jgi.p|Nanoce1779_2|177744, mRNA_7950 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|177744
Unique NamemRNA_7950
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_22:248923..250439 +

Link to JBrowse

Properties
Property NameValue
TranscriptId177830
TrackFilteredModels2
ProteinId177744
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:248923..250439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177744gene_7950Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177744mRNA_7950-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7950CDS_7950Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7950 ID=mRNA_7950|Name=jgi.p|Nanoce1779_2|177744|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
CTGAGCGGCCCAACACATATATACCACAAACCACACCTAGTGCGCAGATA
AAGCCTGCCAAAGGTTCTCAGGCAAAGGCTCGCGCCACGAGCAGAGCCTG
CGATTCTTTAGCCTCCCGCGCACCCTCCTCTCAAAATGGCCACCCCGTCC
TCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGCTTTGAGGGTCTACCG
TCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGGACAAGCAGGCGTCGG
CACTTGAGCAAATACGTCAGGGCTTTCGAGAGCATGCAGGCGAGACGGAC
GCGCAAAGGGTGAGCAAGCTGTTGGAGCAGGCTTCTTCTACGCTCGGGTA
TCTAAAGATGGTGACTCCAAAGCGAAGGATAGGTGCCACTGCAAACGCCT
CCTCGGGCGACGGCGGAGAAGGAAGAGCGACAGGGGGACGGACCTATCTG
GTGTACAAGGACGGCGAGGGGCGGGTAACGGAAGAGGCTGCGCGACGGGA
TAAATTGGCTTATTCCAACTGGGACGGCAGCAACATGGACCCCGACAATG
TTCGTCGGCACCAACACCAACTCAGCCGGATGGGGTTCCGGAATAACAGA
CATGCCAAGGGCGGCATCTTTTGATCATGTACTAGAGAAGGAAGAAGGAA
GGGTGGGAGGGAGTAGGAGAGAAAGAGGGGATGAGTGGAACACGTGTTGT
AAAAAGAATCAACATATAATTTAATAAAAGAGGGCGACGTTTCTCAGCTT
CTTCGACGGGCTTAAATCATTGCTCAAGGATGCACAGTGTGTCTACGGGT
TGGGATGCGCCAAGTCGGGAACCCATGCGGGAATCGGGTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|177744

>mRNA_7950-protein ID=mRNA_7950-protein|Name=jgi.p|Nanoce1779_2|177744|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MATPSSAAAVAASSTNALRVYRRLLGMAKNLPQDKQASALEQIRQGFREH
AGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATG
GRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMG
FRNNRHAKGGIF*
back to top

mRNA from alignment at scaffold_22:248923..250439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7950 ID=mRNA_7950|Name=jgi.p|Nanoce1779_2|177744|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at scaffold_22:248923..250439+ (Nannochloropsis oceanica)
CTGAGGTAAGGGTATTTGGGAGAGTGGAAAGCAATTTAAAGACGATTTGC
GGGGTAGGCAATGGCAAAGGCATATATGATGATGGTGAGGAAGAAGCTGG
CGATGAAGGCAAAGCAACGACGAGAGATAATTGACCCGCGGAAAAATCAC
CAAAGCGGCCCAACACATATATACCACAAACCACACCTAGTGCGCAGATA
AAGCCTGCCAAAGGTTCTCAGGCAAAGGCTCGCGCCACGAGCAGAGCCTG
CGATTCTTTAGCCTCCCGCGCACCCTCCTCTCAAAATGGCCACCCCGTCC
TCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGCTTTGAGGGTCTACCG
TCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGGACAAGCAGGCGTCGG
CACTTGAGCAAATACGTCAGGGCTTTCGAGAGCATGCAGGCGAGACGGAC
GCGCAAAGGTGAGTGAGTGTCGAAGGCCGGGGGAGGGGGACTATCAGGGG
ACAGACTCGGGCACAAGATGCCGGGGGACAATGCGACGGTAGTTTTCATT
CAGATACGGCAGTGGTATTTGTTGAAGGTACTAGTTAATCTCCCCTCTAT
ATGCGGGGGCTTACTACCACCGAGCTTCCCCCACAGATCCTTTTGTACGA
AGGTGAGAAACGGATCCATAAGGGTCGGTAGCTAGCTCAATCCTTCCTAG
CGCCGCGAGGATTAAGGAAGCTCGAATTCGTCGACGGGGACAGCGATTCA
CTTTTTGTTGTTTTTCCTAACTCACTCCAACGGTTTTGGCATCAAAATAA
GGGGAAGAATTCCTCAATTTTTATCACCATAAATGAGAGGACTGATAGCC
TCGAGGAGCTCCTACGACCACAAACGAATAGATATCTATCATTATGAGAA
AATAGAAGGCGCTCGAAAATATCTCTCGACTTTACGCATGCCTAAGACTA
CCTGCCTTCTTTCCTTCCCCCCCCCGGAAAACAGGGTGAGCAAGCTGTTG
GAGCAGGCTTCTTCTACGCTCGGGTATCTAAAGATGGTGACTCCAAAGCG
AAGGATAGGTGCCACTGCAAACGCCTCCTCGGGCGACGGCGGAGAAGGAA
GAGCGACAGGGGGACGGACCTATCTGGTGTACAAGGACGGCGAGGGGCGG
GTAACGGAAGAGGCTGCGCGACGGGATAAATTGGCTTATTCCAACTGGGA
CGGCAGCAACATGGACCCCGACAATGTTCGTCGGCACCAACACCAACTCA
GCCGGATGGGGTTCCGGAATAACAGACATGCCAAGGGCGGCATCTTTTGA
TCATGTACTAGAGAAGGAAGAAGGAAGGGTGGGAGGGAGTAGGAGAGAAA
GAGGGGATGAGTGGAACACGTGTTGTAAAAAGAATCAACATATAATTTAA
TAAAAGAGGGCGACGTTTCTCAGCTTCTTCGACGGGCTTAAATCATTGCT
CAAGGATGCACAGTGTGTCTACGGGTTGGGATGCGCCAAGTCGGGAACCC
ATGCGGGAATCGGGTGG
back to top

Coding sequence (CDS) from alignment at scaffold_22:248923..250439+

>mRNA_7950 ID=mRNA_7950|Name=jgi.p|Nanoce1779_2|177744|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_22:248923..250439+ (Nannochloropsis oceanica)
ATGGCCACCCCGTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGC
TTTGAGGGTCTACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGG
ACAAGCAGGCGTCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCAT
GCAGGCGAGACGGACGCGCAAAGGGTGAGCAAGCTGTTGGAGCAGGCTTC
TTCTACGCTCGGGTATCTAAAGATGGTGACTCCAAAGCGAAGGATAGGTG
CCACTGCAAACGCCTCCTCGGGCGACGGCGGAGAAGGAAGAGCGACAGGG
GGACGGACCTATCTGGTGTACAAGGACGGCGAGGGGCGGGTAACGGAAGA
GGCTGCGCGACGGGATAAATTGGCTTATTCCAACTGGGACGGCAGCAACA
TGGACCCCGACAATGTTCGTCGGCACCAACACCAACTCAGCCGGATGGGG
TTCCGGAATAACAGACATGCCAAGGGCGGCATCTTTTGAATGGCCACCCC
GTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGCTTTGAGGGTCT
ACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGGACAAGCAGGCG
TCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCATGCAGGCGAGAC
GGACGCGCAAAGGGTGAGCAAGCTGTTGGAGCAGGCTTCTTCTACGCTCG
GGTATCTAAAGATGGTGACTCCAAAGCGAAGGATAGGTGCCACTGCAAAC
GCCTCCTCGGGCGACGGCGGAGAAGGAAGAGCGACAGGGGGACGGACCTA
TCTGGTGTACAAGGACGGCGAGGGGCGGGTAACGGAAGAGGCTGCGCGAC
GGGATAAATTGGCTTATTCCAACTGGGACGGCAGCAACATGGACCCCGAC
AATGTTCGTCGGCACCAACACCAACTCAGCCGGATGGGGTTCCGGAATAA
CAGACATGCCAAGGGCGGCATCTTTTGA
back to top
Synonyms
Publications