jgi.p|Nanoce1779_2|536374, mRNA_795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|536374
Unique NamemRNA_795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1201
Alignment locationscaffold_2:453256..454456 -

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Properties
Property NameValue
TranscriptId536460
TrackFilteredModels2
ProteinId536374
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:453256..454456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536374gene_795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536374mRNA_795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_795CDS_795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_795 ID=mRNA_795|Name=jgi.p|Nanoce1779_2|536374|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
TCAGAACTTGCATTTTCCCCCCACATATCGTCATGCCATAGCTTGACGAG
TCGTTGCACGAGGATTTGGACGTATTTGACTGGTGCACGTGACACGCGAT
TGTTATAAAGAATCTTTGTTCTTCTATTTTCAGTCTCTTCAGCCACACCC
GCATCCCACACTCCTTCCCCACAGCTTCCTCACAAATAATATAGCAAACT
CTCTCCAAAATAATGGAGGAAGGCCGGTTTGATCCGCTTCTCCTCAACAT
TGCTCAGCAATGTCAAGGTATCGACGAACTGCTGGAGGTCTTCTTGTCGT
TTTTGCGGCGCAAGACTGATTTTTATACAGGCGCCACGGCCGACAAGGTG
GAGGAAACAGTGCGGTACGCCGTACGAAAGCAAATGGCCCTGGTGGAACG
CACCATGCAGGAGCAACGCCAAGCCCGCGAGGCTGAGGAGAAGCGGCGCC
AGGATCGCTTGCGTGCTACCAAGCTGAAGGAAGCGGAGGAGCAGAAGGCT
ATGAAGAATGCGGCAGCAACGACCTCTTCCTCCTCGTCTTTGGTGGAGGT
GGGATCGGACGGAACGTTTGATGTTTCTTCTTCTGCAGCAGCAGCGCCTA
TCGAGAAGAAGGCAAACTCCAAGAAGGCTGAGGACAACCCTGATAATGTG
AAGGAGGGAGAGGAGGCAGAAGTCAAGGAAGCTCCTCCGGGGAACGGCGG
GACCACGGAGCACTACGTCTGGACGCAGCAGCTGGCAGAGGTGACGGTAA
ATGTGCCCGTGCCAGTCGGAACGCGCTCTCGTGATTTGGTGGTGGACATC
GGGAAGAAACGTTTGCGGGTTGGGTTGAAAGGACAGCCTCCGATGGTGGA
TGGGGAGTTGCACAAGCCTGTGAAGGTGGATGATTCGTTTTGGACCGTTG
AGGATGGCCGGGAGGTGGTGGTGAATCTGCAGAAGGAGAACGGGATGGAG
TGGTGGAAGTGCGTAGTGGTGGGTGATCCTGAAATCGATACCAGTAAAGT
GAATCCTGAGAACTCCAAGTTGAGTGACCTGGACGCCGAGACGAGACAGA
CGGTGGAGAAGATGATGTTTGATCAGCGGCAGAAGCAGATGGGGCTCCCC
ACGTCGGAAGAGTTGAAGAAGAGGGAGATGCTGGAAAAATTTATGAAACA
ACACCCGGAGATGGATTTTAGTGGGGCGTCGATAAAGTGAGGGTGGCGGG
A
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protein sequence of jgi.p|Nanoce1779_2|536374

>mRNA_795-protein ID=mRNA_795-protein|Name=jgi.p|Nanoce1779_2|536374|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MEEGRFDPLLLNIAQQCQGIDELLEVFLSFLRRKTDFYTGATADKVEETV
RYAVRKQMALVERTMQEQRQAREAEEKRRQDRLRATKLKEAEEQKAMKNA
AATTSSSSSLVEVGSDGTFDVSSSAAAAPIEKKANSKKAEDNPDNVKEGE
EAEVKEAPPGNGGTTEHYVWTQQLAEVTVNVPVPVGTRSRDLVVDIGKKR
LRVGLKGQPPMVDGELHKPVKVDDSFWTVEDGREVVVNLQKENGMEWWKC
VVVGDPEIDTSKVNPENSKLSDLDAETRQTVEKMMFDQRQKQMGLPTSEE
LKKREMLEKFMKQHPEMDFSGASIK*
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mRNA from alignment at scaffold_2:453256..454456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_795 ID=mRNA_795|Name=jgi.p|Nanoce1779_2|536374|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at scaffold_2:453256..454456- (Nannochloropsis oceanica)
TCAGAACTTGCATTTTCCCCCCACATATCGTCATGCCATAGCTTGACGAG
TCGTTGCACGAGGATTTGGACGTATTTGACTGGTGCACGTGACACGCGAT
TGTTATAAAGAATCTTTGTTCTTCTATTTTCAGTCTCTTCAGCCACACCC
GCATCCCACACTCCTTCCCCACAGCTTCCTCACAAATAATATAGCAAACT
CTCTCCAAAATAATGGAGGAAGGCCGGTTTGATCCGCTTCTCCTCAACAT
TGCTCAGCAATGTCAAGGTATCGACGAACTGCTGGAGGTCTTCTTGTCGT
TTTTGCGGCGCAAGACTGATTTTTATACAGGCGCCACGGCCGACAAGGTG
GAGGAAACAGTGCGGTACGCCGTACGAAAGCAAATGGCCCTGGTGGAACG
CACCATGCAGGAGCAACGCCAAGCCCGCGAGGCTGAGGAGAAGCGGCGCC
AGGATCGCTTGCGTGCTACCAAGCTGAAGGAAGCGGAGGAGCAGAAGGCT
ATGAAGAATGCGGCAGCAACGACCTCTTCCTCCTCGTCTTTGGTGGAGGT
GGGATCGGACGGAACGTTTGATGTTTCTTCTTCTGCAGCAGCAGCGCCTA
TCGAGAAGAAGGCAAACTCCAAGAAGGCTGAGGACAACCCTGATAATGTG
AAGGAGGGAGAGGAGGCAGAAGTCAAGGAAGCTCCTCCGGGGAACGGCGG
GACCACGGAGCACTACGTCTGGACGCAGCAGCTGGCAGAGGTGACGGTAA
ATGTGCCCGTGCCAGTCGGAACGCGCTCTCGTGATTTGGTGGTGGACATC
GGGAAGAAACGTTTGCGGGTTGGGTTGAAAGGACAGCCTCCGATGGTGGA
TGGGGAGTTGCACAAGCCTGTGAAGGTGGATGATTCGTTTTGGACCGTTG
AGGATGGCCGGGAGGTGGTGGTGAATCTGCAGAAGGAGAACGGGATGGAG
TGGTGGAAGTGCGTAGTGGTGGGTGATCCTGAAATCGATACCAGTAAAGT
GAATCCTGAGAACTCCAAGTTGAGTGACCTGGACGCCGAGACGAGACAGA
CGGTGGAGAAGATGATGTTTGATCAGCGGCAGAAGCAGATGGGGCTCCCC
ACGTCGGAAGAGTTGAAGAAGAGGGAGATGCTGGAAAAATTTATGAAACA
ACACCCGGAGATGGATTTTAGTGGGGCGTCGATAAAGTGAGGGTGGCGGG
A
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Coding sequence (CDS) from alignment at scaffold_2:453256..454456-

>mRNA_795 ID=mRNA_795|Name=jgi.p|Nanoce1779_2|536374|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_2:453256..454456- (Nannochloropsis oceanica)
ATGGAGGAAGGCCGGTTTGATCCGCTTCTCCTCAACATTGCTCAGCAATG
TCAAGGTATCGACGAACTGCTGGAGGTCTTCTTGTCGTTTTTGCGGCGCA
AGACTGATTTTTATACAGGCGCCACGGCCGACAAGGTGGAGGAAACAGTG
CGGTACGCCGTACGAAAGCAAATGGCCCTGGTGGAACGCACCATGCAGGA
GCAACGCCAAGCCCGCGAGGCTGAGGAGAAGCGGCGCCAGGATCGCTTGC
GTGCTACCAAGCTGAAGGAAGCGGAGGAGCAGAAGGCTATGAAGAATGCG
GCAGCAACGACCTCTTCCTCCTCGTCTTTGGTGGAGGTGGGATCGGACGG
AACGTTTGATGTTTCTTCTTCTGCAGCAGCAGCGCCTATCGAGAAGAAGG
CAAACTCCAAGAAGGCTGAGGACAACCCTGATAATGTGAAGGAGGGAGAG
GAGGCAGAAGTCAAGGAAGCTCCTCCGGGGAACGGCGGGACCACGGAGCA
CTACGTCTGGACGCAGCAGCTGGCAGAGGTGACGGTAAATGTGCCCGTGC
CAGTCGGAACGCGCTCTCGTGATTTGGTGGTGGACATCGGGAAGAAACGT
TTGCGGGTTGGGTTGAAAGGACAGCCTCCGATGGTGGATGGGGAGTTGCA
CAAGCCTGTGAAGGTGGATGATTCGTTTTGGACCGTTGAGGATGGCCGGG
AGGTGGTGGTGAATCTGCAGAAGGAGAACGGGATGGAGTGGTGGAAGTGC
GTAGTGGTGGGTGATCCTGAAATCGATACCAGTAAAGTGAATCCTGAGAA
CTCCAAGTTGAGTGACCTGGACGCCGAGACGAGACAGACGGTGGAGAAGA
TGATGTTTGATCAGCGGCAGAAGCAGATGGGGCTCCCCACGTCGGAAGAG
TTGAAGAAGAGGGAGATGCTGGAAAAATTTATGAAACAACACCCGGAGAT
GGATTTTAGTGGGGCGTCGATAAAGTGA
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Synonyms
Publications