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Properties
| Property Name | Value |
|---|
| TranscriptId | 600746 |
| Track | FilteredModels2 |
| ProteinId | 600660 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:254999..257331 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7953 ID=mRNA_7953|Name=jgi.p|Nanoce1779_2|600660|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp
AGGCACCGCTTGTGTGTGATTTTCGTACCAAGCGGTATTCATGGTGAGAG
CATTCATCGGCGCGGCCGTGGCCACGGCTAGTTTGACCATCGGATCTGCC
GCCTCCCTTACCAGTCAGGCTTCCGCTACGTCTTTGGATGCAGAGCGCCA
GGCGTTAGAGCAATGGAGCAGTAAGCTGGCGGAGCGTGAGGCACAGCTAC
GAGCACGGGAGAAGGCGCTGGGCGAAAAGGTGCTGGGGGGGGGGAAGGGC
CGCACTGTGGCGACGGGCAGCTGGCGGAAGAGTCTGGTCACGGGTTTGGC
GGTGGAGGGGGCCGGGGCGGAAGTGCTCGTATTCGAGGATACGTTCGAGG
AGCTCGACATGGACATCTGGGAGCATGACATCACCATGTCCGGCGGCGGG
AATTGGGAGTTCCAGTACTACACCAACAATCGCACCAACAGCTTCGTGGA
AGACGGCGTGCTTTACCTGCAGCCCACGCTGACGGCCGAGACGTTGGGGG
AGGAGAACGTGCTGGGCGAGAAGCCGTTCCGCTACGACATGTGGGGCATG
TGGCCGTCCGACGCCTGCACGTCCAACGCCTTCTACGGTTGCGAGCGTAT
GGCAGATGCCGGCGCGCAGCTGGTGATTAACCCGGTGCAGTCGGCGCGCC
TGCGTACCACGGGCACCTTCACGTTTCAATATGGTCGCCTGGAGGTGGAG
GCCAAGCTGCCGCGCGGGGATTGGCTCTGGCCCGCCATCTGGCTGCTACC
CGAGAAGAATGCCTACGGGCAGTGGCCAGCCTCGGGCGAAATCGACTTGA
TGGAGTCGCGAGGCAATAAACCAGGGTACAGTAAGGGTGGTTTCGACTCC
TTCGGCAGCTGCATGCACTGGGGGCCCTACTTTGCGCTTGACAAGTTCGA
GATGACCTGCCAGTCGTACACGCTCCCCAAAGGCACAGGCACCTTCAATG
ACGACTTCCATGTCTTCGGTCTGGCCTGGGACGAGCACGGCCTCTTCACC
TACCTGGACACGGAGGACCAAAAGATCCTTGAGGTCAAGTTCGACAAACC
CTTCTTCTCGCGGGGCGCCTTCGCCGACGTGCCCGGCACGCATAACCCCT
GGGAGGGCCGTTCCAACGCCGCGCCCTTCGACCAGCCGTTTTATCTGATC
CTGAACGTTGCTGTGGGTGGCCTCTCCAACTTTTTTGTGGATGGTGAGGA
CGGCAAGCCGTGGACCAACACGGGCACCGGCGCGCCCTACCTGTTCGCCA
AGGCCAAGGATGTCTGGTACCCGACATGGGCCGGTCGGGACTCTGCGCTG
CAGGTTAAGTCCGTGCGCGTCTGGCAGAAGCCCGGGCAGGGCACGGCCAA
GGTCCTGGGTCAAAAGCTGGGGGCTGGCACAGCCATAGCCAGCGCAGACA
CCGGTGCGGGGGACGAGTCCGTCATCCCCCCCACCTACCGTCACAAGAGC
AGCGGGGGCGCCAAAAGAAGTGGCATGGCAGGCAGTGGCAGCGCCGGCGG
CTGGATCTTTGGCTCTTTGTTGCTCCTAGTGCTTGTCAGCGCTGGGGTAG
CTTTCGGAGTGTATTTGCGCATGGGCGGCTTCCCAGGCATTGGCAATAGG
GTGGGTGGCGGTGGTGGGGGAGCCTATACGAGTGTGACAGGGGCAGCACC
ATACCAAGCCGCCTTTTCCTCTGCCCCGGCAACAACTTCGACACAACAGC
GCCGATAGAGAGTAAAAAGCAGCGTGAACATCTTTGCTTGGTGCTTGATT
CGTAAAAACTGATGTGGGCCTGGGACCAAACCTTGTGGAGTGATTCCACG
CACACTGCTGGCCATCCTTGCAAGCAAAGACTAGGGTATAGGGACCGGCG
AATAGGCACCACCGTCTTCTAATGCATGTTGTGGTGATTTCTTCGTGAAC
ATGGAAGTTTCTGCATTACGTATGAAGATAGCGTTACGAATAAAGGAGAT
AGCATGAAAGGTCCCTGATGCAGAGACTATGGAGGCGAAATAGCGATACG
GTGTATGGAGACATTTGGATGGCGGGGGAGGGCATTTTTGGGCGAGAAGG
AAGGATAGTTTCTAAAGAACCAATT back to topprotein sequence of jgi.p|Nanoce1779_2|600660 >mRNA_7953-protein ID=mRNA_7953-protein|Name=jgi.p|Nanoce1779_2|600660|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MVRAFIGAAVATASLTIGSAASLTSQASATSLDAERQALEQWSSKLAERE
AQLRAREKALGEKVLGGGKGRTVATGSWRKSLVTGLAVEGAGAEVLVFED
TFEELDMDIWEHDITMSGGGNWEFQYYTNNRTNSFVEDGVLYLQPTLTAE
TLGEENVLGEKPFRYDMWGMWPSDACTSNAFYGCERMADAGAQLVINPVQ
SARLRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKNAYGQWPASGE
IDLMESRGNKPGYSKGGFDSFGSCMHWGPYFALDKFEMTCQSYTLPKGTG
TFNDDFHVFGLAWDEHGLFTYLDTEDQKILEVKFDKPFFSRGAFADVPGT
HNPWEGRSNAAPFDQPFYLILNVAVGGLSNFFVDGEDGKPWTNTGTGAPY
LFAKAKDVWYPTWAGRDSALQVKSVRVWQKPGQGTAKVLGQKLGAGTAIA
SADTGAGDESVIPPTYRHKSSGGAKRSGMAGSGSAGGWIFGSLLLLVLVS
AGVAFGVYLRMGGFPGIGNRVGGGGGGAYTSVTGAAPYQAAFSSAPATTS
TQQRR* back to topmRNA from alignment at scaffold_22:254999..257331+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7953 ID=mRNA_7953|Name=jgi.p|Nanoce1779_2|600660|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at scaffold_22:254999..257331+ (Nannochloropsis oceanica)
AGGCACCGCTTGTGTGTGATTTTCGTACCAAGCGGTATTCATGGTGAGAG
CATTCATCGGCGCGGCCGTGGCCACGGCTAGTTTGACCATCGGATCTGCC
GCCTCCCTTACCAGTCAGGCTTCCGCTACGTCTTTGGATGCAGAGCGCCA
GGCGTTAGAGCAATGGAGCAGTAAGGTAAGCGCGTAGGAGGGATGTAATG
GCTTGGTGGGATGCCCTGGTCCATGCTGGTGCGCTGGACCATGCATAGAC
CAATAGGAACCCGTGAATATTTTTGGAGTGTGGACTTTGGATCAAACATG
AATTGGAGGCGACAAGGGCATGTTTGTAGCTGTCATCTGTCGGCCTCTAT
CTCTGTGAATATTTATGGAATGCATCTCAGCACGCACTAATCCTGCTCCA
CTCCCACCCTCCCTCCCTTTCTCCCTCCTGAAGCTGGCGGAGCGTGAGGC
ACAGCTACGAGCACGGGAGAAGGCGCTGGGCGAAAAGGTGCTGGGGGGGG
GGAAGGGCCGCACTGTGGCGACGGGCAGCTGGCGGAAGAGTCTGGTCACG
GGTTTGGCGGTGGAGGGGGCCGGGGCGGAAGTGCTCGTATTCGAGGATAC
GTTCGAGGAGCTCGACATGGACATCTGGGAGCATGACATCACCATGTCCG
GCGGCGGGAATTGGGAGTTCCAGTACTACACCAACAATCGCACCAACAGC
TTCGTGGAAGACGGCGTGCTTTACCTGCAGCCCACGCTGACGGCCGAGAC
GTTGGGGGAGGAGAACGTGCTGGGCGAGAAGCCGTTCCGCTACGACATGT
GGGGCATGTGGCCGTCCGACGCCTGCACGTCCAACGCCTTCTACGGTTGC
GAGCGTATGGCAGATGCCGGCGCGCAGCTGGTGATTAACCCGGTGCAGTC
GGCGCGCCTGCGTACCACGGGCACCTTCACGTTTCAATATGGTCGCCTGG
AGGTGGAGGCCAAGCTGCCGCGCGGGGATTGGCTCTGGCCCGCCATCTGG
CTGCTACCCGAGAAGAATGCCTACGGGCAGTGGCCAGCCTCGGGCGAAAT
CGACTTGATGGAGTCGCGAGGCAATAAACCAGGGTACAGTAAGGGTGGTT
TCGACTCCTTCGGCAGCTGCATGCACTGGGGGCCCTACTTTGCGCTTGAC
AAGTTCGAGATGACCTGCCAGTCGTACACGCTCCCCAAAGGCACAGGCAC
CTTCAATGACGACTTCCATGTCTTCGGTCTGGCCTGGGACGAGCACGGCC
TCTTCACCTACCTGGACACGGAGGACCAAAAGATCCTTGAGGTCAAGTTC
GACAAACCCTTCTTCTCGCGGGGCGCCTTCGCCGACGTGCCCGGCACGCA
TAACCCCTGGGAGGGCCGTTCCAACGCCGCGCCCTTCGACCAGCCGTTTT
ATCTGATCCTGAACGTTGCTGTGGGTGGCCTCTCCAACTTTTTTGTGGAT
GGTGAGGACGGCAAGCCGTGGACCAACACGGGCACCGGCGCGCCCTACCT
GTTCGCCAAGGCCAAGGATGTCTGGTACCCGACATGGGCCGGTCGGGACT
CTGCGCTGCAGGTTAAGTCCGTGCGCGTCTGGCAGAAGCCCGGGCAGGGC
ACGGCCAAGGTCCTGGGTCAAAAGCTGGGGGCTGGCACAGCCATAGCCAG
CGCAGACACCGGTGCGGGGGACGAGTCCGTCATCCCCCCCACCTACCGTC
ACAAGAGCAGCGGGGGCGCCAAAAGAAGTGGCATGGCAGGCAGTGGCAGC
GCCGGCGGCTGGATCTTTGGCTCTTTGTTGCTCCTAGTGCTTGTCAGCGC
TGGGGTAGCTTTCGGAGTGTATTTGCGCATGGGCGGCTTCCCAGGCATTG
GCAATAGGGTGGGTGGCGGTGGTGGGGGAGCCTATACGAGTGTGACAGGG
GCAGCACCATACCAAGCCGCCTTTTCCTCTGCCCCGGCAACAACTTCGAC
ACAACAGCGCCGATAGAGAGTAAAAAGCAGCGTGAACATCTTTGCTTGGT
GCTTGATTCGTAAAAACTGATGTGGGCCTGGGACCAAACCTTGTGGAGTG
ATTCCACGCACACTGCTGGCCATCCTTGCAAGCAAAGACTAGGGTATAGG
GACCGGCGAATAGGCACCACCGTCTTCTAATGCATGTTGTGGTGATTTCT
TCGTGAACATGGAAGTTTCTGCATTACGTATGAAGATAGCGTTACGAATA
AAGGAGATAGCATGAAAGGTCCCTGATGCAGAGACTATGGAGGCGAAATA
GCGATACGGTGTATGGAGACATTTGGATGGCGGGGGAGGGCATTTTTGGG
CGAGAAGGAAGGATAGTTTCTAAAGAACCAATT back to topCoding sequence (CDS) from alignment at scaffold_22:254999..257331+ >mRNA_7953 ID=mRNA_7953|Name=jgi.p|Nanoce1779_2|600660|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_22:254999..257331+ (Nannochloropsis oceanica)
ATGGTGAGAGCATTCATCGGCGCGGCCGTGGCCACGGCTAGTTTGACCAT
CGGATCTGCCGCCTCCCTTACCAGTCAGGCTTCCGCTACGTCTTTGGATG
CAGAGCGCCAGGCGTTAGAGCAATGGAGCAGTAAGCTGGCGGAGCGTGAG
GCACAGCTACGAGCACGGGAGAAGGCGCTGGGCGAAAAGGTGCTGGGGGG
GGGGAAGGGCCGCACTGTGGCGACGGGCAGCTGGCGGAAGAGTCTGGTCA
CGGGTTTGGCGGTGGAGGGGGCCGGGGCGGAAGTGCTCGTATTCGAGGAT
ACGTTCGAGGAGCTCGACATGGACATCTGGGAGCATGACATCACCATGTC
CGGCGGCGGGAATTGGGAGTTCCAGTACTACACCAACAATCGCACCAACA
GCTTCGTGGAAGACGGCGTGCTTTACCTGCAGCCCACGCTGACGGCCGAG
ACGTTGGGGGAGGAGAACGTGCTGGGCGAGAAGCCGTTCCGCTACGACAT
GTGGGGCATGTGGCCGTCCGACGCCTGCACGTCCAACGCCTTCTACGGTT
GCGAGCGTATGGCAGATGCCGGCGCGCAGCTGGTGATTAACCCGGTGCAG
TCGGCGCGCCTGCGTACCACGGGCACCTTCACGTTTCAATATGGTCGCCT
GGAGGTGGAGGCCAAGCTGCCGCGCGGGGATTGGCTCTGGCCCGCCATCT
GGCTGCTACCCGAGAAGAATGCCTACGGGCAGTGGCCAGCCTCGGGCGAA
ATCGACTTGATGGAGTCGCGAGGCAATAAACCAGGGTACAGTAAGGGTGG
TTTCGACTCCTTCGGCAGCTGCATGCACTGGGGGCCCTACTTTGCGCTTG
ACAAGTTCGAGATGACCTGCCAGTCGTACACGCTCCCCAAAGGCACAGGC
ACCTTCAATGACGACTTCCATGTCTTCGGTCTGGCCTGGGACGAGCACGG
CCTCTTCACCTACCTGGACACGGAGGACCAAAAGATCCTTGAGGTCAAGT
TCGACAAACCCTTCTTCTCGCGGGGCGCCTTCGCCGACGTGCCCGGCACG
CATAACCCCTGGGAGGGCCGTTCCAACGCCGCGCCCTTCGACCAGCCGTT
TTATCTGATCCTGAACGTTGCTGTGGGTGGCCTCTCCAACTTTTTTGTGG
ATGGTGAGGACGGCAAGCCGTGGACCAACACGGGCACCGGCGCGCCCTAC
CTGTTCGCCAAGGCCAAGGATGTCTGGTACCCGACATGGGCCGGTCGGGA
CTCTGCGCTGCAGGTTAAGTCCGTGCGCGTCTGGCAGAAGCCCGGGCAGG
GCACGGCCAAGGTCCTGGGTCAAAAGCTGGGGGCTGGCACAGCCATAGCC
AGCGCAGACACCGGTGCGGGGGACGAGTCCGTCATCCCCCCCACCTACCG
TCACAAGAGCAGCGGGGGCGCCAAAAGAAGTGGCATGGCAGGCAGTGGCA
GCGCCGGCGGCTGGATCTTTGGCTCTTTGTTGCTCCTAGTGCTTGTCAGC
GCTGGGGTAGCTTTCGGAGTGTATTTGCGCATGGGCGGCTTCCCAGGCAT
TGGCAATAGGGTGGGTGGCGGTGGTGGGGGAGCCTATACGAGTGTGACAG
GGGCAGCACCATACCAAGCCGCCTTTTCCTCTGCCCCGGCAACAACTTCG
ACACAACAGCGCCGATAGATGGTGAGAGCATTCATCGGCGCGGCCGTGGC
CACGGCTAGTTTGACCATCGGATCTGCCGCCTCCCTTACCAGTCAGGCTT
CCGCTACGTCTTTGGATGCAGAGCGCCAGGCGTTAGAGCAATGGAGCAGT
AAGCTGGCGGAGCGTGAGGCACAGCTACGAGCACGGGAGAAGGCGCTGGG
CGAAAAGGTGCTGGGGGGGGGGAAGGGCCGCACTGTGGCGACGGGCAGCT
GGCGGAAGAGTCTGGTCACGGGTTTGGCGGTGGAGGGGGCCGGGGCGGAA
GTGCTCGTATTCGAGGATACGTTCGAGGAGCTCGACATGGACATCTGGGA
GCATGACATCACCATGTCCGGCGGCGGGAATTGGGAGTTCCAGTACTACA
CCAACAATCGCACCAACAGCTTCGTGGAAGACGGCGTGCTTTACCTGCAG
CCCACGCTGACGGCCGAGACGTTGGGGGAGGAGAACGTGCTGGGCGAGAA
GCCGTTCCGCTACGACATGTGGGGCATGTGGCCGTCCGACGCCTGCACGT
CCAACGCCTTCTACGGTTGCGAGCGTATGGCAGATGCCGGCGCGCAGCTG
GTGATTAACCCGGTGCAGTCGGCGCGCCTGCGTACCACGGGCACCTTCAC
GTTTCAATATGGTCGCCTGGAGGTGGAGGCCAAGCTGCCGCGCGGGGATT
GGCTCTGGCCCGCCATCTGGCTGCTACCCGAGAAGAATGCCTACGGGCAG
TGGCCAGCCTCGGGCGAAATCGACTTGATGGAGTCGCGAGGCAATAAACC
AGGGTACAGTAAGGGTGGTTTCGACTCCTTCGGCAGCTGCATGCACTGGG
GGCCCTACTTTGCGCTTGACAAGTTCGAGATGACCTGCCAGTCGTACACG
CTCCCCAAAGGCACAGGCACCTTCAATGACGACTTCCATGTCTTCGGTCT
GGCCTGGGACGAGCACGGCCTCTTCACCTACCTGGACACGGAGGACCAAA
AGATCCTTGAGGTCAAGTTCGACAAACCCTTCTTCTCGCGGGGCGCCTTC
GCCGACGTGCCCGGCACGCATAACCCCTGGGAGGGCCGTTCCAACGCCGC
GCCCTTCGACCAGCCGTTTTATCTGATCCTGAACGTTGCTGTGGGTGGCC
TCTCCAACTTTTTTGTGGATGGTGAGGACGGCAAGCCGTGGACCAACACG
GGCACCGGCGCGCCCTACCTGTTCGCCAAGGCCAAGGATGTCTGGTACCC
GACATGGGCCGGTCGGGACTCTGCGCTGCAGGTTAAGTCCGTGCGCGTCT
GGCAGAAGCCCGGGCAGGGCACGGCCAAGGTCCTGGGTCAAAAGCTGGGG
GCTGGCACAGCCATAGCCAGCGCAGACACCGGTGCGGGGGACGAGTCCGT
CATCCCCCCCACCTACCGTCACAAGAGCAGCGGGGGCGCCAAAAGAAGTG
GCATGGCAGGCAGTGGCAGCGCCGGCGGCTGGATCTTTGGCTCTTTGTTG
CTCCTAGTGCTTGTCAGCGCTGGGGTAGCTTTCGGAGTGTATTTGCGCAT
GGGCGGCTTCCCAGGCATTGGCAATAGGGTGGGTGGCGGTGGTGGGGGAG
CCTATACGAGTGTGACAGGGGCAGCACCATACCAAGCCGCCTTTTCCTCT
GCCCCGGCAACAACTTCGACACAACAGCGCCGATAG back to top
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