jgi.p|Nanoce1779_2|574166, mRNA_794 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574166
Unique Name	mRNA_794
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1001
Alignment location	scaffold_2:451683..453033 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574252
Track	FilteredModels2
ProteinId	574166

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:451683..453033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574166	gene_794	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574166	mRNA_794-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_794	CDS_794	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:451683..453033+
coding sequence from alignment at scaffold_2:451683..453033+

mRNA sequence

>mRNA_794 ID=mRNA_794|Name=jgi.p|Nanoce1779_2|574166|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
ACAGGCTCGCCACGCAGGCCTATATCACCATGCTTCGACCGATAGCGCTC
TTGTGCTGCCTCCTCTTCGTCCAAGGCTTCCTCTCGCCCCTGCCCTTGTC
GTCCTCCTCGGCGTCGGCTACTACCGTGCGAGTACACGCTGCCGGCGCTT
CGTCTACCCCTCAGTTCAACCTGCGCTATGGAGAGCTGCCCCAAGAAGAG
GATCCCGCCGAGCGCTTGGCCCGACAAAAGCGGTGGGAGACGGAATACCT
AGCCTACGTCAAGCGAAACGGCGCTCACCTCTGCGCATTAAGCTGGCGTG
GTTACCAAGCCGAAGGCCGTGGTGGCATATTATCGAAATACGAAGCCAGA
GACACGGGGGGGCAGGAGCAAGAGGCCTTGAGTGAGGTTGATCGCTTGAG
TGGTGTGCCGAGCATGTACGTGAGCTTAGCCCGATGGATGGAGAGTGGAG
ACGCTGCGAAAGCTGGCCCAGATCAGGCAGAAAGACAGGATTTACAGCAG
ATTTTGGATCGGGTGGTGAGCTACGACCCAGAGAAGGCATTTGTGGTTGT
TTTTCAGGCACATGGTGTGATGGGTGCTGATATCGTGACCCCCAATATTA
GCCCGCCGGAAATGGCGCGAAGGTTGATGAAGGATGAGACCGACGGGGCT
ACTCAAACGATTGACGTGAACGGGCATGAGGTGTTGGTGGACAACGAATG
AGGAGCTAGTAGAGTGGCAAGAGGAGTGAGGAATGAAGGAATTGCATGTA
AGGACGACGGGGTAGTGGCTTTTCAAATGATCATAGTCGTGACTGGACAT
ATGAGGTGGTGTTAGACAAGGAGTGAGAAGGATATAGAGGATTGAGTGAA
AGGTAGTGAAATGAAGGTCCGAAATGTTAAGGAATGGTGTCCGAGAGGAG
AGCGGAGGGTTAACAAAGACACACACCCTACTTCCGCGAGGGTTTTGGAA
GCCGGGAAGACATAGAATATAAAAAAACAGCAGCAGAAGCAGCAGCAGCA
G

protein sequence of jgi.p|Nanoce1779_2|574166

>mRNA_794-protein ID=mRNA_794-protein|Name=jgi.p|Nanoce1779_2|574166|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MLRPIALLCCLLFVQGFLSPLPLSSSSASATTVRVHAAGASSTPQFNLRY
GELPQEEDPAERLARQKRWETEYLAYVKRNGAHLCALSWRGYQAEGRGGI
LSKYEARDTGGQEQEALSEVDRLSGVPSMYVSLARWMESGDAAKAGPDQA
ERQDLQQILDRVVSYDPEKAFVVVFQAHGVMGADIVTPNISPPEMARRLM
KDETDGATQTIDVNGHEVLVDNE*

mRNA from alignment at scaffold_2:451683..453033+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_794 ID=mRNA_794|Name=jgi.p|Nanoce1779_2|574166|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp|location=Sequence derived from alignment at scaffold_2:451683..453033+ (Nannochloropsis oceanica)
ACAGGCTCGCCACGCAGGCCTATATCACCATGCTTCGACCGATAGCGCTC
TTGTGCTGCCTCCTCTTCGTCCAAGGCTTCCTCTCGCCCCTGCCCTTGTC
GTCCTCCTCGGCGTCGGCTACTACCGTGCGAGTACACGCTGCCGGCGCTT
CGTCTACCCCTCAGTTCAACCTGCGCTATGGAGAGCTGCCCCAAGAAGAG
GATCCCGCCGAGCGCTTGGCCCGACAAAAGCGGTGGGAGACGGAATACCT
AGCCTACGTCAAGGTCGGTAGGGTTGTGGAGATGAAGGAGGAGAATGGGC
GGGAGGGAGGGGTGGGACGGGCGGGAGGAATAGATCATTCGCGTCTTTGG
AACACAGTAGGACAGGAAGGGTAGAAGAGAGGGAATTAATATGACACTAG
GGAGGCTACCCCATGCCTCAGCAAACCAGTCTGTCACCCCTTCCGTGCAT
CCATACCAACGCTTCCACTGTCCCCATGAACACAATGCCCCTTACAACAG
CGAAACGGCGCTCACCTCTGCGCATTAAGCTGGCGTGGTTACCAAGCCGA
AGGCCGTGGTGGCATATTATCGAAATACGAAGCCAGAGACACGGGGGGGC
AGGAGCAAGAGGCCTTGAGTGAGGTTGATCGCTTGAGTGGTGTGCCGAGC
ATGTACGTGAGCTTAGCCCGATGGATGGAGAGTGGAGACGCTGCGAAAGC
TGGCCCAGATCAGGCAGAAAGACAGGATTTACAGCAGATTTTGGATCGGG
TGGTGAGCTACGACCCAGAGAAGGTACGTCCTACCACTCTTTTCCTCCCC
TCACACCCTCTCTTTTCCCCACCTCTCATTGAACTGTACATTGATCCCTC
CCTCCCACCCACCCTTCCTCTTCTTCTCCACACCAGGCATTTGTGGTTGT
TTTTCAGGCACATGGTGTGATGGGTGCTGATATCGTGACCCCCAATATTA
GCCCGCCGGAAATGGCGCGAAGGTTGATGAAGGATGAGACCGACGGGGCT
ACTCAAACGATTGACGTGAACGGGCATGAGGTGTTGGTGGACAACGAATG
AGGAGCTAGTAGAGTGGCAAGAGGAGTGAGGAATGAAGGAATTGCATGTA
AGGACGACGGGGTAGTGGCTTTTCAAATGATCATAGTCGTGACTGGACAT
ATGAGGTGGTGTTAGACAAGGAGTGAGAAGGATATAGAGGATTGAGTGAA
AGGTAGTGAAATGAAGGTCCGAAATGTTAAGGAATGGTGTCCGAGAGGAG
AGCGGAGGGTTAACAAAGACACACACCCTACTTCCGCGAGGGTTTTGGAA
GCCGGGAAGACATAGAATATAAAAAAACAGCAGCAGAAGCAGCAGCAGCA
G

Coding sequence (CDS) from alignment at scaffold_2:451683..453033+

>mRNA_794 ID=mRNA_794|Name=jgi.p|Nanoce1779_2|574166|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_2:451683..453033+ (Nannochloropsis oceanica)
ATGCTTCGACCGATAGCGCTCTTGTGCTGCCTCCTCTTCGTCCAAGGCTT
CCTCTCGCCCCTGCCCTTGTCGTCCTCCTCGGCGTCGGCTACTACCGTGC
GAGTACACGCTGCCGGCGCTTCGTCTACCCCTCAGTTCAACCTGCGCTAT
GGAGAGCTGCCCCAAGAAGAGGATCCCGCCGAGCGCTTGGCCCGACAAAA
GCGGTGGGAGACGGAATACCTAGCCTACGTCAAGCGAAACGGCGCTCACC
TCTGCGCATTAAGCTGGCGTGGTTACCAAGCCGAAGGCCGTGGTGGCATA
TTATCGAAATACGAAGCCAGAGACACGGGGGGGCAGGAGCAAGAGGCCTT
GAGTGAGGTTGATCGCTTGAGTGGTGTGCCGAGCATGTACGTGAGCTTAG
CCCGATGGATGGAGAGTGGAGACGCTGCGAAAGCTGGCCCAGATCAGGCA
GAAAGACAGGATTTACAGCAGATTTTGGATCGGGTGGTGAGCTACGACCC
AGAGAAGGCATTTGTGGTTGTTTTTCAGGCACATGGTGTGATGGGTGCTG
ATATCGTGACCCCCAATATTAGCCCGCCGGAAATGGCGCGAAGGTTGATG
AAGGATGAGACCGACGGGGCTACTCAAACGATTGACGTGAACGGGCATGA
GGTGTTGGTGGACAACGAATGAATGCTTCGACCGATAGCGCTCTTGTGCT
GCCTCCTCTTCGTCCAAGGCTTCCTCTCGCCCCTGCCCTTGTCGTCCTCC
TCGGCGTCGGCTACTACCGTGCGAGTACACGCTGCCGGCGCTTCGTCTAC
CCCTCAGTTCAACCTGCGCTATGGAGAGCTGCCCCAAGAAGAGGATCCCG
CCGAGCGCTTGGCCCGACAAAAGCGGTGGGAGACGGAATACCTAGCCTAC
GTCAAGCGAAACGGCGCTCACCTCTGCGCATTAAGCTGGCGTGGTTACCA
AGCCGAAGGCCGTGGTGGCATATTATCGAAATACGAAGCCAGAGACACGG
GGGGGCAGGAGCAAGAGGCCTTGAGTGAGGTTGATCGCTTGAGTGGTGTG
CCGAGCATGTACGTGAGCTTAGCCCGATGGATGGAGAGTGGAGACGCTGC
GAAAGCTGGCCCAGATCAGGCAGAAAGACAGGATTTACAGCAGATTTTGG
ATCGGGTGGTGAGCTACGACCCAGAGAAGGCATTTGTGGTTGTTTTTCAG
GCACATGGTGTGATGGGTGCTGATATCGTGACCCCCAATATTAGCCCGCC
GGAAATGGCGCGAAGGTTGATGAAGGATGAGACCGACGGGGCTACTCAAA
CGATTGACGTGAACGGGCATGAGGTGTTGGTGGACAACGAATGAATGCTT
CGACCGATAGCGCTCTTGTGCTGCCTCCTCTTCGTCCAAGGCTTCCTCTC
GCCCCTGCCCTTGTCGTCCTCCTCGGCGTCGGCTACTACCGTGCGAGTAC
ACGCTGCCGGCGCTTCGTCTACCCCTCAGTTCAACCTGCGCTATGGAGAG
CTGCCCCAAGAAGAGGATCCCGCCGAGCGCTTGGCCCGACAAAAGCGGTG
GGAGACGGAATACCTAGCCTACGTCAAGCGAAACGGCGCTCACCTCTGCG
CATTAAGCTGGCGTGGTTACCAAGCCGAAGGCCGTGGTGGCATATTATCG
AAATACGAAGCCAGAGACACGGGGGGGCAGGAGCAAGAGGCCTTGAGTGA
GGTTGATCGCTTGAGTGGTGTGCCGAGCATGTACGTGAGCTTAGCCCGAT
GGATGGAGAGTGGAGACGCTGCGAAAGCTGGCCCAGATCAGGCAGAAAGA
CAGGATTTACAGCAGATTTTGGATCGGGTGGTGAGCTACGACCCAGAGAA
GGCATTTGTGGTTGTTTTTCAGGCACATGGTGTGATGGGTGCTGATATCG
TGACCCCCAATATTAGCCCGCCGGAAATGGCGCGAAGGTTGATGAAGGAT
GAGACCGACGGGGCTACTCAAACGATTGACGTGAACGGGCATGAGGTGTT
GGTGGACAACGAATGA

Synonyms

Publications