jgi.p|Nanoce1779_2|600644, mRNA_7945 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600644
Unique Name	mRNA_7945
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2104
Alignment location	scaffold_22:241186..243289 +

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Properties


Property Name	Value
TranscriptId	600730
Track	FilteredModels2
ProteinId	600644

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:241186..243289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600644	gene_7945	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600644	mRNA_7945-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7945	CDS_7945	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:241186..243289+
coding sequence from alignment at scaffold_22:241186..243289+

mRNA sequence

>mRNA_7945 ID=mRNA_7945|Name=jgi.p|Nanoce1779_2|600644|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp
ACAGGCAAACAAATATGGGCATAACTTCGCTTTTACGATTCGGCAAGGGC
GATGCGCCAGCTATAGTCCAGACGAAGCAAGGCAAGGTGGAAGGAGTGAA
GAGGGGGGACACCAAGGTATACGTCTTCCGTGGCATTCCCTTTGCTACTC
CACCAGTAGGAGCTCTACGTTTCAAGAAGTCTGTGCCACACCCAGGTTGG
GAGGGTGTCAGGGCATGCAAGGAATTTGGCAAGACGGCCGTGCAGAACCT
GAGCATTGTGGTGCTGGTCTTTTTGCCCAAATTCGTGGCCGCACTGGTGT
GGGGTGGGCTATGGCTGACAGGCTCCAACCCTGTCGACAATTACCACCCT
AAGAGGCCCATGTCGCTGCCAGGGACCTGCTCGGAGGCCGACTGTCTGAA
CTTGAATGTAGAATCGCCAATGCTACCAGGAGACGAGAGCGACCAAAACA
ACGGCAACGGTCCCGCGCCAAAAAAGATGGCAAAGGGACTGCTCCCGGTC
ATGGTTTGGATACATGGGGGTGCCTTTCAGCTGGGTGCTAGTTCTCAGTA
CCTATACCAGCCTACCGAATCCTTTTTGGCGCGGCAGAATGTGGTGGTGG
TCAGCATCAACTACCGCCTGGGCGTGCTGGGATTTTGCAAGGTAGAAGGT
GGTGACTATAACTGCGGCATGTGGGATCAGGTGGCGGCGTTGCGATGGGT
GCAGGAGAACATTGCGGCATTTGGAGGCGATCCGAACAACGTGACCATCT
TTGGGGAATCGGCGGGCGGCATGAGCTGCGGTTTCCTTTCGGCTACCAAG
TTTGCTGGCCAGCTCTTCCACCGCGTCGTGTTGCAGTCGGGGACCATGCA
GACTGGTCTAACGCGAGACGAGGCTGGTTGGCTGGCAGAGGAAACGGCGC
GGGCATTGGAGATTCCGAGTTGCTCCCTGGCCACAATGGGCAGCACGTCC
GCGGCCGCGCTTCTGGCGGCGCAAAACCTGGTTATCCGAGGCAACAGATG
TGGTGGCATGCCCTACCAGCCCGTGGTGGACGGCGACCTGCTTGAGGATC
GCATCGTCAGTCGCTGGAAGGCAGGCTCGGCCAAGGATTTGGACTTTCTG
ATTTCCTACACGCGGCACGAGGAATTGCTCTTTTTGAAGATTTTTAACAA
AAAGTATGTGTCGGACTCAGAGGAAAAATTGTTAAAACGAATCACTTTCA
ACCTGAGCCCGCCTGTCATGGATGTGCCTGAGTATCAGACCGCGGCTCAG
CTGGCCCTGGACGAGATCAAGGCCTGGGAGGGCGGGGCCACGCCACCTAC
ACATGCCGACTATTGGACATACAAGGCCATTGATTTTTGCTCGATGCTCA
AATTTGCAATTCCGAGCCATTTCGCAGCCAACACGCTGGTGAAGGCACCT
GGCCGTTCCAAGTCCGTCTACTTGTGCCGCTTCGATGTACACTCCCCGCT
CATGAACGGCGCCTGTCACGCTATCGACCTGCCGTACGTATTCGGGGGGG
TCAAGGCCATGTCAGGCGCCATGTGTCCCGCAGATGTTCGCGCGAACGAG
GAATTGAGTTGTGCCGTAACTCGGGCATGGGCCAATTTCGCTAAGACGGG
AGACCCCAATACATGCAGTGAAGACAAGAAAGATGATCTTCATGTGCTCC
CGATATGGCCCGTCCTGTCCCCCGCGGAGGCCCATCAGACCATGATTTTG
GACGTTCCTTTGTCTTCTTGTCGCATCCAGGAAGTGGCGCTGCACCAAGT
CTTTCCGGAGCTCTGGAAGATGACAGTCGAAAATGCCCGCGCCCTTTGGT
TCCACCGCCCGCCACCTTCAGGCTCCGACACGGAAAAGACTATTCAGTCC
AACCTTTGAATGCGCGAGAAGAATGCAAGCAGTATAACGCTTTCAAATGT
TTTGCTATATTACGCAATGTTATTATATCGGTAAACAAGTGAACTGGCAG
CTGCGTGATTAAAGCAAAGGTTAAAATGAAAAATTAGGTCCTTATCAAAA
TTGAAATTAAACGTTAACACACAGCATGTACATCGACAGAAATTAGGGGT
GAAGCTTTCTGACGCGCATCTCCATAAAATATAGCAATGGAACACCTTGC
GAGA

protein sequence of jgi.p|Nanoce1779_2|600644

>mRNA_7945-protein ID=mRNA_7945-protein|Name=jgi.p|Nanoce1779_2|600644|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MGITSLLRFGKGDAPAIVQTKQGKVEGVKRGDTKVYVFRGIPFATPPVGA
LRFKKSVPHPGWEGVRACKEFGKTAVQNLSIVVLVFLPKFVAALVWGGLW
LTGSNPVDNYHPKRPMSLPGTCSEADCLNLNVESPMLPGDESDQNNGNGP
APKKMAKGLLPVMVWIHGGAFQLGASSQYLYQPTESFLARQNVVVVSINY
RLGVLGFCKVEGGDYNCGMWDQVAALRWVQENIAAFGGDPNNVTIFGESA
GGMSCGFLSATKFAGQLFHRVVLQSGTMQTGLTRDEAGWLAEETARALEI
PSCSLATMGSTSAAALLAAQNLVIRGNRCGGMPYQPVVDGDLLEDRIVSR
WKAGSAKDLDFLISYTRHEELLFLKIFNKKYVSDSEEKLLKRITFNLSPP
VMDVPEYQTAAQLALDEIKAWEGGATPPTHADYWTYKAIDFCSMLKFAIP
SHFAANTLVKAPGRSKSVYLCRFDVHSPLMNGACHAIDLPYVFGGVKAMS
GAMCPADVRANEELSCAVTRAWANFAKTGDPNTCSEDKKDDLHVLPIWPV
LSPAEAHQTMILDVPLSSCRIQEVALHQVFPELWKMTVENARALWFHRPP
PSGSDTEKTIQSNL*

mRNA from alignment at scaffold_22:241186..243289+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7945 ID=mRNA_7945|Name=jgi.p|Nanoce1779_2|600644|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp|location=Sequence derived from alignment at scaffold_22:241186..243289+ (Nannochloropsis oceanica)
ACAGGCAAACAAATATGGGCATAACTTCGCTTTTACGATTCGGCAAGGGC
GATGCGCCAGCTATAGTCCAGACGAAGCAAGGCAAGGTGGAAGGAGTGAA
GAGGGGGGACACCAAGGTATACGTCTTCCGTGGCATTCCCTTTGCTACTC
CACCAGTAGGAGCTCTACGTTTCAAGAAGTCTGTGCCACACCCAGGTTGG
GAGGGTGTCAGGGCATGCAAGGAATTTGGCAAGACGGCCGTGCAGAACCT
GAGCATTGTGGTGCTGGTCTTTTTGCCCAAATTCGTGGCCGCACTGGTGT
GGGGTGGGCTATGGCTGACAGGCTCCAACCCTGTCGACAATTACCACCCT
AAGAGGCCCATGTCGCTGCCAGGGACCTGCTCGGAGGCCGACTGTCTGAA
CTTGAATGTAGAATCGCCAATGCTACCAGGAGACGAGAGCGACCAAAACA
ACGGCAACGGTCCCGCGCCAAAAAAGATGGCAAAGGGACTGCTCCCGGTC
ATGGTTTGGATACATGGGGGTGCCTTTCAGCTGGGTGCTAGTTCTCAGTA
CCTATACCAGCCTACCGAATCCTTTTTGGCGCGGCAGAATGTGGTGGTGG
TCAGCATCAACTACCGCCTGGGCGTGCTGGGATTTTGCAAGGTAGAAGGT
GGTGACTATAACTGCGGCATGTGGGATCAGGTGGCGGCGTTGCGATGGGT
GCAGGAGAACATTGCGGCATTTGGAGGCGATCCGAACAACGTGACCATCT
TTGGGGAATCGGCGGGCGGCATGAGCTGCGGTTTCCTTTCGGCTACCAAG
TTTGCTGGCCAGCTCTTCCACCGCGTCGTGTTGCAGTCGGGGACCATGCA
GACTGGTCTAACGCGAGACGAGGCTGGTTGGCTGGCAGAGGAAACGGCGC
GGGCATTGGAGATTCCGAGTTGCTCCCTGGCCACAATGGGCAGCACGTCC
GCGGCCGCGCTTCTGGCGGCGCAAAACCTGGTTATCCGAGGCAACAGATG
TGGTGGCATGCCCTACCAGCCCGTGGTGGACGGCGACCTGCTTGAGGATC
GCATCGTCAGTCGCTGGAAGGCAGGCTCGGCCAAGGATTTGGACTTTCTG
ATTTCCTACACGCGGCACGAGGAATTGCTCTTTTTGAAGATTTTTAACAA
AAAGTATGTGTCGGACTCAGAGGAAAAATTGTTAAAACGAATCACTTTCA
ACCTGAGCCCGCCTGTCATGGATGTGCCTGAGTATCAGACCGCGGCTCAG
CTGGCCCTGGACGAGATCAAGGCCTGGGAGGGCGGGGCCACGCCACCTAC
ACATGCCGACTATTGGACATACAAGGCCATTGATTTTTGCTCGATGCTCA
AATTTGCAATTCCGAGCCATTTCGCAGCCAACACGCTGGTGAAGGCACCT
GGCCGTTCCAAGTCCGTCTACTTGTGCCGCTTCGATGTACACTCCCCGCT
CATGAACGGCGCCTGTCACGCTATCGACCTGCCGTACGTATTCGGGGGGG
TCAAGGCCATGTCAGGCGCCATGTGTCCCGCAGATGTTCGCGCGAACGAG
GAATTGAGTTGTGCCGTAACTCGGGCATGGGCCAATTTCGCTAAGACGGG
AGACCCCAATACATGCAGTGAAGACAAGAAAGATGATCTTCATGTGCTCC
CGATATGGCCCGTCCTGTCCCCCGCGGAGGCCCATCAGACCATGATTTTG
GACGTTCCTTTGTCTTCTTGTCGCATCCAGGAAGTGGCGCTGCACCAAGT
CTTTCCGGAGCTCTGGAAGATGACAGTCGAAAATGCCCGCGCCCTTTGGT
TCCACCGCCCGCCACCTTCAGGCTCCGACACGGAAAAGACTATTCAGTCC
AACCTTTGAATGCGCGAGAAGAATGCAAGCAGTATAACGCTTTCAAATGT
TTTGCTATATTACGCAATGTTATTATATCGGTAAACAAGTGAACTGGCAG
CTGCGTGATTAAAGCAAAGGTTAAAATGAAAAATTAGGTCCTTATCAAAA
TTGAAATTAAACGTTAACACACAGCATGTACATCGACAGAAATTAGGGGT
GAAGCTTTCTGACGCGCATCTCCATAAAATATAGCAATGGAACACCTTGC
GAGA

Coding sequence (CDS) from alignment at scaffold_22:241186..243289+

>mRNA_7945 ID=mRNA_7945|Name=jgi.p|Nanoce1779_2|600644|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at scaffold_22:241186..243289+ (Nannochloropsis oceanica)
ATGGGCATAACTTCGCTTTTACGATTCGGCAAGGGCGATGCGCCAGCTAT
AGTCCAGACGAAGCAAGGCAAGGTGGAAGGAGTGAAGAGGGGGGACACCA
AGGTATACGTCTTCCGTGGCATTCCCTTTGCTACTCCACCAGTAGGAGCT
CTACGTTTCAAGAAGTCTGTGCCACACCCAGGTTGGGAGGGTGTCAGGGC
ATGCAAGGAATTTGGCAAGACGGCCGTGCAGAACCTGAGCATTGTGGTGC
TGGTCTTTTTGCCCAAATTCGTGGCCGCACTGGTGTGGGGTGGGCTATGG
CTGACAGGCTCCAACCCTGTCGACAATTACCACCCTAAGAGGCCCATGTC
GCTGCCAGGGACCTGCTCGGAGGCCGACTGTCTGAACTTGAATGTAGAAT
CGCCAATGCTACCAGGAGACGAGAGCGACCAAAACAACGGCAACGGTCCC
GCGCCAAAAAAGATGGCAAAGGGACTGCTCCCGGTCATGGTTTGGATACA
TGGGGGTGCCTTTCAGCTGGGTGCTAGTTCTCAGTACCTATACCAGCCTA
CCGAATCCTTTTTGGCGCGGCAGAATGTGGTGGTGGTCAGCATCAACTAC
CGCCTGGGCGTGCTGGGATTTTGCAAGGTAGAAGGTGGTGACTATAACTG
CGGCATGTGGGATCAGGTGGCGGCGTTGCGATGGGTGCAGGAGAACATTG
CGGCATTTGGAGGCGATCCGAACAACGTGACCATCTTTGGGGAATCGGCG
GGCGGCATGAGCTGCGGTTTCCTTTCGGCTACCAAGTTTGCTGGCCAGCT
CTTCCACCGCGTCGTGTTGCAGTCGGGGACCATGCAGACTGGTCTAACGC
GAGACGAGGCTGGTTGGCTGGCAGAGGAAACGGCGCGGGCATTGGAGATT
CCGAGTTGCTCCCTGGCCACAATGGGCAGCACGTCCGCGGCCGCGCTTCT
GGCGGCGCAAAACCTGGTTATCCGAGGCAACAGATGTGGTGGCATGCCCT
ACCAGCCCGTGGTGGACGGCGACCTGCTTGAGGATCGCATCGTCAGTCGC
TGGAAGGCAGGCTCGGCCAAGGATTTGGACTTTCTGATTTCCTACACGCG
GCACGAGGAATTGCTCTTTTTGAAGATTTTTAACAAAAAGTATGTGTCGG
ACTCAGAGGAAAAATTGTTAAAACGAATCACTTTCAACCTGAGCCCGCCT
GTCATGGATGTGCCTGAGTATCAGACCGCGGCTCAGCTGGCCCTGGACGA
GATCAAGGCCTGGGAGGGCGGGGCCACGCCACCTACACATGCCGACTATT
GGACATACAAGGCCATTGATTTTTGCTCGATGCTCAAATTTGCAATTCCG
AGCCATTTCGCAGCCAACACGCTGGTGAAGGCACCTGGCCGTTCCAAGTC
CGTCTACTTGTGCCGCTTCGATGTACACTCCCCGCTCATGAACGGCGCCT
GTCACGCTATCGACCTGCCGTACGTATTCGGGGGGGTCAAGGCCATGTCA
GGCGCCATGTGTCCCGCAGATGTTCGCGCGAACGAGGAATTGAGTTGTGC
CGTAACTCGGGCATGGGCCAATTTCGCTAAGACGGGAGACCCCAATACAT
GCAGTGAAGACAAGAAAGATGATCTTCATGTGCTCCCGATATGGCCCGTC
CTGTCCCCCGCGGAGGCCCATCAGACCATGATTTTGGACGTTCCTTTGTC
TTCTTGTCGCATCCAGGAAGTGGCGCTGCACCAAGTCTTTCCGGAGCTCT
GGAAGATGACAGTCGAAAATGCCCGCGCCCTTTGGTTCCACCGCCCGCCA
CCTTCAGGCTCCGACACGGAAAAGACTATTCAGTCCAACCTTTGA

Synonyms

Publications