jgi.p|Nanoce1779_2|641532, mRNA_7952 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641532
Unique NamemRNA_7952
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length987
Alignment locationscaffold_22:252971..254307 -

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Properties
Property NameValue
TranscriptId641618
TrackFilteredModels2
ProteinId641532
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:252971..254307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641532gene_7952Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641532mRNA_7952-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7952CDS_7952Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7952 ID=mRNA_7952|Name=jgi.p|Nanoce1779_2|641532|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ATGACTCCACGGACATCGACGCAACCAGATCCAGCACCGCCTCCACGGCA
CGCGCTTACGCCCATATTGGCGGGTGGACTGGCAGGATGGATTGAAATCT
GCATTACATTTCCATGCGAGTTCACAAAGACTCAGTGCCAACTTAAGCAG
CACTACCAACTCAAAAAATTTACGGGCCCCTTGGACTGCGTGCGCTACAC
TTTGCGGACAAAAGGCCCATTCGGATTGTACAAGGGCTTGATGCCATGGC
TGGTTTTTGCTTTCCCACGTTCCGCTGTGCGCTTCTCTACCTACGAGTAT
GCCAGCCACGCGCTCCAGAACGGCTGGGGTCACAATGATGGGGGGGGGAA
AAAAGACCCGCTCTTGACCATGACTGCCGGCACATTGGCGGGCGCCATGG
AGTTTTTGACGGTTGGCACACCTATGCAGTGCATCCAGATCAAGATGGCA
CAAGACTCGTATTCCCTGAAGCCGCGCTTTGCGGGGTTTGCCGACGCGGT
TGTGGGCATCGTGCGAATGGAGGGTTTTTGGGGCGGACTTTACGCCGGTA
CCGGTCCCACAGTGCTCAAGGGCGCGCTTAATAATTGTATCCGCTTCTCG
ACTTATTCAGAATTAAAGCATCTCTATCAGCAATTCAAAACCGGGGATAT
CATCATCAGCAGCAGCAGCAGCAGCAGTGCCACCACCACCGTCTTCGTGG
AAAACTTGGCTCCTCTCAACGCGGCCGAGTCCATGCTTTTAGGCGCAATT
TCGGGAGGCTTGTCAGCAGTGGCAACACACCCCATAGACACCGTGAAGTC
CAACATGCAGTCGATAGGTGGGGGCGGCTACAGCACTTCCTGGGACTGCT
TCACGAAGATCCTCCAGAGTCAGGGCCTGCTGGGCCTGTACCGCGGCATG
TCGCCCCGCTTTATTCGCGTTTGCCTTGAGATTGGTCTTCACTTTACCAT
GTACGAACGTATTGCTCGATACTTGGACAGCATTTGA
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protein sequence of jgi.p|Nanoce1779_2|641532

>mRNA_7952-protein ID=mRNA_7952-protein|Name=jgi.p|Nanoce1779_2|641532|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MTPRTSTQPDPAPPPRHALTPILAGGLAGWIEICITFPCEFTKTQCQLKQ
HYQLKKFTGPLDCVRYTLRTKGPFGLYKGLMPWLVFAFPRSAVRFSTYEY
ASHALQNGWGHNDGGGKKDPLLTMTAGTLAGAMEFLTVGTPMQCIQIKMA
QDSYSLKPRFAGFADAVVGIVRMEGFWGGLYAGTGPTVLKGALNNCIRFS
TYSELKHLYQQFKTGDIIISSSSSSSATTTVFVENLAPLNAAESMLLGAI
SGGLSAVATHPIDTVKSNMQSIGGGGYSTSWDCFTKILQSQGLLGLYRGM
SPRFIRVCLEIGLHFTMYERIARYLDSI*
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mRNA from alignment at scaffold_22:252971..254307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7952 ID=mRNA_7952|Name=jgi.p|Nanoce1779_2|641532|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp|location=Sequence derived from alignment at scaffold_22:252971..254307- (Nannochloropsis oceanica)
ATGACTCCACGGACATCGACGCAACCAGATCCAGCACCGCCTCCACGGCA
CGCGCTTACGCCCATATTGGCGGGTGGACTGGCAGGATGTACGTGGGGAT
GGGAAAAGTAATTCTGGTCCCACTTACATACACCAACTTTTTTCTACTTC
AACCCGCTCAAATGCATACCGTTCCGACATCCAGGGATTGAAATCTGCAT
TACATTTCCATGCGAGTTCACAAAGACTCAGGTATGTCTCATTATCAGAA
ATCAATGTATTTTTCATTCCCTCCTTTCTGCGTTCCCCTCTTTTGTGTTT
CCCGTCTCATTCAATAGCGCACGCTGATTACACTCCCCCACCTCTCTCTC
CAGTGCCAACTTAAGCAGCACTACCAACTCAAAAAATTTACGGGCCCCTT
GGACTGCGTGCGCTACACTTTGCGGACAAAAGGCCCATTCGGATTGTACA
AGGGCTTGATGCCATGGCTGGTTTTTGCTTTCCCACGTTCCGCTGTGCGC
TTCTCTACCTACGAGTATGCCAGCCACGCGCTCCAGAACGGCTGGGGTCA
CAATGATGGGGGGGGGAAAAAAGACCCGCTCTTGACCATGACTGCCGGCA
CATTGGCGGGCGCCAGTACGTATTTAATGTTGGGGACATAGGAAAAGGTC
TTTGGTCTGGGGATAGGAACAAAGATCGACAAATTATCGCTTCCGTCATC
GTCACGCATCGCGTCCTGGCACTCTCTTCTTCCCACATTTTACACAGTGG
AGTTTTTGACGGTTGGCACACCTATGCAGTGCATCCAGATCAAGATGGCA
CAAGACTCGTATTCCCTGAAGCCGCGCTTTGCGGGGTTTGCCGACGCGGT
TGTGGGCATCGTGCGAATGGAGGGTTTTTGGGGCGGACTTTACGCCGGTA
CCGGTCCCACAGTGCTCAAGGGCGCGCTTAATAATTGTATCCGCTTCTCG
ACTTATTCAGAATTAAAGCATCTCTATCAGCAATTCAAAACCGGGGATAT
CATCATCAGCAGCAGCAGCAGCAGCAGTGCCACCACCACCGTCTTCGTGG
AAAACTTGGCTCCTCTCAACGCGGCCGAGTCCATGCTTTTAGGCGCAATT
TCGGGAGGCTTGTCAGCAGTGGCAACACACCCCATAGACACCGTGAAGTC
CAACATGCAGTCGATAGGTGGGGGCGGCTACAGCACTTCCTGGGACTGCT
TCACGAAGATCCTCCAGAGTCAGGGCCTGCTGGGCCTGTACCGCGGCATG
TCGCCCCGCTTTATTCGCGTTTGCCTTGAGATTGGTCTTCACTTTACCAT
GTACGAACGTATTGCTCGATACTTGGACAGCATTTGA
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Coding sequence (CDS) from alignment at scaffold_22:252971..254307-

>mRNA_7952 ID=mRNA_7952|Name=jgi.p|Nanoce1779_2|641532|organism=Nannochloropsis oceanica|type=CDS|length=3948bp|location=Sequence derived from alignment at scaffold_22:252971..254307- (Nannochloropsis oceanica)
TGGAGTTTTTGACGGTTGGCACACCTATGCAGTGCATCCAGATCAAGATG
GCACAAGACTCGTATTCCCTGAAGCCGCGCTTTGCGGGGTTTGCCGACGC
GGTTGTGGGCATCGTGCGAATGGAGGGTTTTTGGGGCGGACTTTACGCCG
GTACCGGTCCCACAGTGCTCAAGGGCGCGCTTAATAATTGTATCCGCTTC
TCGACTTATTCAGAATTAAAGCATCTCTATCAGCAATTCAAAACCGGGGA
TATCATCATCAGCAGCAGCAGCAGCAGCAGTGCCACCACCACCGTCTTCG
TGGAAAACTTGGCTCCTCTCAACGCGGCCGAGTCCATGCTTTTAGGCGCA
ATTTCGGGAGGCTTGTCAGCAGTGGCAACACACCCCATAGACACCGTGAA
GTCCAACATGCAGTCGATAGGTGGGGGCGGCTACAGCACTTCCTGGGACT
GCTTCACGAAGATCCTCCAGAGTCAGGGCCTGCTGGGCCTGTACCGCGGC
ATGTCGCCCCGCTTTATTCGCGTTTGCCTTGAGATTGGTCTTCACTTTAC
CATGTACGAACGTATTGCTCGATACTTGGACAGCATTTGATGCCAACTTA
AGCAGCACTACCAACTCAAAAAATTTACGGGCCCCTTGGACTGCGTGCGC
TACACTTTGCGGACAAAAGGCCCATTCGGATTGTACAAGGGCTTGATGCC
ATGGCTGGTTTTTGCTTTCCCACGTTCCGCTGTGCGCTTCTCTACCTACG
AGTATGCCAGCCACGCGCTCCAGAACGGCTGGGGTCACAATGATGGGGGG
GGGAAAAAAGACCCGCTCTTGACCATGACTGCCGGCACATTGGCGGGCGC
CAGGATTGAAATCTGCATTACATTTCCATGCGAGTTCACAAAGACTCAGA
TGACTCCACGGACATCGACGCAACCAGATCCAGCACCGCCTCCACGGCAC
GCGCTTACGCCCATATTGGCGGGTGGACTGGCAGGATTGGAGTTTTTGAC
GGTTGGCACACCTATGCAGTGCATCCAGATCAAGATGGCACAAGACTCGT
ATTCCCTGAAGCCGCGCTTTGCGGGGTTTGCCGACGCGGTTGTGGGCATC
GTGCGAATGGAGGGTTTTTGGGGCGGACTTTACGCCGGTACCGGTCCCAC
AGTGCTCAAGGGCGCGCTTAATAATTGTATCCGCTTCTCGACTTATTCAG
AATTAAAGCATCTCTATCAGCAATTCAAAACCGGGGATATCATCATCAGC
AGCAGCAGCAGCAGCAGTGCCACCACCACCGTCTTCGTGGAAAACTTGGC
TCCTCTCAACGCGGCCGAGTCCATGCTTTTAGGCGCAATTTCGGGAGGCT
TGTCAGCAGTGGCAACACACCCCATAGACACCGTGAAGTCCAACATGCAG
TCGATAGGTGGGGGCGGCTACAGCACTTCCTGGGACTGCTTCACGAAGAT
CCTCCAGAGTCAGGGCCTGCTGGGCCTGTACCGCGGCATGTCGCCCCGCT
TTATTCGCGTTTGCCTTGAGATTGGTCTTCACTTTACCATGTACGAACGT
ATTGCTCGATACTTGGACAGCATTTGATGCCAACTTAAGCAGCACTACCA
ACTCAAAAAATTTACGGGCCCCTTGGACTGCGTGCGCTACACTTTGCGGA
CAAAAGGCCCATTCGGATTGTACAAGGGCTTGATGCCATGGCTGGTTTTT
GCTTTCCCACGTTCCGCTGTGCGCTTCTCTACCTACGAGTATGCCAGCCA
CGCGCTCCAGAACGGCTGGGGTCACAATGATGGGGGGGGGAAAAAAGACC
CGCTCTTGACCATGACTGCCGGCACATTGGCGGGCGCCAGGATTGAAATC
TGCATTACATTTCCATGCGAGTTCACAAAGACTCAGATGACTCCACGGAC
ATCGACGCAACCAGATCCAGCACCGCCTCCACGGCACGCGCTTACGCCCA
TATTGGCGGGTGGACTGGCAGGATTGGAGTTTTTGACGGTTGGCACACCT
ATGCAGTGCATCCAGATCAAGATGGCACAAGACTCGTATTCCCTGAAGCC
GCGCTTTGCGGGGTTTGCCGACGCGGTTGTGGGCATCGTGCGAATGGAGG
GTTTTTGGGGCGGACTTTACGCCGGTACCGGTCCCACAGTGCTCAAGGGC
GCGCTTAATAATTGTATCCGCTTCTCGACTTATTCAGAATTAAAGCATCT
CTATCAGCAATTCAAAACCGGGGATATCATCATCAGCAGCAGCAGCAGCA
GCAGTGCCACCACCACCGTCTTCGTGGAAAACTTGGCTCCTCTCAACGCG
GCCGAGTCCATGCTTTTAGGCGCAATTTCGGGAGGCTTGTCAGCAGTGGC
AACACACCCCATAGACACCGTGAAGTCCAACATGCAGTCGATAGGTGGGG
GCGGCTACAGCACTTCCTGGGACTGCTTCACGAAGATCCTCCAGAGTCAG
GGCCTGCTGGGCCTGTACCGCGGCATGTCGCCCCGCTTTATTCGCGTTTG
CCTTGAGATTGGTCTTCACTTTACCATGTACGAACGTATTGCTCGATACT
TGGACAGCATTTGATGCCAACTTAAGCAGCACTACCAACTCAAAAAATTT
ACGGGCCCCTTGGACTGCGTGCGCTACACTTTGCGGACAAAAGGCCCATT
CGGATTGTACAAGGGCTTGATGCCATGGCTGGTTTTTGCTTTCCCACGTT
CCGCTGTGCGCTTCTCTACCTACGAGTATGCCAGCCACGCGCTCCAGAAC
GGCTGGGGTCACAATGATGGGGGGGGGAAAAAAGACCCGCTCTTGACCAT
GACTGCCGGCACATTGGCGGGCGCCAGGATTGAAATCTGCATTACATTTC
CATGCGAGTTCACAAAGACTCAGATGACTCCACGGACATCGACGCAACCA
GATCCAGCACCGCCTCCACGGCACGCGCTTACGCCCATATTGGCGGGTGG
ACTGGCAGGATTGGAGTTTTTGACGGTTGGCACACCTATGCAGTGCATCC
AGATCAAGATGGCACAAGACTCGTATTCCCTGAAGCCGCGCTTTGCGGGG
TTTGCCGACGCGGTTGTGGGCATCGTGCGAATGGAGGGTTTTTGGGGCGG
ACTTTACGCCGGTACCGGTCCCACAGTGCTCAAGGGCGCGCTTAATAATT
GTATCCGCTTCTCGACTTATTCAGAATTAAAGCATCTCTATCAGCAATTC
AAAACCGGGGATATCATCATCAGCAGCAGCAGCAGCAGCAGTGCCACCAC
CACCGTCTTCGTGGAAAACTTGGCTCCTCTCAACGCGGCCGAGTCCATGC
TTTTAGGCGCAATTTCGGGAGGCTTGTCAGCAGTGGCAACACACCCCATA
GACACCGTGAAGTCCAACATGCAGTCGATAGGTGGGGGCGGCTACAGCAC
TTCCTGGGACTGCTTCACGAAGATCCTCCAGAGTCAGGGCCTGCTGGGCC
TGTACCGCGGCATGTCGCCCCGCTTTATTCGCGTTTGCCTTGAGATTGGT
CTTCACTTTACCATGTACGAACGTATTGCTCGATACTTGGACAGCATTTG
ATGCCAACTTAAGCAGCACTACCAACTCAAAAAATTTACGGGCCCCTTGG
ACTGCGTGCGCTACACTTTGCGGACAAAAGGCCCATTCGGATTGTACAAG
GGCTTGATGCCATGGCTGGTTTTTGCTTTCCCACGTTCCGCTGTGCGCTT
CTCTACCTACGAGTATGCCAGCCACGCGCTCCAGAACGGCTGGGGTCACA
ATGATGGGGGGGGGAAAAAAGACCCGCTCTTGACCATGACTGCCGGCACA
TTGGCGGGCGCCAGGATTGAAATCTGCATTACATTTCCATGCGAGTTCAC
AAAGACTCAGATGACTCCACGGACATCGACGCAACCAGATCCAGCACCGC
CTCCACGGCACGCGCTTACGCCCATATTGGCGGGTGGACTGGCAGGAT
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Synonyms
Publications