jgi.p|Nanoce1779_2|600655, mRNA_7951 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600655
Unique Name	mRNA_7951
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1945
Alignment location	scaffold_22:250404..252348 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600741
Track	FilteredModels2
ProteinId	600655

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:250404..252348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600655	gene_7951	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600655	mRNA_7951-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7951	CDS_7951	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:250404..252348+
coding sequence from alignment at scaffold_22:250404..252348+

mRNA sequence

>mRNA_7951 ID=mRNA_7951|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
TGCGCCAAGTCGGGAACCCATGCGGGAATCGGGTGGTTGAACTTTGATGA
TGCCGCTCTTCCCTGGAGTTGCATTAAAAATTGCACAACCGACAACCCCT
TTCGTAATAAGGGGAAGAGAAGGAAACGGACTTTGTCGTACATCTTAAAA
CTTTCACCTATAACCATGTTCAGAAAATTTGATTGAGCGGGTCATCGGGG
CTTTGCTTGCGCTCATGGCTTGCTCGAAAGCCAGGGCCATCATCTCAGTC
CCCGCGTGTGATCCCCTCGTCTCATGAAAAGCCTTCGCGAGCCACATAAT
CAAAAAAAAAAAAAAACTAGCTAAGGAACCATCATCCTCTCGGCCGCAGC
CAAAGCCGGCCTTAAGGCAACTCCGCACTCTTCCACGCTGCTGGGAGGCC
GCAGTTGTATGTAATATTTTTGTGGCCGGGCTGTTTCTCACATCCCCCAG
TGCTCCTGCAACAGCTGCGTTCATCCTCTCACTTTCATTTTCTTCCTCGT
TCCAACACCACAGACAATTCTTCTTGACATGAAGCCTTATATTGCGGGAA
GCGTCGCCACCATGACGACAGCCGTGATATTTTTGGCTGCTGCTCCCCAC
TTCGCGCTTGGTGAAGTGCAGCGCATCAAGCTGGCGCCCGGCCCGGCCGG
CATGGAAACCTCTCAGATGGGCTTGGGTGCCCTGCACTTTGCGGAGCTAA
CGCAGAGCGGCGGGGCTGCGGCGCTCAAGGACTTGCTGAATGTGGCTCTG
CAGAACAAGATCACTCTGCTGGACCTGGCCGACATATACGCCTACAATGC
GAGCGCCGAGTTGGTGGGGCAGGCGTTTGCCTTACAGCCAGGCCTGCGAG
AGAAGTTTCAGATTGTGTACAAGACGGGCATTGTCTTTCCGGACGCGCCC
GTCCAGTACCTGGACAATGGGGCTGAATACATGATGCACGCTGTCGACAT
TGCCCTGACCCAGCTTGGCACCACCTACCTCGACGTGCTCATGCCGCACG
CCCCGGACCCGCTCCTGGACGCGACCGAGCTAGCCATGACCTTCAAGAAG
CTCAAGGCTAGCGGCAAGGTCCGCTACTTTGGCGTGTCCAACTTTCCACC
AAGCAAACTTGCTTTGCTGCAAGCCGCTATGGAAAAACAGCAGATGAGCC
TGACGACGGCCGAACTTGAAATTTCTGTCCTGACCCCCACGGCCTTGTTC
GACGGCCGCCTCGACCAGCTCCAGGAGCTCGGCATTGCTGCCTTAGCCTG
GGGGCCTCTGGGCGGGGACCCGATGGCCGGTGCCAACCGTCTTTTTAATT
TCCCCGAGGGTGCCCGGCAAGGTCGTATTCTGGCGGCCCTCAAGGACGTG
GCCTCGCAGATGGGCCCGGCCGTCACACCCGACCAAGTGGCGATCGCATG
GCTGCTGCGGCACCCAACGCGCATCGTGCCAGTGATTGGGACGGTGAGGG
CAGACCGGCTGAAAGCCCAGGCGGCGGCCACGAACCTGAAGATGACGAGG
GCGCAGTGGACGCAGATCATGGGGGCCTCGGCCGTGGCGAACTTCAAGCG
GTGGGAGCAACTCAACGATGGGCAGTGGCATGACGTGGCCAACGACTCCC
CGAATACCTTCGGCTCGCCACTGGGTGTGGATGTGCCCGTCGGGTTTTGT
GACTTTGGGAGCTGCAAGGCGCCGATGGCATGAAGGAAGTGAAGAAAGTG
AAGGAGGGGATATTGTTGTACCTTTGATGTAATTGATATGCCATGACAAG
TTCTAATGAAGCACGAGCGACACGAGCAGATAAGAGGACGTGGCTGAGGG
CACAGGACAAAGACGACTGTGCGCTCTACCGTTGTCCTGCATGTGTCACC
TCTGGAGGCAGAGATAAAAAAATCTGCCATGCCGCACACACCGATGTCAT
CGAAAAAAGCGAGATAGCAAATTAAAGAATTAGTTTGTTTTTGTG

protein sequence of jgi.p|Nanoce1779_2|600655

>mRNA_7951-protein ID=mRNA_7951-protein|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MKPYIAGSVATMTTAVIFLAAAPHFALGEVQRIKLAPGPAGMETSQMGLG
ALHFAELTQSGGAAALKDLLNVALQNKITLLDLADIYAYNASAELVGQAF
ALQPGLREKFQIVYKTGIVFPDAPVQYLDNGAEYMMHAVDIALTQLGTTY
LDVLMPHAPDPLLDATELAMTFKKLKASGKVRYFGVSNFPPSKLALLQAA
MEKQQMSLTTAELEISVLTPTALFDGRLDQLQELGIAALAWGPLGGDPMA
GANRLFNFPEGARQGRILAALKDVASQMGPAVTPDQVAIAWLLRHPTRIV
PVIGTVRADRLKAQAAATNLKMTRAQWTQIMGASAVANFKRWEQLNDGQW
HDVANDSPNTFGSPLGVDVPVGFCDFGSCKAPMA*

mRNA from alignment at scaffold_22:250404..252348+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7951 ID=mRNA_7951|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_22:250404..252348+ (Nannochloropsis oceanica)
TGCGCCAAGTCGGGAACCCATGCGGGAATCGGGTGGTTGAACTTTGATGA
TGCCGCTCTTCCCTGGAGTTGCATTAAAAATTGCACAACCGACAACCCCT
TTCGTAATAAGGGGAAGAGAAGGAAACGGACTTTGTCGTACATCTTAAAA
CTTTCACCTATAACCATGTTCAGAAAATTTGATTGAGCGGGTCATCGGGG
CTTTGCTTGCGCTCATGGCTTGCTCGAAAGCCAGGGCCATCATCTCAGTC
CCCGCGTGTGATCCCCTCGTCTCATGAAAAGCCTTCGCGAGCCACATAAT
CAAAAAAAAAAAAAAACTAGCTAAGGAACCATCATCCTCTCGGCCGCAGC
CAAAGCCGGCCTTAAGGCAACTCCGCACTCTTCCACGCTGCTGGGAGGCC
GCAGTTGTATGTAATATTTTTGTGGCCGGGCTGTTTCTCACATCCCCCAG
TGCTCCTGCAACAGCTGCGTTCATCCTCTCACTTTCATTTTCTTCCTCGT
TCCAACACCACAGACAATTCTTCTTGACATGAAGCCTTATATTGCGGGAA
GCGTCGCCACCATGACGACAGCCGTGATATTTTTGGCTGCTGCTCCCCAC
TTCGCGCTTGGTGAAGTGCAGCGCATCAAGCTGGCGCCCGGCCCGGCCGG
CATGGAAACCTCTCAGATGGGCTTGGGTGCCCTGCACTTTGCGGAGCTAA
CGCAGAGCGGCGGGGCTGCGGCGCTCAAGGACTTGCTGAATGTGGCTCTG
CAGAACAAGATCACTCTGCTGGACCTGGCCGACATATACGCCTACAATGC
GAGCGCCGAGTTGGTGGGGCAGGCGTTTGCCTTACAGCCAGGCCTGCGAG
AGAAGTTTCAGATTGTGTACAAGACGGGCATTGTCTTTCCGGACGCGCCC
GTCCAGTACCTGGACAATGGGGCTGAATACATGATGCACGCTGTCGACAT
TGCCCTGACCCAGCTTGGCACCACCTACCTCGACGTGCTCATGCCGCACG
CCCCGGACCCGCTCCTGGACGCGACCGAGCTAGCCATGACCTTCAAGAAG
CTCAAGGCTAGCGGCAAGGTCCGCTACTTTGGCGTGTCCAACTTTCCACC
AAGCAAACTTGCTTTGCTGCAAGCCGCTATGGAAAAACAGCAGATGAGCC
TGACGACGGCCGAACTTGAAATTTCTGTCCTGACCCCCACGGCCTTGTTC
GACGGCCGCCTCGACCAGCTCCAGGAGCTCGGCATTGCTGCCTTAGCCTG
GGGGCCTCTGGGCGGGGACCCGATGGCCGGTGCCAACCGTCTTTTTAATT
TCCCCGAGGGTGCCCGGCAAGGTCGTATTCTGGCGGCCCTCAAGGACGTG
GCCTCGCAGATGGGCCCGGCCGTCACACCCGACCAAGTGGCGATCGCATG
GCTGCTGCGGCACCCAACGCGCATCGTGCCAGTGATTGGGACGGTGAGGG
CAGACCGGCTGAAAGCCCAGGCGGCGGCCACGAACCTGAAGATGACGAGG
GCGCAGTGGACGCAGATCATGGGGGCCTCGGCCGTGGCGAACTTCAAGCG
GTGGGAGCAACTCAACGATGGGCAGTGGCATGACGTGGCCAACGACTCCC
CGAATACCTTCGGCTCGCCACTGGGTGTGGATGTGCCCGTCGGGTTTTGT
GACTTTGGGAGCTGCAAGGCGCCGATGGCATGAAGGAAGTGAAGAAAGTG
AAGGAGGGGATATTGTTGTACCTTTGATGTAATTGATATGCCATGACAAG
TTCTAATGAAGCACGAGCGACACGAGCAGATAAGAGGACGTGGCTGAGGG
CACAGGACAAAGACGACTGTGCGCTCTACCGTTGTCCTGCATGTGTCACC
TCTGGAGGCAGAGATAAAAAAATCTGCCATGCCGCACACACCGATGTCAT
CGAAAAAAGCGAGATAGCAAATTAAAGAATTAGTTTGTTTTTGTG

Coding sequence (CDS) from alignment at scaffold_22:250404..252348+

>mRNA_7951 ID=mRNA_7951|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_22:250404..252348+ (Nannochloropsis oceanica)
ATGAAGCCTTATATTGCGGGAAGCGTCGCCACCATGACGACAGCCGTGAT
ATTTTTGGCTGCTGCTCCCCACTTCGCGCTTGGTGAAGTGCAGCGCATCA
AGCTGGCGCCCGGCCCGGCCGGCATGGAAACCTCTCAGATGGGCTTGGGT
GCCCTGCACTTTGCGGAGCTAACGCAGAGCGGCGGGGCTGCGGCGCTCAA
GGACTTGCTGAATGTGGCTCTGCAGAACAAGATCACTCTGCTGGACCTGG
CCGACATATACGCCTACAATGCGAGCGCCGAGTTGGTGGGGCAGGCGTTT
GCCTTACAGCCAGGCCTGCGAGAGAAGTTTCAGATTGTGTACAAGACGGG
CATTGTCTTTCCGGACGCGCCCGTCCAGTACCTGGACAATGGGGCTGAAT
ACATGATGCACGCTGTCGACATTGCCCTGACCCAGCTTGGCACCACCTAC
CTCGACGTGCTCATGCCGCACGCCCCGGACCCGCTCCTGGACGCGACCGA
GCTAGCCATGACCTTCAAGAAGCTCAAGGCTAGCGGCAAGGTCCGCTACT
TTGGCGTGTCCAACTTTCCACCAAGCAAACTTGCTTTGCTGCAAGCCGCT
ATGGAAAAACAGCAGATGAGCCTGACGACGGCCGAACTTGAAATTTCTGT
CCTGACCCCCACGGCCTTGTTCGACGGCCGCCTCGACCAGCTCCAGGAGC
TCGGCATTGCTGCCTTAGCCTGGGGGCCTCTGGGCGGGGACCCGATGGCC
GGTGCCAACCGTCTTTTTAATTTCCCCGAGGGTGCCCGGCAAGGTCGTAT
TCTGGCGGCCCTCAAGGACGTGGCCTCGCAGATGGGCCCGGCCGTCACAC
CCGACCAAGTGGCGATCGCATGGCTGCTGCGGCACCCAACGCGCATCGTG
CCAGTGATTGGGACGGTGAGGGCAGACCGGCTGAAAGCCCAGGCGGCGGC
CACGAACCTGAAGATGACGAGGGCGCAGTGGACGCAGATCATGGGGGCCT
CGGCCGTGGCGAACTTCAAGCGGTGGGAGCAACTCAACGATGGGCAGTGG
CATGACGTGGCCAACGACTCCCCGAATACCTTCGGCTCGCCACTGGGTGT
GGATGTGCCCGTCGGGTTTTGTGACTTTGGGAGCTGCAAGGCGCCGATGG
CATGA

Synonyms

Publications