jgi.p|Nanoce1779_2|177362, mRNA_7935 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|177362
Unique NamemRNA_7935
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_22:212346..213158 -

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Properties
Property NameValue
TranscriptId177448
TrackFilteredModels2
ProteinId177362
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:212346..213158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177362gene_7935Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177362mRNA_7935-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7935CDS_7935Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7935 ID=mRNA_7935|Name=jgi.p|Nanoce1779_2|177362|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
TATCATGAATTCATTCGTTTTCTTCTTTCAGTTCTCGTCTGGCTTTATCC
CTACACCAACTCAATCTGCACGTCTCATCGTCTTCATCGACAGAGACCAT
CCTTTCTCTCGCACCAGGCCACCCACGTCATGGTTCCTGCCTCCCTTCTT
CTCTTTCTCTGTTTGCAAGACAAGGGGGAAATCGGAAGGGGGGGGAGGTC
CAAGACAGCTTTCTCATTTCCTTCTATAAACATGTCACTATGCTTGTCCT
GTGCTGACTATTTCTTCACTATTTGTGGATGTGCGCAACAGCGCGCTTAC
CTGTGTTTGTTGCGCTGTTATTTGGTTCGCGCTGTCCCTGCACTTGTCGC
ACTACTCATCGACCTATTTACCTCTGTCTTTCTATCTCTTCATTACATTT
TGGGCTCTGACCATTTTATTTTTTTGGCGTACTCCCGACTTCCCCCTCTT
TCTATTGTCTGCTGCTGCTGGTGTCCCCAATTTATGAGTGCCTGCACTTT
TTTCATGTGTCTCAACAGCCTTGTTTCTCGTCTTCCTTCACTCCAATTTT
CACGTGCTAAATACCGGAACGGCCAATTCGAAACGCACGACTGTAAACTC
ATGAAAAAGATGGTGATGGATATAAAGACACATTACACGATAGGTTGTGT
ATACGGATAGCCTGAGTATCACGCAACCCATTTATTCCTTCCCTTGGTGA
ATTAGCACTATTCCGCATCACAACTACACTGATTTGAGTAACAAAGCTTG
GGCGCCTATATTGCTCTGCCCTCAAGCTCATCTCTCCAGAAGAAATGTGT
ACACTCGGACATA
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protein sequence of jgi.p|Nanoce1779_2|177362

>mRNA_7935-protein ID=mRNA_7935-protein|Name=jgi.p|Nanoce1779_2|177362|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MVPASLLLFLCLQDKGEIGRGGRSKTAFSFPSINMSLCLSCADYFFTICG
CAQQRAYLCLLRCYLVRAVPALVALLIDLFTSVFLSLHYILGSDHFIFLA
YSRLPPLSIVCCCWCPQFMSACTFFMCLNSLVSRLPSLQFSRAKYRNGQF
ETHDCKLMKKMVMDIKTHYTIGCVYG*
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mRNA from alignment at scaffold_22:212346..213158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7935 ID=mRNA_7935|Name=jgi.p|Nanoce1779_2|177362|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at scaffold_22:212346..213158- (Nannochloropsis oceanica)
TATCATGAATTCATTCGTTTTCTTCTTTCAGTTCTCGTCTGGCTTTATCC
CTACACCAACTCAATCTGCACGTCTCATCGTCTTCATCGACAGAGACCAT
CCTTTCTCTCGCACCAGGCCACCCACGTCATGGTTCCTGCCTCCCTTCTT
CTCTTTCTCTGTTTGCAAGACAAGGGGGAAATCGGAAGGGGGGGGAGGTC
CAAGACAGCTTTCTCATTTCCTTCTATAAACATGTCACTATGCTTGTCCT
GTGCTGACTATTTCTTCACTATTTGTGGATGTGCGCAACAGCGCGCTTAC
CTGTGTTTGTTGCGCTGTTATTTGGTTCGCGCTGTCCCTGCACTTGTCGC
ACTACTCATCGACCTATTTACCTCTGTCTTTCTATCTCTTCATTACATTT
TGGGCTCTGACCATTTTATTTTTTTGGCGTACTCCCGACTTCCCCCTCTT
TCTATTGTCTGCTGCTGCTGGTGTCCCCAATTTATGAGTGCCTGCACTTT
TTTCATGTGTCTCAACAGCCTTGTTTCTCGTCTTCCTTCACTCCAATTTT
CACGTGCTAAATACCGGAACGGCCAATTCGAAACGCACGACTGTAAACTC
ATGAAAAAGATGGTGATGGATATAAAGACACATTACACGATAGGTTGTGT
ATACGGATAGCCTGAGTATCACGCAACCCATTTATTCCTTCCCTTGGTGA
ATTAGCACTATTCCGCATCACAACTACACTGATTTGAGTAACAAAGCTTG
GGCGCCTATATTGCTCTGCCCTCAAGCTCATCTCTCCAGAAGAAATGTGT
ACACTCGGACATA
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Coding sequence (CDS) from alignment at scaffold_22:212346..213158-

>mRNA_7935 ID=mRNA_7935|Name=jgi.p|Nanoce1779_2|177362|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_22:212346..213158- (Nannochloropsis oceanica)
ATGGTTCCTGCCTCCCTTCTTCTCTTTCTCTGTTTGCAAGACAAGGGGGA
AATCGGAAGGGGGGGGAGGTCCAAGACAGCTTTCTCATTTCCTTCTATAA
ACATGTCACTATGCTTGTCCTGTGCTGACTATTTCTTCACTATTTGTGGA
TGTGCGCAACAGCGCGCTTACCTGTGTTTGTTGCGCTGTTATTTGGTTCG
CGCTGTCCCTGCACTTGTCGCACTACTCATCGACCTATTTACCTCTGTCT
TTCTATCTCTTCATTACATTTTGGGCTCTGACCATTTTATTTTTTTGGCG
TACTCCCGACTTCCCCCTCTTTCTATTGTCTGCTGCTGCTGGTGTCCCCA
ATTTATGAGTGCCTGCACTTTTTTCATGTGTCTCAACAGCCTTGTTTCTC
GTCTTCCTTCACTCCAATTTTCACGTGCTAAATACCGGAACGGCCAATTC
GAAACGCACGACTGTAAACTCATGAAAAAGATGGTGATGGATATAAAGAC
ACATTACACGATAGGTTGTGTATACGGATAG
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Synonyms
Publications