE
LRVLQQVDKTHEDTDEGLTMVEEIQKRRHVEAAYGEMSKRLRRKEEQVRW
LEGVMASQDFQRKPLKKLRERLREVEEAYSEMSRELMKRDEEVRMLEVRV
ASQDLELKVLGEVVRRRRSHFHGQARGLGSVLLWREDEEEDVAEREGKQG
GEGGSQEGGTRASDSPSSWQKQHATISAIESASCACKSPASQQQKLQHQP
PPRVQEKHAAKSVRPHRETRASMSSRSSYSSSSSSSSSSSLSPPPSFASK
SYGPDIRRMVHLPHFEEMIEAEEGDETDDIYPIPSERATCPSSTPAAAFI
A*

mRNA from alignment at scaffold_22:269192..271816-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7958 ID=mRNA_7958|Name=jgi.p|Nanoce1779_2|600690|organism=Nannochloropsis oceanica|type=mRNA|length=2625bp|location=Sequence derived from alignment at scaffold_22:269192..271816- (Nannochloropsis oceanica)
GGTTCCAGTTGCTTGATCCTTGAGTACCATTCAGATGTCTCAGTGGATCT
CGGGGATCTCGTTGATTTAGTTCAATATCCCCCGCTTTTATTCTGGGGCG
ATGTATGGAAGAGGAGGGAAAACCGGCAGGGGTAGGTAGCTTGGGGAAAA
ACCATTGAACCTTTGCGTCAGAGACGCCAATAGCATCATCTCGCCGATAG
AAAGCAAGCCGTCGCTTGCTTAAACGTAAAACGCCCACTCCAATCCCTCC
GCACACCAAATAAGCACAGGGCGACCGGAACCACCATCAAGCAGCGTACT
GACTGGAGGGGTTTGCGGGCTTTCAACAGGAGAAGCCGTCGTCATCAAGA
CTCCTCCAGGCGCTACTCTCCTTGTCCCGCCTTGGCCCCATTGAAACAAA
TCACATGAGCCGATCTCCTTCACTATCGGAAGGAGACGACGATGGCCTTA
ACAACGGTGGTTATCTCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTT
GACCGCACTTCCAGCCCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTC
CTCCGACATCAGCGCCGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAG
TCAAGTTGCGAAATAATGAAGTAGAGACCATCCTGCTCACCGTCGATGAC
GACGCCGAGGTGCTGGCGTCCAATTTTACACAACACCAGCACGCCCTCCC
TCCCTCCCTCCAGGACGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGG
ACATGGCTCGCGAAATTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCA
ATGCGTGCCCATGTCGCGGCATTGGAAGATAAATCAACATCAGCAGCAGC
AGCAACAGCAGCGGCTGCAGCATCAACCATGGCAACGATAGGAGGGGTTC
AGAGAGATAAGGAGGAGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATG
GATAGCACCGAAAATCGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGA
AACACAATTGATTCGGCGATCAGATCGAATTATTTTGTTGGAAGAAGGGG
CGTCAACGACCGCAGCCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAG
AGGCTGCGAGAGTCAGAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAA
GAGGACGGAGAGGGATGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCA
TGGCCGAGTCGAAGGAAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGAC
GCCGAGGTGGAGCGCGACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTG
GGAATTGCGGGTGCTGCAACAGGTGGATAAAACCCACGAGGATACGGATG
AAGGGTTGACAATGGTCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCG
GCGTATGGAGAGATGAGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCG
CTGGCTGGAGGGGGTGATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGA
AGAAACTGAGAGAGAGACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATG
AGCAGAGAATTGATGAAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAG
GGTGGCGAGTCAGGATTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGA
GGAGGAGGAGTCATTTTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTG
TTGTGGAGAGAGGATGAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCA
AGGAGGAGAAGGAGGCAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCAC
CTTCATCTTGGCAGAAGCAGCACGCCACGATTTCCGCGATCGAAAGTGCT
TCGTGCGCATGTAAGTCACCAGCATCGCAGCAACAAAAGCTTCAGCATCA
GCCGCCGCCGCGAGTACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCAC
ATCGGGAAACCCGCGCGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCC
TCCTCCTCCTCCTCTTCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTC
GAAATCATACGGCCCCGACATTCGCCGCATGGTTCATCTACCGCATTTTG
AAGAAATGATTGAAGCAGAGGAGGGAGACGAGACAGACGACATTTACCCC
ATCCCGTCTGAACGAGCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTT
CATTGCGTGAGTTGAAGTTGGTTATTTAATTTTCTGCCGTTCCTACACTC
ATATAGAACTATCGCATGCAAGCTGACATCCTCTAGGACTTGCATGCGTG
GGCAAGCTTTCCAACAAAAAAATGTTGCATATACTTACCCCTATTCTTGT
CCGAGTTTTTCTAGCGATTTTGACAGGTTTTTCATCAGGCAAAGTCCCCG
TTATTCAGGATGTGAAGAGGAAATGGGAGAGTGCGTGTGGGAGGTGGACA
AAGCTTGAGTAGTGAAAAGGGTGTTTTTCTAAAAGATAAAAAATGTTTAG
GCAAAGGCAAGCTGGAGGTGTGTGTGTGAGTGAGCAACCAGGAGGTACAT
GGCAAGAACTAGTACGGTTACAACTGCAGACCCATAAGGGAAAAAAGAAA
ATTTATTAACATCCATACCTTTGTC

Coding sequence (CDS) from alignment at scaffold_22:269192..271816-

>mRNA_7958 ID=mRNA_7958|Name=jgi.p|Nanoce1779_2|600690|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_22:269192..271816- (Nannochloropsis oceanica)
ATGAGCCGATCTCCTTCACTATCGGAAGGAGACGACGATGGCCTTAACAA
CGGTGGTTATCTCAGTTTCGGTGGCAGCGGATTACAAAAGCATTTTGACC
GCACTTCCAGCCCATTGAGCTTCTTCTCCTCCTCCTACTCTCACTCCTCC
GACATCAGCGCCGCCCTTTACGTCGACGTTGCCGTGCCCTTTCAAGTCAA
GTTGCGAAATAATGAAGTAGAGACCATCCTGCTCACCGTCGATGACGACG
CCGAGGTGCTGGCGTCCAATTTTACACAACACCAGCACGCCCTCCCTCCC
TCCCTCCAGGACGCGTTGGCCCAGCAACTTCGCGTACGGCAGTTGGACAT
GGCTCGCGAAATTATCAAGGCTCTAGACCAAGATGCGCGGGCAGCAATGC
GTGCCCATGTCGCGGCATTGGAAGATAAATCAACATCAGCAGCAGCAGCA
ACAGCAGCGGCTGCAGCATCAACCATGGCAACGATAGGAGGGGTTCAGAG
AGATAAGGAGGAGGAAAAGGAGGGGGGAAAGGAGGAGGGAGAAATGGATA
GCACCGAAAATCGTCGAGTGCAGGAGGCTGAGTACCAGGGATTAGAAACA
CAATTGATTCGGCGATCAGATCGAATTATTTTGTTGGAAGAAGGGGCGTC
AACGACCGCAGCCGAGTCTCAGGACGTGGTGAAGCATCTGAAGGAGAGGC
TGCGAGAGTCAGAGGTAGCGCGTGGGAAAGTGGCTGGGAAGTTGAAGAGG
ACGGAGAGGGATGCGCGGAGGTTAGAAGAGCAGGTGGTGGCGACCATGGC
CGAGTCGAAGGAAGAGGCGTCTTGTCTGGAGCAGAGGCTACGAGACGCCG
AGGTGGAGCGCGACGAGATGGGGAGGCGCTTGGCAAGGAGGGAGTGGGAA
TTGCGGGTGCTGCAACAGGTGGATAAAACCCACGAGGATACGGATGAAGG
GTTGACAATGGTCGAGGAGATACAGAAGCGCAGGCACGTTGAGGCGGCGT
ATGGAGAGATGAGTAAGAGATTAAGGAGGAAGGAGGAGCAAGTGCGCTGG
CTGGAGGGGGTGATGGCGAGTCAAGATTTTCAGCGGAAACCCTTGAAGAA
ACTGAGAGAGAGACTGCGGGAGGTCGAAGAAGCGTACTCAGAAATGAGCA
GAGAATTGATGAAGAGGGATGAGGAGGTGCGCATGCTGGAGGTGAGGGTG
GCGAGTCAGGATTTGGAATTGAAGGTGCTGGGGGAGGTAGTGAGGAGGAG
GAGGAGTCATTTTCATGGACAGGCGCGGGGTCTGGGCAGCGTCTTGTTGT
GGAGAGAGGATGAGGAGGAGGATGTGGCTGAAAGGGAGGGAAAGCAAGGA
GGAGAAGGAGGCAGTCAAGAGGGAGGGACTAGGGCGAGCGACTCACCTTC
ATCTTGGCAGAAGCAGCACGCCACGATTTCCGCGATCGAAAGTGCTTCGT
GCGCATGTAAGTCACCAGCATCGCAGCAACAAAAGCTTCAGCATCAGCCG
CCGCCGCGAGTACAGGAGAAGCACGCGGCTAAGTCAGTGCGGCCACATCG
GGAAACCCGCGCGTCAATGTCATCTCGCTCTTCTTACTCCTCCTCCTCCT
CCTCCTCCTCTTCATCTTCTCTGTCTCCTCCTCCTTCTTTTGCTTCGAAA
TCATACGGCCCCGACATTCGCCGCATGGTTCATCTACCGCATTTTGAAGA
AATGATTGAAGCAGAGGAGGGAGACGAGACAGACGACATTTACCCCATCC
CGTCTGAACGAGCAACCTGTCCGTCTTCTACTCCGGCGGCCGCTTTCATT
GCGTGA

Synonyms

Publications