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Properties
| Property Name | Value |
|---|
| TranscriptId | 600723 |
| Track | FilteredModels2 |
| ProteinId | 600637 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:238263..240496 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7944 ID=mRNA_7944|Name=jgi.p|Nanoce1779_2|600637|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp
ACAGCATGCCCAGGCGGCCTGTGCTTGACATGGCCTTGGGTCTCTTGTGC
CTCGCAAGCAAGACCCATGCGCAGGTACAGTCGGCTGGTTTTGTGCTAGC
TAGTGGTTTCGGCATCAATTCGCATTCCCTTTCGATCGAAAAAGTGCTGG
CCACAGAGGATATAATCAGCGCGTTGGCAAAGCATTACGTGCGTTTGATT
CCACCGCCGCCCACGCAATCCGCCTATTTGTCCCATGACCTTGAGTTCCA
GCAAATCAGTCTCGACTCTCCTGTATCTGAGGCGACCATCTCTCCAGATT
GGTGCGTTGCGCCTGGGGAGGCGTACAAGTATACCTCGGAGAAGGGGTCT
GTCATGCTGAACGGGCACCCGCTTTACCTGAAGGGTTTGAATTGGTATGG
CTTCGAAGGCGATTTGTATGTTCTGGACGGGCTGGCCGCGTGGTCGATCG
AGCACTTCATGCTCTTTCTGGCGACGCACCACTTCAACGCTATACGCCTG
CCCTTTAGTCTGGAGTGGATTGCACGTGGTTTGGATGCACCACTCATGAA
TATTTATGTCGTGCAAGAAGATATTCGGAAGCTGACGCAGGGCCAGGTAC
TGGAGCGGATCTTCGACGCAGCAGCCGCTCAGGGCATTGTGATTCTGCTA
GACCTGCATGTGATCCAGGTTAAGGAGGGGATCAAGGACCTTTGGTACGA
CAACACGGCCAGCCCCGAACGCGTCATCGATCTGTGGACCACGATGCTGG
AGCGCTTTGCGGGGCGATGGAATCTATTGGGGATCGACTTAAAGAACGAG
CCCCACGGTATCGCCACCTGGGGCAAGGGCCACCCCAAGACGGACTGGAA
CACCTTCGTCACGCACGCCATTCAAACTCTGGCTACGCGCGTGCCTTTCT
TCCAGGGCGTGTTCTTCGTAGAGGGTGTGGAGGGCAACCACTGGAACAGC
AAGTACCATAGCTGGTGGGGAGGGAACTTGGACGGTGTTCGACGCTATCC
TATCGCCACGGGCAACGAGGCGCTCGACAAACGCGTAGTTTTTTCGCCGC
ACATATACGGGCCTGAGGTATTTTCTGGCCACACTTTTTTTCGAGACCCA
CGCTTTCCCGAGAACATGATGGGCATCTGGAATGCGCAGTTCGGCTGGAT
CGAGAAGACGACGGGCCGTGCAATGGTGCTGGGCGAGTGGGGTGGTACCA
TCGCGGGGGACAGTAAGGCGGCTGCCAACCAGCAGAAGCTGGCCGAGTGG
CTTGTCAAGGCATGTGTTCCCGACAATTTTTGGTGGTGTCTTAACCCGGC
CACCCAGTTCAATGGAAGCTTGTTGGGCAAGACGTACCAAACGGCAAACG
AGAACGTGTTGCGCATCCTCGACTTCGTGCAGCCCCAACCCACACGCTTC
CATCACGACATCGCCGAGGGCGGGTCCTTGTGCGTTGTGGACGGCGCCTT
CGCCAATACCCGTTGCACCGTTAGACTGGGCCTGAACATGAACTCGAGTC
AGGCAGCCCTGAAGGCTGAGAAGGAGTATCAGCATAAGTATTTTGGTGCG
GGCTAGGGAAAAAAAGGTAAACAAGGAAGTGTAAATTTGCAGGAAGGGCA
ATAAGCGAACAGATCAAGTGCGTGAAAGAGGTAAAAAGGGTAGAAGAAGT
TCCTTCAGTGCTTTGAAAGTACCATTTGATTGGTACTTTCTTGCATGTAT
GAGTAAAATATGTTGTAAAAATGTTGAAATTCTTCAAATTGCAAAGATTT
AAGTAAAAATTGTAGTAGCGTGAGCAC back to topprotein sequence of jgi.p|Nanoce1779_2|600637 >mRNA_7944-protein ID=mRNA_7944-protein|Name=jgi.p|Nanoce1779_2|600637|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MPRRPVLDMALGLLCLASKTHAQVQSAGFVLASGFGINSHSLSIEKVLAT
EDIISALAKHYVRLIPPPPTQSAYLSHDLEFQQISLDSPVSEATISPDWC
VAPGEAYKYTSEKGSVMLNGHPLYLKGLNWYGFEGDLYVLDGLAAWSIEH
FMLFLATHHFNAIRLPFSLEWIARGLDAPLMNIYVVQEDIRKLTQGQVLE
RIFDAAAAQGIVILLDLHVIQVKEGIKDLWYDNTASPERVIDLWTTMLER
FAGRWNLLGIDLKNEPHGIATWGKGHPKTDWNTFVTHAIQTLATRVPFFQ
GVFFVEGVEGNHWNSKYHSWWGGNLDGVRRYPIATGNEALDKRVVFSPHI
YGPEVFSGHTFFRDPRFPENMMGIWNAQFGWIEKTTGRAMVLGEWGGTIA
GDSKAAANQQKLAEWLVKACVPDNFWWCLNPATQFNGSLLGKTYQTANEN
VLRILDFVQPQPTRFHHDIAEGGSLCVVDGAFANTRCTVRLGLNMNSSQA
ALKAEKEYQHKYFGAG* back to topmRNA from alignment at scaffold_22:238263..240496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7944 ID=mRNA_7944|Name=jgi.p|Nanoce1779_2|600637|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp|location=Sequence derived from alignment at scaffold_22:238263..240496- (Nannochloropsis oceanica)
ACAGCATGCCCAGGCGGCCTGTGCTTGACATGGCCTTGGGTCTCTTGTGC
CTCGCAAGCAAGACCCATGCGCAGGTACAGTCGGCTGGTTTTGTGCTAGC
TAGTGGTTTCGGCATCAATTCGCATTCCCTTTCGATCGAAAAAGTGCTGG
CCACAGAGGATATAATCAGCGCGTTGGCAAAGCATTACGTGCGTTTGATT
CCACCGCCGCCCACGCAATCCGCCTATTTGTCCCATGACCTTGAGTTCCA
GCAAATCAGTCTCGACTCTCCTGTATCTGAGGCGACCATCTCTCCAGATT
GGTGCGTTGCGCCTGGGGAGGCGTACAAGTATACCTCGGAGAAGGGGTCT
GTCATGCTGAACGGGCACCCGCTTTACCTGAAGGGTTTGAATTGGTAAGA
GTTTCAGGGGAGAATGGGATAAAGGAATAAAGGGGATGGGAGAGTGGGAA
AGGAGACGAGGATGGTAGGGCTTGGGAAGGAGGCGAGGACGGGAGGGCGT
GTTTGTGTACCGGTGCCTGCCTTTGCTGTTTGGTCTGCACCAGGGCTGCT
AGGTCCTTATTGCACCACTTTCTGCCGAGACAGACGACTCGCAGATGACG
TAAAGGAATGAAAGAAGAATAAAGTTGTAAGGACACACATCTGCATGGAT
ATTTTTTATGATACAAAAAAATGTGCTTGGGTGTGAAAAATTGTCCCGTG
TTGCTAATTCCGCTCATGACATCACTATCTGACCTTTCTCACCCTCATCT
TTTCAGGTATGGCTTCGAAGGCGATTTGTATGTTCTGGACGGGCTGGCCG
CGTGGTCGATCGAGCACTTCATGCTCTTTCTGGCGACGCACCACTTCAAC
GCTATACGCCTGCCCTTTAGTCTGGAGTGGATTGCACGTGGTTTGGATGC
ACCACTCATGAATATTTATGTCGTGCAAGAAGATATTCGGAAGCTGACGC
AGGGCCAGGTACTGGAGCGGATCTTCGACGCAGCAGCCGCTCAGGGCATT
GTGATTCTGCTAGACCTGCATGTGATCCAGGTTAAGGAGGGGATCAAGGA
CCTTTGGTACGACAACACGGCCAGCCCCGAACGCGTCATCGATCTGTGGA
CCACGATGCTGGAGCGCTTTGCGGGGCGATGGAATCTATTGGTAAGAGAG
GAGTGGAGATAGGCGATGGGGTGAAGGAGAACCTCTGACAGTTACTCCCT
CTCACGCGCTTATCCTCTTTACCATCCCTTACGCAGGGGATCGACTTAAA
GAACGAGCCCCACGGTATCGCCACCTGGGGCAAGGGCCACCCCAAGACGG
ACTGGAACACCTTCGTCACGCACGCCATTCAAACTCTGGCTACGCGCGTG
CCTTTCTTCCAGGGCGTGTTCTTCGTAGAGGGTGTGGAGGGCAACCACTG
GAACAGCAAGTACCATAGCTGGTGGGGAGGGAACTTGGACGGTGTTCGAC
GCTATCCTATCGCCACGGGCAACGAGGCGCTCGACAAACGCGTAGTTTTT
TCGCCGCACATATACGGGCCTGAGGTATTTTCTGGCCACACTTTTTTTCG
AGACCCACGCTTTCCCGAGAACATGATGGGCATCTGGAATGCGCAGTTCG
GCTGGATCGAGAAGACGACGGGCCGTGCAATGGTGCTGGGCGAGTGGGGT
GGTACCATCGCGGGGGACAGTAAGGCGGCTGCCAACCAGCAGAAGCTGGC
CGAGTGGCTTGTCAAGGCATGTGTTCCCGACAATTTTTGGTGGTGTCTTA
ACCCGGCCACCCAGTTCAATGGAAGCTTGTTGGGCAAGACGTACCAAACG
GCAAACGAGAACGTGTTGCGCATCCTCGACTTCGTGCAGCCCCAACCCAC
ACGCTTCCATCACGACATCGCCGAGGGCGGGTCCTTGTGCGTTGTGGACG
GCGCCTTCGCCAATACCCGTTGCACCGTTAGACTGGGCCTGAACATGAAC
TCGAGTCAGGCAGCCCTGAAGGCTGAGAAGGAGTATCAGCATAAGTATTT
TGGTGCGGGCTAGGGAAAAAAAGGTAAACAAGGAAGTGTAAATTTGCAGG
AAGGGCAATAAGCGAACAGATCAAGTGCGTGAAAGAGGTAAAAAGGGTAG
AAGAAGTTCCTTCAGTGCTTTGAAAGTACCATTTGATTGGTACTTTCTTG
CATGTATGAGTAAAATATGTTGTAAAAATGTTGAAATTCTTCAAATTGCA
AAGATTTAAGTAAAAATTGTAGTAGCGTGAGCAC back to topCoding sequence (CDS) from alignment at scaffold_22:238263..240496- >mRNA_7944 ID=mRNA_7944|Name=jgi.p|Nanoce1779_2|600637|organism=Nannochloropsis oceanica|type=CDS|length=4653bp|location=Sequence derived from alignment at scaffold_22:238263..240496- (Nannochloropsis oceanica)
GGGATCGACTTAAAGAACGAGCCCCACGGTATCGCCACCTGGGGCAAGGG
CCACCCCAAGACGGACTGGAACACCTTCGTCACGCACGCCATTCAAACTC
TGGCTACGCGCGTGCCTTTCTTCCAGGGCGTGTTCTTCGTAGAGGGTGTG
GAGGGCAACCACTGGAACAGCAAGTACCATAGCTGGTGGGGAGGGAACTT
GGACGGTGTTCGACGCTATCCTATCGCCACGGGCAACGAGGCGCTCGACA
AACGCGTAGTTTTTTCGCCGCACATATACGGGCCTGAGGTATTTTCTGGC
CACACTTTTTTTCGAGACCCACGCTTTCCCGAGAACATGATGGGCATCTG
GAATGCGCAGTTCGGCTGGATCGAGAAGACGACGGGCCGTGCAATGGTGC
TGGGCGAGTGGGGTGGTACCATCGCGGGGGACAGTAAGGCGGCTGCCAAC
CAGCAGAAGCTGGCCGAGTGGCTTGTCAAGGCATGTGTTCCCGACAATTT
TTGGTGGTGTCTTAACCCGGCCACCCAGTTCAATGGAAGCTTGTTGGGCA
AGACGTACCAAACGGCAAACGAGAACGTGTTGCGCATCCTCGACTTCGTG
CAGCCCCAACCCACACGCTTCCATCACGACATCGCCGAGGGCGGGTCCTT
GTGCGTTGTGGACGGCGCCTTCGCCAATACCCGTTGCACCGTTAGACTGG
GCCTGAACATGAACTCGAGTCAGGCAGCCCTGAAGGCTGAGAAGGAGTAT
CAGCATAAGTATTTTGGTGCGGGCTAGGTATGGCTTCGAAGGCGATTTGT
ATGTTCTGGACGGGCTGGCCGCGTGGTCGATCGAGCACTTCATGCTCTTT
CTGGCGACGCACCACTTCAACGCTATACGCCTGCCCTTTAGTCTGGAGTG
GATTGCACGTGGTTTGGATGCACCACTCATGAATATTTATGTCGTGCAAG
AAGATATTCGGAAGCTGACGCAGGGCCAGGTACTGGAGCGGATCTTCGAC
GCAGCAGCCGCTCAGGGCATTGTGATTCTGCTAGACCTGCATGTGATCCA
GGTTAAGGAGGGGATCAAGGACCTTTGGTACGACAACACGGCCAGCCCCG
AACGCGTCATCGATCTGTGGACCACGATGCTGGAGCGCTTTGCGGGGCGA
TGGAATCTATTGATGCCCAGGCGGCCTGTGCTTGACATGGCCTTGGGTCT
CTTGTGCCTCGCAAGCAAGACCCATGCGCAGGTACAGTCGGCTGGTTTTG
TGCTAGCTAGTGGTTTCGGCATCAATTCGCATTCCCTTTCGATCGAAAAA
GTGCTGGCCACAGAGGATATAATCAGCGCGTTGGCAAAGCATTACGTGCG
TTTGATTCCACCGCCGCCCACGCAATCCGCCTATTTGTCCCATGACCTTG
AGTTCCAGCAAATCAGTCTCGACTCTCCTGTATCTGAGGCGACCATCTCT
CCAGATTGGTGCGTTGCGCCTGGGGAGGCGTACAAGTATACCTCGGAGAA
GGGGTCTGTCATGCTGAACGGGCACCCGCTTTACCTGAAGGGTTTGAATT
GGGGATCGACTTAAAGAACGAGCCCCACGGTATCGCCACCTGGGGCAAGG
GCCACCCCAAGACGGACTGGAACACCTTCGTCACGCACGCCATTCAAACT
CTGGCTACGCGCGTGCCTTTCTTCCAGGGCGTGTTCTTCGTAGAGGGTGT
GGAGGGCAACCACTGGAACAGCAAGTACCATAGCTGGTGGGGAGGGAACT
TGGACGGTGTTCGACGCTATCCTATCGCCACGGGCAACGAGGCGCTCGAC
AAACGCGTAGTTTTTTCGCCGCACATATACGGGCCTGAGGTATTTTCTGG
CCACACTTTTTTTCGAGACCCACGCTTTCCCGAGAACATGATGGGCATCT
GGAATGCGCAGTTCGGCTGGATCGAGAAGACGACGGGCCGTGCAATGGTG
CTGGGCGAGTGGGGTGGTACCATCGCGGGGGACAGTAAGGCGGCTGCCAA
CCAGCAGAAGCTGGCCGAGTGGCTTGTCAAGGCATGTGTTCCCGACAATT
TTTGGTGGTGTCTTAACCCGGCCACCCAGTTCAATGGAAGCTTGTTGGGC
AAGACGTACCAAACGGCAAACGAGAACGTGTTGCGCATCCTCGACTTCGT
GCAGCCCCAACCCACACGCTTCCATCACGACATCGCCGAGGGCGGGTCCT
TGTGCGTTGTGGACGGCGCCTTCGCCAATACCCGTTGCACCGTTAGACTG
GGCCTGAACATGAACTCGAGTCAGGCAGCCCTGAAGGCTGAGAAGGAGTA
TCAGCATAAGTATTTTGGTGCGGGCTAGGTATGGCTTCGAAGGCGATTTG
TATGTTCTGGACGGGCTGGCCGCGTGGTCGATCGAGCACTTCATGCTCTT
TCTGGCGACGCACCACTTCAACGCTATACGCCTGCCCTTTAGTCTGGAGT
GGATTGCACGTGGTTTGGATGCACCACTCATGAATATTTATGTCGTGCAA
GAAGATATTCGGAAGCTGACGCAGGGCCAGGTACTGGAGCGGATCTTCGA
CGCAGCAGCCGCTCAGGGCATTGTGATTCTGCTAGACCTGCATGTGATCC
AGGTTAAGGAGGGGATCAAGGACCTTTGGTACGACAACACGGCCAGCCCC
GAACGCGTCATCGATCTGTGGACCACGATGCTGGAGCGCTTTGCGGGGCG
ATGGAATCTATTGATGCCCAGGCGGCCTGTGCTTGACATGGCCTTGGGTC
TCTTGTGCCTCGCAAGCAAGACCCATGCGCAGGTACAGTCGGCTGGTTTT
GTGCTAGCTAGTGGTTTCGGCATCAATTCGCATTCCCTTTCGATCGAAAA
AGTGCTGGCCACAGAGGATATAATCAGCGCGTTGGCAAAGCATTACGTGC
GTTTGATTCCACCGCCGCCCACGCAATCCGCCTATTTGTCCCATGACCTT
GAGTTCCAGCAAATCAGTCTCGACTCTCCTGTATCTGAGGCGACCATCTC
TCCAGATTGGTGCGTTGCGCCTGGGGAGGCGTACAAGTATACCTCGGAGA
AGGGGTCTGTCATGCTGAACGGGCACCCGCTTTACCTGAAGGGTTTGAAT
TGGGGATCGACTTAAAGAACGAGCCCCACGGTATCGCCACCTGGGGCAAG
GGCCACCCCAAGACGGACTGGAACACCTTCGTCACGCACGCCATTCAAAC
TCTGGCTACGCGCGTGCCTTTCTTCCAGGGCGTGTTCTTCGTAGAGGGTG
TGGAGGGCAACCACTGGAACAGCAAGTACCATAGCTGGTGGGGAGGGAAC
TTGGACGGTGTTCGACGCTATCCTATCGCCACGGGCAACGAGGCGCTCGA
CAAACGCGTAGTTTTTTCGCCGCACATATACGGGCCTGAGGTATTTTCTG
GCCACACTTTTTTTCGAGACCCACGCTTTCCCGAGAACATGATGGGCATC
TGGAATGCGCAGTTCGGCTGGATCGAGAAGACGACGGGCCGTGCAATGGT
GCTGGGCGAGTGGGGTGGTACCATCGCGGGGGACAGTAAGGCGGCTGCCA
ACCAGCAGAAGCTGGCCGAGTGGCTTGTCAAGGCATGTGTTCCCGACAAT
TTTTGGTGGTGTCTTAACCCGGCCACCCAGTTCAATGGAAGCTTGTTGGG
CAAGACGTACCAAACGGCAAACGAGAACGTGTTGCGCATCCTCGACTTCG
TGCAGCCCCAACCCACACGCTTCCATCACGACATCGCCGAGGGCGGGTCC
TTGTGCGTTGTGGACGGCGCCTTCGCCAATACCCGTTGCACCGTTAGACT
GGGCCTGAACATGAACTCGAGTCAGGCAGCCCTGAAGGCTGAGAAGGAGT
ATCAGCATAAGTATTTTGGTGCGGGCTAGGTATGGCTTCGAAGGCGATTT
GTATGTTCTGGACGGGCTGGCCGCGTGGTCGATCGAGCACTTCATGCTCT
TTCTGGCGACGCACCACTTCAACGCTATACGCCTGCCCTTTAGTCTGGAG
TGGATTGCACGTGGTTTGGATGCACCACTCATGAATATTTATGTCGTGCA
AGAAGATATTCGGAAGCTGACGCAGGGCCAGGTACTGGAGCGGATCTTCG
ACGCAGCAGCCGCTCAGGGCATTGTGATTCTGCTAGACCTGCATGTGATC
CAGGTTAAGGAGGGGATCAAGGACCTTTGGTACGACAACACGGCCAGCCC
CGAACGCGTCATCGATCTGTGGACCACGATGCTGGAGCGCTTTGCGGGGC
GATGGAATCTATTGATGCCCAGGCGGCCTGTGCTTGACATGGCCTTGGGT
CTCTTGTGCCTCGCAAGCAAGACCCATGCGCAGGTACAGTCGGCTGGTTT
TGTGCTAGCTAGTGGTTTCGGCATCAATTCGCATTCCCTTTCGATCGAAA
AAGTGCTGGCCACAGAGGATATAATCAGCGCGTTGGCAAAGCATTACGTG
CGTTTGATTCCACCGCCGCCCACGCAATCCGCCTATTTGTCCCATGACCT
TGAGTTCCAGCAAATCAGTCTCGACTCTCCTGTATCTGAGGCGACCATCT
CTCCAGATTGGTGCGTTGCGCCTGGGGAGGCGTACAAGTATACCTCGGAG
AAGGGGTCTGTCATGCTGAACGGGCACCCGCTTTACCTGAAGGGTTTGAA
TTG back to top
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