|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 600714 |
| Track | FilteredModels2 |
| ProteinId | 600628 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:232922..235431 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7943 ID=mRNA_7943|Name=jgi.p|Nanoce1779_2|600628|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp
ACCACGGGACGACGTCACAAAGATTGCATAGAATCTTGTGCATTGTATTT
TTCTCCAGGTGTATTGCTAAGTGTGTATATGCTTTAATGGTTTGTGGAAG
GAGAAGATCGCGGGAAACCATCGTTTTAAGTGCGCGACAGACACGGACAG
ACAATAATCGATCAGTCTTAGACCTTGTTCAATCAAGTTCAATGACTGCT
GCCATGATCTTTTGTGCCTCCTCCTCTTTCTGTTGATATATCAACGTGGC
CGCCCGGCTGAGCATCCTGTCTTGTCTGTCTGAAGAATGTGCTTTAGGAG
GAGCTACTGGAGACCATAGGTGTCGCTCCAGCTGCTCCGAAATATAAATT
GTTCTGCTTGTGCCATCACCTCACTTACCCTCCGACAGACTCGCCCTTGC
ACATAGGATGAAAACACTGGACTCCTTGACAGTGGTGACATCCACCATCC
CCGTCACATCCGTCTCCTTGGCGTTCTTGGCGCTCTCAGGCTTGGTGGCT
GTGGTCATCCATTATGGGCACGGAGGACCCAAAAGCAGACAGGGCGCCTT
GCCTGGACCTGCGGGGGATGGTCCCTTACTGGACAATAGCCTGGAAGTCC
AGGCGAATCTGCCACGCTTGCTTGACTGGTTGCTGGAACAGTCGCTGAAG
TACGGGGGGGACGACGGGCTGGGTACGTGGAGCTTCAAAATTTTCATGCA
ACCAAACATGATCTTGACGCACAATCCGGATAACGTGCGGCATATCCTGA
CGAACATCAACACCTACGGAAAGGGGCCTGTCTGGCGCGAGAACTTTTAC
CCCATCCTTGGTGATGGCATCTTCTCGGCTGACTTTGATAACTGGCTGAT
GCAACGGAAGAGGGCTGCCAACATGTTCAAAGTGACCAACTTCAAGAATT
CCATGCTGGAGGCCGTGCGGAGCAAGTGCCTGAAATGTTTAGATTTGATC
CGTGACCAGGTCAAAGAATCGACCGCCTCCGCTGCGGCGCCTACGTCGGT
GGTGGACTTGCAGGAGTACTTCTTCAAGATGACGCTAGACACGATCGGGG
AGATCGCCTTTGGCCAGGACTTGGGGGCGCTGAGCGGGAAAAACCTAGAC
TTTATGGAGGCATTTGATTACTGCCAGATGTATATCAGTGACCTCTTCTT
CCGGCCGGGCCCCGCCTGGCTGTGGAATTATTTTACCCCTGCGGGTTGGT
GCTTTCGAGCCAAGACTAAGGTATTGCAGCAATACGGTTCGTCGCTCGTC
AAGGAGATGATCGCGCGGGAACTGGAGGACAAGAACGAGGAAAGCGAGGA
TGTGGATGGGGGGCACGAACATGGGCACGAGAGGAAGGAGACCATCTTGT
CTTACTTCTTGCAGAAGGAATCCCGCGAGTCCCTGAAGCATGATCCCCGC
ACGGTGAAGTTCCTGGCCGACGTAATTATGAACTTTCAGCTCGCGGGCCG
CGATACTGTGGCGCAGGCATTTTCCTGGGCAGTGCACCTGCTTTCCCTTC
ATCCTGATATCCAGGAGAAGGCTTACCAAGAGGCCCAAGCCATGCTGGGC
TCGCCAACGGCCGCGGCCAGTGCCACGTTTGACCAGATTCAGCGATTAGA
ATACCTGCACGCCGTGGTGACCGAGGTGCTCCGCCTGTATCCGAGCGTGC
CCAAGGAGGGGAAGTGGGTCTTCAAGGACGATGTCCTGCCCGACGGCTCG
CATGTCGCCAAGGGCTCCTGGGTTTTGTTCGTGCCCTATGTCATGGGTCG
CCTCGACACACTGTGGGCGGATGCGGGTGCCTTCAAGCCCGAGCGGCATC
TGAACAAACCGAAGCCCTCCAACTTCATTTTCACAGCCTTCCAGGGCGGC
CCGCGCATATGCCTGGGCGTGAATCTGGCCTACATGCAGCTGCAGTATGG
GCTGGCTTTGCTGCTGCTCTCCTTCAAGCTTGAGCCCGTGAATGGGGGAA
AGGAGGTGCTGCCCCTGCAACACTCCACCACCTTGCCCTCCCAGAAAGGT
GTCCGCCTGCAGGTCACGCTTCGGCACGCGACAGCCGGGGGAGGCTGAAA
GAAGATGTAATCAGAGCAGTGATTGGAGGGGGAGAAGTGCGAGAAGGAGT
GGGCGTTTGGCGCGAACGACCGAGAGGAGGGGAGGACGGGAGAGAGACAG
CAGATAGGCCAGGACATACATAGAAGGGCGAGGTTGTGCAGTCCGTGAAT
TGAATAGTGTTTTGTTATGTTTGATAGACGATGATCTAGCCCAGAAACGT
ATAATCATGAACAAAGTTGCGGTAATAAGAATGCAAGAGGGAACAAAGCA
GCAGCAGCAGCAGCAATGAC back to topprotein sequence of jgi.p|Nanoce1779_2|600628 >mRNA_7943-protein ID=mRNA_7943-protein|Name=jgi.p|Nanoce1779_2|600628|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MKTLDSLTVVTSTIPVTSVSLAFLALSGLVAVVIHYGHGGPKSRQGALPG
PAGDGPLLDNSLEVQANLPRLLDWLLEQSLKYGGDDGLGTWSFKIFMQPN
MILTHNPDNVRHILTNINTYGKGPVWRENFYPILGDGIFSADFDNWLMQR
KRAANMFKVTNFKNSMLEAVRSKCLKCLDLIRDQVKESTASAAAPTSVVD
LQEYFFKMTLDTIGEIAFGQDLGALSGKNLDFMEAFDYCQMYISDLFFRP
GPAWLWNYFTPAGWCFRAKTKVLQQYGSSLVKEMIARELEDKNEESEDVD
GGHEHGHERKETILSYFLQKESRESLKHDPRTVKFLADVIMNFQLAGRDT
VAQAFSWAVHLLSLHPDIQEKAYQEAQAMLGSPTAAASATFDQIQRLEYL
HAVVTEVLRLYPSVPKEGKWVFKDDVLPDGSHVAKGSWVLFVPYVMGRLD
TLWADAGAFKPERHLNKPKPSNFIFTAFQGGPRICLGVNLAYMQLQYGLA
LLLLSFKLEPVNGGKEVLPLQHSTTLPSQKGVRLQVTLRHATAGGG* back to topmRNA from alignment at scaffold_22:232922..235431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7943 ID=mRNA_7943|Name=jgi.p|Nanoce1779_2|600628|organism=Nannochloropsis oceanica|type=mRNA|length=2510bp|location=Sequence derived from alignment at scaffold_22:232922..235431- (Nannochloropsis oceanica)
ACCACGGGACGACGTCACAAAGATTGCATAGAATCTTGTGCATTGTATTT
TTCTCCAGGTGTATTGCTAAGTGTGTATATGCTTTAATGGTTTGTGGAAG
GAGAAGATCGCGGGAAACCATCGTTTTAAGTGCGCGACAGACACGGACAG
ACAATAATCGATCAGTCTTAGACCTTGTTCAATCAAGTTCAATGACTGCT
GCCATGATCTTTTGTGCCTCCTCCTCTTTCTGTTGATATATCAACGTGGC
CGCCCGGCTGAGCATCCTGTCTTGTCTGTCTGAAGAATGTGCTTTAGGAG
GAGCTACTGGAGACCATAGGTGTCGCTCCAGCTGCTCCGAAATATAAATT
GTTCTGCTTGTGCCATCACCTCACTTACCCTCCGACAGACTCGCCCTTGC
ACATAGGATGAAAACACTGGACTCCTTGACAGTGGTGACATCCACCATCC
CCGTCACATCCGTCTCCTTGGCGTTCTTGGCGCTCTCAGGCTTGGTGGCT
GTGGTCATCCATTATGGGCACGGAGGACCCAAAAGCAGACAGGGCGCCTT
GCCTGGACCTGCGGGGGATGGTCCCTTACTGGACAATAGCCTGGAAGTCC
AGGCGAATCTGCCACGCTTGCTTGACTGGTTGCTGGAACAGTCGCTGAAG
TACGGGGGGGACGACGGGCTGGGTACGTGGAGCTTCAAAATTTTCATGCA
ACCAAACATGATCTTGACGCACAATCCGGATAACGTGCGGCATATCCTGA
CGAACATCAACACCTACGGAAAGGGGCCTGTCTGGCGCGAGAACTTTTAC
CCCATCCTTGTACGTGCAGCGGTGCCAACACGGAAATGATGGGGGGGGAG
GGAGGGAGATTGGCACCCTGGGGGGAAATAGGGATGAGGCAGTACCTACA
CATCCATTTGAAGGTTCTATGTTGCTCCTTTTTCTTTGACCACATTACTA
ACAAACTTTATCTCTTCCTCTTATTCCACCCACTTTGCATTTTTATAAGG
GTGATGGCATCTTCTCGGCTGACTTTGATAACTGGCTGATGCAACGGAAG
AGGGCTGCCAACATGTTCAAAGTGACCAACTTCAAGAATTCCATGCTGGA
GGCCGTGCGGAGCAAGTGCCTGAAATGTTTAGATTTGATCCGTGACCAGG
TCAAAGAATCGACCGCCTCCGCTGCGGCGCCTACGTCGGTGGTGGACTTG
CAGGAGTACTTCTTCAAGATGACGCTAGACACGATCGGGGAGATCGCCTT
TGGCCAGGACTTGGGGGCGCTGAGCGGGAAAAACCTAGACTTTATGGAGG
CATTTGATTACTGCCAGATGTATATCAGTGACCTCTTCTTCCGGCCGGGC
CCCGCCTGGCTGTGGAATTATTTTACCCCTGCGGGTTGGTGCTTTCGAGC
CAAGACTAAGGTATTGCAGCAATACGGTTCGTCGCTCGTCAAGGAGATGA
TCGCGCGGGAACTGGAGGACAAGAACGAGGAAAGCGAGGATGTGGATGGG
GGGCACGAACATGGGCACGAGAGGAAGGAGACCATCTTGTCTTACTTCTT
GCAGAAGGAATCCCGCGAGTCCCTGAAGCATGATCCCCGCACGGTGAAGT
TCCTGGCCGACGTAATTATGAACTTTCAGCTCGCGGGCCGCGATACTGTG
GCGCAGGCATTTTCCTGGGCAGTGCACCTGCTTTCCCTTCATCCTGATAT
CCAGGAGAAGGCTTACCAAGAGGCCCAAGCCATGCTGGGCTCGCCAACGG
CCGCGGCCAGTGCCACGTTTGACCAGATTCAGCGATTAGAATACCTGCAC
GCCGTGGTGACCGAGGTGCTCCGCCTGTATCCGAGCGTGCCCAAGGAGGG
GAAGTGGGTCTTCAAGGACGATGTCCTGCCCGACGGCTCGCATGTCGCCA
AGGGCTCCTGGGTTTTGTTCGTGCCCTATGTCATGGGTCGCCTCGACACA
CTGTGGGCGGATGCGGGTGCCTTCAAGCCCGAGCGGCATCTGAACAAACC
GAAGCCCTCCAACTTCATTTTCACAGCCTTCCAGGGCGGCCCGCGCATAT
GCCTGGGCGTGAATCTGGCCTACATGCAGCTGCAGTATGGGCTGGCTTTG
CTGCTGCTCTCCTTCAAGCTTGAGCCCGTGAATGGGGGAAAGGAGGTGCT
GCCCCTGCAACACTCCACCACCTTGCCCTCCCAGAAAGGTGTCCGCCTGC
AGGTCACGCTTCGGCACGCGACAGCCGGGGGAGGCTGAAAGAAGATGTAA
TCAGAGCAGTGATTGGAGGGGGAGAAGTGCGAGAAGGAGTGGGCGTTTGG
CGCGAACGACCGAGAGGAGGGGAGGACGGGAGAGAGACAGCAGATAGGCC
AGGACATACATAGAAGGGCGAGGTTGTGCAGTCCGTGAATTGAATAGTGT
TTTGTTATGTTTGATAGACGATGATCTAGCCCAGAAACGTATAATCATGA
ACAAAGTTGCGGTAATAAGAATGCAAGAGGGAACAAAGCAGCAGCAGCAG
CAGCAATGAC back to topCoding sequence (CDS) from alignment at scaffold_22:232922..235431- >mRNA_7943 ID=mRNA_7943|Name=jgi.p|Nanoce1779_2|600628|organism=Nannochloropsis oceanica|type=CDS|length=3282bp|location=Sequence derived from alignment at scaffold_22:232922..235431- (Nannochloropsis oceanica)
GGTGATGGCATCTTCTCGGCTGACTTTGATAACTGGCTGATGCAACGGAA
GAGGGCTGCCAACATGTTCAAAGTGACCAACTTCAAGAATTCCATGCTGG
AGGCCGTGCGGAGCAAGTGCCTGAAATGTTTAGATTTGATCCGTGACCAG
GTCAAAGAATCGACCGCCTCCGCTGCGGCGCCTACGTCGGTGGTGGACTT
GCAGGAGTACTTCTTCAAGATGACGCTAGACACGATCGGGGAGATCGCCT
TTGGCCAGGACTTGGGGGCGCTGAGCGGGAAAAACCTAGACTTTATGGAG
GCATTTGATTACTGCCAGATGTATATCAGTGACCTCTTCTTCCGGCCGGG
CCCCGCCTGGCTGTGGAATTATTTTACCCCTGCGGGTTGGTGCTTTCGAG
CCAAGACTAAGGTATTGCAGCAATACGGTTCGTCGCTCGTCAAGGAGATG
ATCGCGCGGGAACTGGAGGACAAGAACGAGGAAAGCGAGGATGTGGATGG
GGGGCACGAACATGGGCACGAGAGGAAGGAGACCATCTTGTCTTACTTCT
TGCAGAAGGAATCCCGCGAGTCCCTGAAGCATGATCCCCGCACGGTGAAG
TTCCTGGCCGACGTAATTATGAACTTTCAGCTCGCGGGCCGCGATACTGT
GGCGCAGGCATTTTCCTGGGCAGTGCACCTGCTTTCCCTTCATCCTGATA
TCCAGGAGAAGGCTTACCAAGAGGCCCAAGCCATGCTGGGCTCGCCAACG
GCCGCGGCCAGTGCCACGTTTGACCAGATTCAGCGATTAGAATACCTGCA
CGCCGTGGTGACCGAGGTGCTCCGCCTGTATCCGAGCGTGCCCAAGGAGG
GGAAGTGGGTCTTCAAGGACGATGTCCTGCCCGACGGCTCGCATGTCGCC
AAGGGCTCCTGGGTTTTGTTCGTGCCCTATGTCATGGGTCGCCTCGACAC
ACTGTGGGCGGATGCGGGTGCCTTCAAGCCCGAGCGGCATCTGAACAAAC
CGAAGCCCTCCAACTTCATTTTCACAGCCTTCCAGGGCGGCCCGCGCATA
TGCCTGGGCGTGAATCTGGCCTACATGCAGCTGCAGTATGGGCTGGCTTT
GCTGCTGCTCTCCTTCAAGCTTGAGCCCGTGAATGGGGGAAAGGAGGTGC
TGCCCCTGCAACACTCCACCACCTTGCCCTCCCAGAAAGGTGTCCGCCTG
CAGGTCACGCTTCGGCACGCGACAGCCGGGGGAGGCTGAATGAAAACACT
GGACTCCTTGACAGTGGTGACATCCACCATCCCCGTCACATCCGTCTCCT
TGGCGTTCTTGGCGCTCTCAGGCTTGGTGGCTGTGGTCATCCATTATGGG
CACGGAGGACCCAAAAGCAGACAGGGCGCCTTGCCTGGACCTGCGGGGGA
TGGTCCCTTACTGGACAATAGCCTGGAAGTCCAGGCGAATCTGCCACGCT
TGCTTGACTGGTTGCTGGAACAGTCGCTGAAGTACGGGGGGGACGACGGG
CTGGGTACGTGGAGCTTCAAAATTTTCATGCAACCAAACATGATCTTGAC
GCACAATCCGGATAACGTGCGGCATATCCTGACGAACATCAACACCTACG
GAAAGGGGCCTGTCTGGCGCGAGAACTTTTACCCCATCCTTGGTGATGGC
ATCTTCTCGGCTGACTTTGATAACTGGCTGATGCAACGGAAGAGGGCTGC
CAACATGTTCAAAGTGACCAACTTCAAGAATTCCATGCTGGAGGCCGTGC
GGAGCAAGTGCCTGAAATGTTTAGATTTGATCCGTGACCAGGTCAAAGAA
TCGACCGCCTCCGCTGCGGCGCCTACGTCGGTGGTGGACTTGCAGGAGTA
CTTCTTCAAGATGACGCTAGACACGATCGGGGAGATCGCCTTTGGCCAGG
ACTTGGGGGCGCTGAGCGGGAAAAACCTAGACTTTATGGAGGCATTTGAT
TACTGCCAGATGTATATCAGTGACCTCTTCTTCCGGCCGGGCCCCGCCTG
GCTGTGGAATTATTTTACCCCTGCGGGTTGGTGCTTTCGAGCCAAGACTA
AGGTATTGCAGCAATACGGTTCGTCGCTCGTCAAGGAGATGATCGCGCGG
GAACTGGAGGACAAGAACGAGGAAAGCGAGGATGTGGATGGGGGGCACGA
ACATGGGCACGAGAGGAAGGAGACCATCTTGTCTTACTTCTTGCAGAAGG
AATCCCGCGAGTCCCTGAAGCATGATCCCCGCACGGTGAAGTTCCTGGCC
GACGTAATTATGAACTTTCAGCTCGCGGGCCGCGATACTGTGGCGCAGGC
ATTTTCCTGGGCAGTGCACCTGCTTTCCCTTCATCCTGATATCCAGGAGA
AGGCTTACCAAGAGGCCCAAGCCATGCTGGGCTCGCCAACGGCCGCGGCC
AGTGCCACGTTTGACCAGATTCAGCGATTAGAATACCTGCACGCCGTGGT
GACCGAGGTGCTCCGCCTGTATCCGAGCGTGCCCAAGGAGGGGAAGTGGG
TCTTCAAGGACGATGTCCTGCCCGACGGCTCGCATGTCGCCAAGGGCTCC
TGGGTTTTGTTCGTGCCCTATGTCATGGGTCGCCTCGACACACTGTGGGC
GGATGCGGGTGCCTTCAAGCCCGAGCGGCATCTGAACAAACCGAAGCCCT
CCAACTTCATTTTCACAGCCTTCCAGGGCGGCCCGCGCATATGCCTGGGC
GTGAATCTGGCCTACATGCAGCTGCAGTATGGGCTGGCTTTGCTGCTGCT
CTCCTTCAAGCTTGAGCCCGTGAATGGGGGAAAGGAGGTGCTGCCCCTGC
AACACTCCACCACCTTGCCCTCCCAGAAAGGTGTCCGCCTGCAGGTCACG
CTTCGGCACGCGACAGCCGGGGGAGGCTGAATGAAAACACTGGACTCCTT
GACAGTGGTGACATCCACCATCCCCGTCACATCCGTCTCCTTGGCGTTCT
TGGCGCTCTCAGGCTTGGTGGCTGTGGTCATCCATTATGGGCACGGAGGA
CCCAAAAGCAGACAGGGCGCCTTGCCTGGACCTGCGGGGGATGGTCCCTT
ACTGGACAATAGCCTGGAAGTCCAGGCGAATCTGCCACGCTTGCTTGACT
GGTTGCTGGAACAGTCGCTGAAGTACGGGGGGGACGACGGGCTGGGTACG
TGGAGCTTCAAAATTTTCATGCAACCAAACATGATCTTGACGCACAATCC
GGATAACGTGCGGCATATCCTGACGAACATCAACACCTACGGAAAGGGGC
CTGTCTGGCGCGAGAACTTTTACCCCATCCTT back to top
|