jgi.p|Nanoce1779_2|600645, mRNA_7946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600645
Unique NamemRNA_7946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1786
Alignment locationscaffold_22:243290..245075 -

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Properties
Property NameValue
TranscriptId600731
TrackFilteredModels2
ProteinId600645
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:243290..245075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600645gene_7946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600645mRNA_7946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7946CDS_7946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7946 ID=mRNA_7946|Name=jgi.p|Nanoce1779_2|600645|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
TGGTGGAAATGTGCGAACGCGGCCGCATCGACCTGTTGTGTTCGCTGCCG
TGGGCTCAGGGGGACGCGGAAGACGAGGTCTCGGAGGTCGAGATTTGCCT
GCGTTCTTCGGCGCGCTTCTCCACGATTGAGGAGGGCGAGGAGAGCGACG
AGGCGATGGATCTGGCTAGCGGTGGTGGGGGCGGGGACAATGTGGATTAT
TACAAGGCGGCCTTTGCCTATCTAGTCAGCCAAAGCAATTTCCGGATGGC
GGCGCTGGAGATGTACCGGCTGGCCAAGCGCTTGGAGGATGCCACAGTGT
ACGAGGACAACCTGGCCCGTCTGGACCGGAAGGTTGAGGCACTCGCCGCT
GTGCACAACTGCCTGTGTATGGTGCGGGATGCCGGTGAGTATCCATTTTT
GCTTTGGACCTACGATGACAAGTCCCGCCCCCCGTCGTCAGCCTTGAACT
CGACGCCAGCAGGCGCGGGGTCGAAAAAACAGTATGTGGTGACACTGAAG
CGGGTGGAGCAGGAACTGACCTATGCTTTGGCCGCGCGGCAATATTTACT
TGTGGCTGGACCCACTGCCTCGCCTTTGCGGGCCCTGAGCCTCTCCCAGG
CGCAGGCGCAGCCCGGTGCGGGTGAGGCCTGCGGCAAACTGAACAAGGCC
GCCGTGCATCAGGTGGAGGGCGCTGAGGCCTTGCTCTGCGGGTTGGGTCT
GTTCGAGTCTGCTGTGGCATTGGTCCGGGCATTTGGTCTGCCCATGCGCA
AAGTGGTGGCATCCTTGGCAAGAACGTTTGCGGTGCTAAGGGGTGGGCGG
ACTGATGCCCCCATGGTGTTGGAAGACGGCCCTCGGTGGAATCTGGGCGA
CCCTGATGAGATTCAAGACGGGGATAGCGACAAGGAAAGGTCGGCTCGGC
TGCAGGTATACATCCGCCTCACCAAGACGCTGGCAGAGGAGGGGAAGGGG
GCTAAATTGGTGGCGGAACATGCTGAGGCTGCTGGCTGGCTGCTGAAGGA
CCTAGTGCAGGGTTACGATTGGGGACATGCCTATGATCTGCATACTGAAG
CGGCACGTTACCTGTTGGCCTGCGATTCATTCTTGGAGCCTCCACGCTGG
CTTACTACAGCATTCACGCGCGGTGTGGACTCTCGCCTGGTAAAGACGCC
ACAAAGGAAAGACAAGGGTGGTAATAGTGATCAGACTAGAGCTTTAGGTG
CTTGGCTGGACACCGGCTCTTCTTTGTCACCCGTGACGCGCGTCCCTGTC
ACAAACAGCGGCGCATTTTTGCAGATGCTCGTGGACAAGGCCATGTACAT
TTTGCCTTCTCCCGGCGGCTCGAAGAGCAAGGTGGCGGGAGGTAGGCGGG
CGGCTGCAGTGGCCAGCCTTCCCTCCGAGACCGTGCTCAAAGAGAGTTTA
CACCTGCTGGTACGGGCCCTTCGCTACGGGGAAGAGGTGGTGGATACCGC
CACCAATCAGCTACTGACGGGCAGCCCCAATAAAGTCTGCCTTCCCCGAC
GCCCACTCCTCGCCCTGCTTCGGCGGACGCAAGAGGTCCTGGAGCTGCGA
GGGGGGACCGCGGTGGGCGACCTCGCGGCTCTTCAGCACCAGGCCGAATT
GGGCCTGAAGAACCTAAGAGATAGAAAGCTGCCCATCTTTGACATGCAGT
TGAGGGACAAGGAGCGAATGGTGGCCTTGATGCTTCAGCAGCCAAGGTAG
CGGATTCGGGGTTGGGGTTCGGTGGCAGCAATTTTAGAGGTCAAAAGTAG
ATCGGAACGAAAATCAAGTCGAAGGGTAAAAGCGTA
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protein sequence of jgi.p|Nanoce1779_2|600645

>mRNA_7946-protein ID=mRNA_7946-protein|Name=jgi.p|Nanoce1779_2|600645|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MCERGRIDLLCSLPWAQGDAEDEVSEVEICLRSSARFSTIEEGEESDEAM
DLASGGGGGDNVDYYKAAFAYLVSQSNFRMAALEMYRLAKRLEDATVYED
NLARLDRKVEALAAVHNCLCMVRDAGEYPFLLWTYDDKSRPPSSALNSTP
AGAGSKKQYVVTLKRVEQELTYALAARQYLLVAGPTASPLRALSLSQAQA
QPGAGEACGKLNKAAVHQVEGAEALLCGLGLFESAVALVRAFGLPMRKVV
ASLARTFAVLRGGRTDAPMVLEDGPRWNLGDPDEIQDGDSDKERSARLQV
YIRLTKTLAEEGKGAKLVAEHAEAAGWLLKDLVQGYDWGHAYDLHTEAAR
YLLACDSFLEPPRWLTTAFTRGVDSRLVKTPQRKDKGGNSDQTRALGAWL
DTGSSLSPVTRVPVTNSGAFLQMLVDKAMYILPSPGGSKSKVAGGRRAAA
VASLPSETVLKESLHLLVRALRYGEEVVDTATNQLLTGSPNKVCLPRRPL
LALLRRTQEVLELRGGTAVGDLAALQHQAELGLKNLRDRKLPIFDMQLRD
KERMVALMLQQPR*
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mRNA from alignment at scaffold_22:243290..245075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7946 ID=mRNA_7946|Name=jgi.p|Nanoce1779_2|600645|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at scaffold_22:243290..245075- (Nannochloropsis oceanica)
TGGTGGAAATGTGCGAACGCGGCCGCATCGACCTGTTGTGTTCGCTGCCG
TGGGCTCAGGGGGACGCGGAAGACGAGGTCTCGGAGGTCGAGATTTGCCT
GCGTTCTTCGGCGCGCTTCTCCACGATTGAGGAGGGCGAGGAGAGCGACG
AGGCGATGGATCTGGCTAGCGGTGGTGGGGGCGGGGACAATGTGGATTAT
TACAAGGCGGCCTTTGCCTATCTAGTCAGCCAAAGCAATTTCCGGATGGC
GGCGCTGGAGATGTACCGGCTGGCCAAGCGCTTGGAGGATGCCACAGTGT
ACGAGGACAACCTGGCCCGTCTGGACCGGAAGGTTGAGGCACTCGCCGCT
GTGCACAACTGCCTGTGTATGGTGCGGGATGCCGGTGAGTATCCATTTTT
GCTTTGGACCTACGATGACAAGTCCCGCCCCCCGTCGTCAGCCTTGAACT
CGACGCCAGCAGGCGCGGGGTCGAAAAAACAGTATGTGGTGACACTGAAG
CGGGTGGAGCAGGAACTGACCTATGCTTTGGCCGCGCGGCAATATTTACT
TGTGGCTGGACCCACTGCCTCGCCTTTGCGGGCCCTGAGCCTCTCCCAGG
CGCAGGCGCAGCCCGGTGCGGGTGAGGCCTGCGGCAAACTGAACAAGGCC
GCCGTGCATCAGGTGGAGGGCGCTGAGGCCTTGCTCTGCGGGTTGGGTCT
GTTCGAGTCTGCTGTGGCATTGGTCCGGGCATTTGGTCTGCCCATGCGCA
AAGTGGTGGCATCCTTGGCAAGAACGTTTGCGGTGCTAAGGGGTGGGCGG
ACTGATGCCCCCATGGTGTTGGAAGACGGCCCTCGGTGGAATCTGGGCGA
CCCTGATGAGATTCAAGACGGGGATAGCGACAAGGAAAGGTCGGCTCGGC
TGCAGGTATACATCCGCCTCACCAAGACGCTGGCAGAGGAGGGGAAGGGG
GCTAAATTGGTGGCGGAACATGCTGAGGCTGCTGGCTGGCTGCTGAAGGA
CCTAGTGCAGGGTTACGATTGGGGACATGCCTATGATCTGCATACTGAAG
CGGCACGTTACCTGTTGGCCTGCGATTCATTCTTGGAGCCTCCACGCTGG
CTTACTACAGCATTCACGCGCGGTGTGGACTCTCGCCTGGTAAAGACGCC
ACAAAGGAAAGACAAGGGTGGTAATAGTGATCAGACTAGAGCTTTAGGTG
CTTGGCTGGACACCGGCTCTTCTTTGTCACCCGTGACGCGCGTCCCTGTC
ACAAACAGCGGCGCATTTTTGCAGATGCTCGTGGACAAGGCCATGTACAT
TTTGCCTTCTCCCGGCGGCTCGAAGAGCAAGGTGGCGGGAGGTAGGCGGG
CGGCTGCAGTGGCCAGCCTTCCCTCCGAGACCGTGCTCAAAGAGAGTTTA
CACCTGCTGGTACGGGCCCTTCGCTACGGGGAAGAGGTGGTGGATACCGC
CACCAATCAGCTACTGACGGGCAGCCCCAATAAAGTCTGCCTTCCCCGAC
GCCCACTCCTCGCCCTGCTTCGGCGGACGCAAGAGGTCCTGGAGCTGCGA
GGGGGGACCGCGGTGGGCGACCTCGCGGCTCTTCAGCACCAGGCCGAATT
GGGCCTGAAGAACCTAAGAGATAGAAAGCTGCCCATCTTTGACATGCAGT
TGAGGGACAAGGAGCGAATGGTGGCCTTGATGCTTCAGCAGCCAAGGTAG
CGGATTCGGGGTTGGGGTTCGGTGGCAGCAATTTTAGAGGTCAAAAGTAG
ATCGGAACGAAAATCAAGTCGAAGGGTAAAAGCGTA
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Coding sequence (CDS) from alignment at scaffold_22:243290..245075-

>mRNA_7946 ID=mRNA_7946|Name=jgi.p|Nanoce1779_2|600645|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_22:243290..245075- (Nannochloropsis oceanica)
ATGTGCGAACGCGGCCGCATCGACCTGTTGTGTTCGCTGCCGTGGGCTCA
GGGGGACGCGGAAGACGAGGTCTCGGAGGTCGAGATTTGCCTGCGTTCTT
CGGCGCGCTTCTCCACGATTGAGGAGGGCGAGGAGAGCGACGAGGCGATG
GATCTGGCTAGCGGTGGTGGGGGCGGGGACAATGTGGATTATTACAAGGC
GGCCTTTGCCTATCTAGTCAGCCAAAGCAATTTCCGGATGGCGGCGCTGG
AGATGTACCGGCTGGCCAAGCGCTTGGAGGATGCCACAGTGTACGAGGAC
AACCTGGCCCGTCTGGACCGGAAGGTTGAGGCACTCGCCGCTGTGCACAA
CTGCCTGTGTATGGTGCGGGATGCCGGTGAGTATCCATTTTTGCTTTGGA
CCTACGATGACAAGTCCCGCCCCCCGTCGTCAGCCTTGAACTCGACGCCA
GCAGGCGCGGGGTCGAAAAAACAGTATGTGGTGACACTGAAGCGGGTGGA
GCAGGAACTGACCTATGCTTTGGCCGCGCGGCAATATTTACTTGTGGCTG
GACCCACTGCCTCGCCTTTGCGGGCCCTGAGCCTCTCCCAGGCGCAGGCG
CAGCCCGGTGCGGGTGAGGCCTGCGGCAAACTGAACAAGGCCGCCGTGCA
TCAGGTGGAGGGCGCTGAGGCCTTGCTCTGCGGGTTGGGTCTGTTCGAGT
CTGCTGTGGCATTGGTCCGGGCATTTGGTCTGCCCATGCGCAAAGTGGTG
GCATCCTTGGCAAGAACGTTTGCGGTGCTAAGGGGTGGGCGGACTGATGC
CCCCATGGTGTTGGAAGACGGCCCTCGGTGGAATCTGGGCGACCCTGATG
AGATTCAAGACGGGGATAGCGACAAGGAAAGGTCGGCTCGGCTGCAGGTA
TACATCCGCCTCACCAAGACGCTGGCAGAGGAGGGGAAGGGGGCTAAATT
GGTGGCGGAACATGCTGAGGCTGCTGGCTGGCTGCTGAAGGACCTAGTGC
AGGGTTACGATTGGGGACATGCCTATGATCTGCATACTGAAGCGGCACGT
TACCTGTTGGCCTGCGATTCATTCTTGGAGCCTCCACGCTGGCTTACTAC
AGCATTCACGCGCGGTGTGGACTCTCGCCTGGTAAAGACGCCACAAAGGA
AAGACAAGGGTGGTAATAGTGATCAGACTAGAGCTTTAGGTGCTTGGCTG
GACACCGGCTCTTCTTTGTCACCCGTGACGCGCGTCCCTGTCACAAACAG
CGGCGCATTTTTGCAGATGCTCGTGGACAAGGCCATGTACATTTTGCCTT
CTCCCGGCGGCTCGAAGAGCAAGGTGGCGGGAGGTAGGCGGGCGGCTGCA
GTGGCCAGCCTTCCCTCCGAGACCGTGCTCAAAGAGAGTTTACACCTGCT
GGTACGGGCCCTTCGCTACGGGGAAGAGGTGGTGGATACCGCCACCAATC
AGCTACTGACGGGCAGCCCCAATAAAGTCTGCCTTCCCCGACGCCCACTC
CTCGCCCTGCTTCGGCGGACGCAAGAGGTCCTGGAGCTGCGAGGGGGGAC
CGCGGTGGGCGACCTCGCGGCTCTTCAGCACCAGGCCGAATTGGGCCTGA
AGAACCTAAGAGATAGAAAGCTGCCCATCTTTGACATGCAGTTGAGGGAC
AAGGAGCGAATGGTGGCCTTGATGCTTCAGCAGCCAAGGTAG
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Synonyms
Publications