jgi.p|Nanoce1779_2|600577, mRNA_7938 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600577
Unique NamemRNA_7938
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2204
Alignment locationscaffold_22:216959..219162 -

Link to JBrowse

Properties
Property NameValue
TranscriptId600663
TrackFilteredModels2
ProteinId600577
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:216959..219162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600577gene_7938Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600577mRNA_7938-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7938CDS_7938Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7938 ID=mRNA_7938|Name=jgi.p|Nanoce1779_2|600577|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp
ATACGAAGAGTGCGCTCCTCCGCTCCTCCGCTCCTCCTCGTTTAGTTGGT
GTCGCTTCAACACTGAGGCATAGAAGACATAATCGCTTGGGAGACAGAGC
AGCTACAGTGCTCTCTTTGTGTGCAGTGCACCTCAATGCCTTTCAACCGC
CTTACATACTCTATAAATGCGTTTCATCTTGTCCTCCATACCCCACAGGA
TCTTTTGCTAGCTAGTTTCGCTTTTCAATTTCCCCCTCGGGATAGTGTTG
CCGTTTGCTGCGTACAAAGGCAAAGCAGCTTCTCTACTAGCACACACCCA
CACCATGAGGATAAGCAATCAAATGTGTCTGGCTTCGGCATTAGCCATTG
GTTGCTCCGTCATGACATCAGCTTTCTTGATGCCCTTCCCCAATGCCAAG
GGACTGGCGCGGACACAGGTACGTCTTGGGGAGACGGAGTGGTGGTAGGC
GGTATCTTTCCCCGCATGTGTTCCACTTACCCTTTCAGACGCAATCTCTC
GTGGCCAGAGCCTCAACAGCCATATTCCTACGCATCCAAACAGGTATGGA
GCGCCGTGACGGACCGGACTCCGTCCGCCGTGGCTAGCAGCAGTGGCACG
GTGGCGCCCGTTCTGCCGGGCATGGCGGAGGACGAGGCTGACGACCCGAA
CGAGTACTTTGAGCCTGAGCCCGTGGATCCCACATTGGCCGAGCTCGAGG
CATTGAGCTCCGAGGAGCTGGCTCACGTACTACCAAACAGTGGGGGAAAG
ACGATCCAGCAGTGGTTGGAAGGGGACAAACCCACCTTTACCGACGGCTC
CTTGGTTGGGAACTGGGTGAAAGAGGCGCAACGCTTGCGTTTAATGCCCT
TCTTGGAGCGGGCTGAACACTTGAAGGCCCAATCCTTTGATGATTTGAAC
GCGTTCCGGGCCCGACAGGTGGAGTGGCGGGATATGTTGGAGTCCAAGGG
CGTGTTGGATGTGTACCAGGGCATGGCCGAGACGGGAATTACGGAGCTCT
CTGACGAGGCATACGCAGCCAAGCTGGCCGGTGCTCGGGAGCAGTATACG
GCAGAGATGGTGGCTCATGAGGAGGCCTTGTTGGCAAGTGTTGATGCTTT
GTGTAAGAATGCGCGTTTTGAGGGCTTTGCGGCGGATAACATGGTGCGGG
TGGTCATGAATGGGCGCATGGAGCCTCAAGAGGTGGAGGTGAAGGAGGGG
CCGGCCTTTGCGGATGCGCGTCTATTGGGCCTAGCGGTGGAGGCGGCGAT
GGACTCGGCGTACAAGCAGGCTGCCGAGTTTTACGAGGAGACGATGGCAA
CGGAGTATCTGTCCAAGGCGCAGAGCCCGACGGACGTGCAGGGCATTGTG
GAGGCGCTGGCTAAGAAGGAATTTTCTGTTGAGGAGGATGTGGTGGACAT
GTTCTAGGTGAATGAATAGGAAGAATGACAGAAGGAAGGGATTGATGGGT
TACAACAAGAATTATTTTTGACCAAATAACACGGCGCGAGAGAAGGCAAG
AGAGAAGGAAGAACAAATCAAGCCCCGAAAAGCCATAGAAGGAAAGGAAG
ATACGGACGTATCACAAATCAAAAGTGGAACCAAAGCCAACGTACACTTC
AGAAAATGGTGACATGCTTGATAAATCGGAAACACACATCGGATAGGGCC
ACATGTAGCCGATATGGAAAAGAAAGAAACGGCGACGACAGAAGAGGACA
CACTCGTGGTGATGAGCAAAGACTTCTGCGCCTTGGCTGTCCGTCAGTTA
ACATGGGTTTTCACATTTTCGAATGACAAAAAATACATCAATCTTTACAT
GCAAAGCTACAGTCCATTGTTTTCCGTCTTAGACACAACAAACACACACA
AAGGACGTACATCGCAAAAACACTAACACGTCCTCACCCCTATGTCTTCC
CTTCTGACTTCAGTTTCCCCCCCCCCTCAAACTCTCCTCCCGCAACGCCC
TCTCCAAAACCACCCTCCCCTCCTCCTCTGTCATGAAAGCTTCCAAGCCC
TTCGCCGAGGACGCCAATTGCGTTGGTAGCAGCTGCTTGACCAGCTCATC
GCTAACGACATCCCTCCTCTTTAGCACCACCTCGGAGAAATCTTCCAAGA
ACGCCCTGAGCTTCATCGGTGTCTCCCAACGATTCTTATGGTCTATGTCA
TAAAAATCAAACACCTGCTGTGGTCCTGCCCCTGCCCACCCCCTCTGGCC
CCCT
back to top

protein sequence of jgi.p|Nanoce1779_2|600577

>mRNA_7938-protein ID=mRNA_7938-protein|Name=jgi.p|Nanoce1779_2|600577|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MPFNRLTYSINAFHLVLHTPQDLLLASFAFQFPPRDSVAVCCVQRQSSFS
TSTHPHHEDKQSNVSGFGISHWLLRHDISFLDALPQCQGTGADTGTSWGD
GVVVGGIFPRMCSTYPFRRNLSWPEPQQPYSYASKQVWSAVTDRTPSAVA
SSSGTVAPVLPGMAEDEADDPNEYFEPEPVDPTLAELEALSSEELAHVLP
NSGGKTIQQWLEGDKPTFTDGSLVGNWVKEAQRLRLMPFLERAEHLKAQS
FDDLNAFRARQVEWRDMLESKGVLDVYQGMAETGITELSDEAYAAKLAGA
REQYTAEMVAHEEALLASVDALCKNARFEGFAADNMVRVVMNGRMEPQEV
EVKEGPAFADARLLGLAVEAAMDSAYKQAAEFYEETMATEYLSKAQSPTD
VQGIVEALAKKEFSVEEDVVDMF*
back to top

mRNA from alignment at scaffold_22:216959..219162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7938 ID=mRNA_7938|Name=jgi.p|Nanoce1779_2|600577|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at scaffold_22:216959..219162- (Nannochloropsis oceanica)
ATACGAAGAGTGCGCTCCTCCGCTCCTCCGCTCCTCCTCGTTTAGTTGGT
GTCGCTTCAACACTGAGGCATAGAAGACATAATCGCTTGGGAGACAGAGC
AGCTACAGTGCTCTCTTTGTGTGCAGTGCACCTCAATGCCTTTCAACCGC
CTTACATACTCTATAAATGCGTTTCATCTTGTCCTCCATACCCCACAGGA
TCTTTTGCTAGCTAGTTTCGCTTTTCAATTTCCCCCTCGGGATAGTGTTG
CCGTTTGCTGCGTACAAAGGCAAAGCAGCTTCTCTACTAGCACACACCCA
CACCATGAGGATAAGCAATCAAATGTGTCTGGCTTCGGCATTAGCCATTG
GTTGCTCCGTCATGACATCAGCTTTCTTGATGCCCTTCCCCAATGCCAAG
GGACTGGCGCGGACACAGGTACGTCTTGGGGAGACGGAGTGGTGGTAGGC
GGTATCTTTCCCCGCATGTGTTCCACTTACCCTTTCAGACGCAATCTCTC
GTGGCCAGAGCCTCAACAGCCATATTCCTACGCATCCAAACAGGTATGGA
GCGCCGTGACGGACCGGACTCCGTCCGCCGTGGCTAGCAGCAGTGGCACG
GTGGCGCCCGTTCTGCCGGGCATGGCGGAGGACGAGGCTGACGACCCGAA
CGAGTACTTTGAGCCTGAGCCCGTGGATCCCACATTGGCCGAGCTCGAGG
CATTGAGCTCCGAGGAGCTGGCTCACGTACTACCAAACAGTGGGGGAAAG
ACGATCCAGCAGTGGTTGGAAGGGGACAAACCCACCTTTACCGACGGCTC
CTTGGTTGGGAACTGGGTGAAAGAGGCGCAACGCTTGCGTTTAATGCCCT
TCTTGGAGCGGGCTGAACACTTGAAGGCCCAATCCTTTGATGATTTGAAC
GCGTTCCGGGCCCGACAGGTGGAGTGGCGGGATATGTTGGAGTCCAAGGG
CGTGTTGGATGTGTACCAGGGCATGGCCGAGACGGGAATTACGGAGCTCT
CTGACGAGGCATACGCAGCCAAGCTGGCCGGTGCTCGGGAGCAGTATACG
GCAGAGATGGTGGCTCATGAGGAGGCCTTGTTGGCAAGTGTTGATGCTTT
GTGTAAGAATGCGCGTTTTGAGGGCTTTGCGGCGGATAACATGGTGCGGG
TGGTCATGAATGGGCGCATGGAGCCTCAAGAGGTGGAGGTGAAGGAGGGG
CCGGCCTTTGCGGATGCGCGTCTATTGGGCCTAGCGGTGGAGGCGGCGAT
GGACTCGGCGTACAAGCAGGCTGCCGAGTTTTACGAGGAGACGATGGCAA
CGGAGTATCTGTCCAAGGCGCAGAGCCCGACGGACGTGCAGGGCATTGTG
GAGGCGCTGGCTAAGAAGGAATTTTCTGTTGAGGAGGATGTGGTGGACAT
GTTCTAGGTGAATGAATAGGAAGAATGACAGAAGGAAGGGATTGATGGGT
TACAACAAGAATTATTTTTGACCAAATAACACGGCGCGAGAGAAGGCAAG
AGAGAAGGAAGAACAAATCAAGCCCCGAAAAGCCATAGAAGGAAAGGAAG
ATACGGACGTATCACAAATCAAAAGTGGAACCAAAGCCAACGTACACTTC
AGAAAATGGTGACATGCTTGATAAATCGGAAACACACATCGGATAGGGCC
ACATGTAGCCGATATGGAAAAGAAAGAAACGGCGACGACAGAAGAGGACA
CACTCGTGGTGATGAGCAAAGACTTCTGCGCCTTGGCTGTCCGTCAGTTA
ACATGGGTTTTCACATTTTCGAATGACAAAAAATACATCAATCTTTACAT
GCAAAGCTACAGTCCATTGTTTTCCGTCTTAGACACAACAAACACACACA
AAGGACGTACATCGCAAAAACACTAACACGTCCTCACCCCTATGTCTTCC
CTTCTGACTTCAGTTTCCCCCCCCCCTCAAACTCTCCTCCCGCAACGCCC
TCTCCAAAACCACCCTCCCCTCCTCCTCTGTCATGAAAGCTTCCAAGCCC
TTCGCCGAGGACGCCAATTGCGTTGGTAGCAGCTGCTTGACCAGCTCATC
GCTAACGACATCCCTCCTCTTTAGCACCACCTCGGAGAAATCTTCCAAGA
ACGCCCTGAGCTTCATCGGTGTCTCCCAACGATTCTTATGGTCTATGTCA
TAAAAATCAAACACCTGCTGTGGTCCTGCCCCTGCCCACCCCCTCTGGCC
CCCT
back to top

Coding sequence (CDS) from alignment at scaffold_22:216959..219162-

>mRNA_7938 ID=mRNA_7938|Name=jgi.p|Nanoce1779_2|600577|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_22:216959..219162- (Nannochloropsis oceanica)
ATGCCTTTCAACCGCCTTACATACTCTATAAATGCGTTTCATCTTGTCCT
CCATACCCCACAGGATCTTTTGCTAGCTAGTTTCGCTTTTCAATTTCCCC
CTCGGGATAGTGTTGCCGTTTGCTGCGTACAAAGGCAAAGCAGCTTCTCT
ACTAGCACACACCCACACCATGAGGATAAGCAATCAAATGTGTCTGGCTT
CGGCATTAGCCATTGGTTGCTCCGTCATGACATCAGCTTTCTTGATGCCC
TTCCCCAATGCCAAGGGACTGGCGCGGACACAGGTACGTCTTGGGGAGAC
GGAGTGGTGGTAGGCGGTATCTTTCCCCGCATGTGTTCCACTTACCCTTT
CAGACGCAATCTCTCGTGGCCAGAGCCTCAACAGCCATATTCCTACGCAT
CCAAACAGGTATGGAGCGCCGTGACGGACCGGACTCCGTCCGCCGTGGCT
AGCAGCAGTGGCACGGTGGCGCCCGTTCTGCCGGGCATGGCGGAGGACGA
GGCTGACGACCCGAACGAGTACTTTGAGCCTGAGCCCGTGGATCCCACAT
TGGCCGAGCTCGAGGCATTGAGCTCCGAGGAGCTGGCTCACGTACTACCA
AACAGTGGGGGAAAGACGATCCAGCAGTGGTTGGAAGGGGACAAACCCAC
CTTTACCGACGGCTCCTTGGTTGGGAACTGGGTGAAAGAGGCGCAACGCT
TGCGTTTAATGCCCTTCTTGGAGCGGGCTGAACACTTGAAGGCCCAATCC
TTTGATGATTTGAACGCGTTCCGGGCCCGACAGGTGGAGTGGCGGGATAT
GTTGGAGTCCAAGGGCGTGTTGGATGTGTACCAGGGCATGGCCGAGACGG
GAATTACGGAGCTCTCTGACGAGGCATACGCAGCCAAGCTGGCCGGTGCT
CGGGAGCAGTATACGGCAGAGATGGTGGCTCATGAGGAGGCCTTGTTGGC
AAGTGTTGATGCTTTGTGTAAGAATGCGCGTTTTGAGGGCTTTGCGGCGG
ATAACATGGTGCGGGTGGTCATGAATGGGCGCATGGAGCCTCAAGAGGTG
GAGGTGAAGGAGGGGCCGGCCTTTGCGGATGCGCGTCTATTGGGCCTAGC
GGTGGAGGCGGCGATGGACTCGGCGTACAAGCAGGCTGCCGAGTTTTACG
AGGAGACGATGGCAACGGAGTATCTGTCCAAGGCGCAGAGCCCGACGGAC
GTGCAGGGCATTGTGGAGGCGCTGGCTAAGAAGGAATTTTCTGTTGAGGA
GGATGTGGTGGACATGTTCTAG
back to top
Synonyms
Publications