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Properties
| Property Name | Value |
|---|
| TranscriptId | 559255 |
| Track | FilteredModels2 |
| ProteinId | 559169 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:206355..209574 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7933 ID=mRNA_7933|Name=jgi.p|Nanoce1779_2|559169|organism=Nannochloropsis oceanica|type=mRNA|length=2630bp
GCAACGCAGCTCCAAGAATGAATTAAGGCCTTCCAAACGGCAGCCTCGCG
CTAAATTTGGTTCTGCAATCTCAGAGAAGCAACCGTGCTCGCATGGGCTG
GATGACTGACGCGGCGGATGGTTGAAGGGAAAGGAATTACAAAGGATTAC
ATGCAATACGGTAAGGGTGAAAATGCCCATGGTACCGTGCGAGATCAATG
GTTTGAGGACACCCGCTCTTTTTTTTTGAATCATTTGATCTCAAGTGACT
GGTTAATGACATGCTCTTAGTCAGTATCTTGCCACTGCAGTGGGAGCGGG
AGTGAGCACTTCAGGAAGCAGGGAAAGTGGAAGCAAGGAGCGAAAGCCAC
GGAGAGGAAGACAAAGCCATCACACTCACAGTCACCATCGGAAAGGTTGT
TTGGTTAGGAGCTCAGCTCTCGCCTCTGCATCATCATCTCCAGTGCTCTT
TCACGGCTCCGCGCCTGCCCCCGCATGCCGTGGGCCGTTTGCCCTGCTCG
AAGTGTGTATGTGCATCGTCCTTCACCCTCCACTCACGTGCACACCACCC
GCTCAACTCTCGTCATCTCTTCCCACACCGACACAGCATCAACCTTTGCA
ACTATCCAGCCATACCAAGCATCATGAACGGGCACGCCAATTGCAACGGC
AGTACCAACGGAGGCGCCTCCTCCTCCTCCTCCACCACCTCGGCAGGGGC
CGTAGGCACCTTCCGTGTAAAGGCCGGTTTGGCCCAAATGCTCAAGGGCG
GCGTTATTATGGATGTGGTAGACGTGGAGCAAGCTAGGATCGCTGAGGCC
GCAGGGGCCGTGGCCGTCATGGCCCTGGAGCGCATCCCTGCTGACATTCG
ACGGGATGGGGGCGTGGCCCGCATGAGCGACCCCTCTATGATCAAGGAGA
TCAAAGCCGCGGTGACTATTCCCGTGATGGCGAAGGCTCGTATCGGCCAT
TTCGTGGAGGCCCAAATCCTGGAAGCAATCGAAGTGGACTACATCGATGA
GTCCGAGGTCTTGACCATGGCGGACGAGGAGAATCATATAAACAAGAACA
AGTTCAAGGTGCCCTTCGTATGCGGCTGCCGGGACTTAGGAGAGGCGTTG
CGCCGGGTGGCAGAGGGCGCGGCTATGCTCCGCACAAAGGGGGAGGCAGG
AACGGGGAATGTGGTAGAAGCAGTGAGGCATGCGCGGACCGTGCAACGGG
AGATCAGACGACTCACCTCCATGGACGAAGACGAGCTCTTCGTGTACGCC
AAGGACATCCGTGCCCCGCTGGAGCTGGTGCAGGAGGTAGCACGCACAGG
AAGACTGCCGGTGGTCAATTTCGCGGCGGGGGGGGTAGCAACCCCAGCGG
ACGCAGCGCTGATGATGCAGTTGGGCTTGGACGGGGTTTTTGTGGGCTCG
GGCATTTTCAAGTCCACGGAGCCGGAGAAGAGGGCTCGGGCGATCGTCCA
GGCGGTGACTCACTTTAGGAACGCGGCTGTCTTGGCGGAGGTGAGCACAA
ACCTGGGGGCACCAATGGTGGGGATCTCGGACATAAAGGGCGACGCGGTG
AATTTCAGGGACAGGGAGGGAGGGGTGGTGGGAGGGGGGGATGGGGTACC
GCCCAAGAAGACGTTGCATGGCGCCACAGAGACACAGTTGTATGGGAGTA
GTTGGAAGGCGGGGCAGGCGGGGCATTAAGGGGAAAGAGAGAGAGAGAGA
GTGGCGGAGATGAGTGAAGGAGTTCCACATGTATACCCACGGACTTGGGA
GCTGGAGCGATGGGGCAAAATAGAAATGGAAAGCAAGGAAAGGGGAGACA
GGGGGATGCAGGTGCGACGCGGAGGGTTATGAAATGGTAAGGAGGATGGG
GACGAGGACGACTACAAGGTCGACATCCTGAGCGATAGAAAAAGTTCAAG
CATAATGACGGGGAAGGGATATTGAGAAGAAATGGGGCAGTAGTAGTCCC
GGGCTCAGTGCTCTTGCAGATAGGATAATTTTGTTGTTGCTCTTGTTAGA
TTTATTTAACACCAGAAAAGAAGGAGAAGAAGGACGGCGACAGAAAGGAT
GACTCAGTTTTCGTATCTGCCACTGTGTGGCCTGCCTTCGCATTTTATAG
AAATACAAGGAGAGATACAAGTAGGGACATCCGAATGTACGGCTATTCTC
CCTTGTAATCTGTTTGCTGTGACATTCATGCTGGGGGGAAGATGGAGAGG
GCTGATTCAAGGAACAGCAAAAGATAGGTGGTGCGAATGAATTCAACAGT
CTCCCCATGCCCAACTTAGGTTGAAGTGTCGAGCTAAGAGAGAGGCGAGG
GGAGAGAGAGGAAGGGGGAGAAATGCACGAAAAAGGCCGAGACGCTTGCG
CGTGTTGGCGAGTGTATGCGATTGTGTATGTGTGTGCGTCTGACGGACAA
GTTAGGAAAGAGCAAGACAAAGGCCAGTGTGTGGATCAAGAGAAGTGGGA
GACGTGTGAGAGGGGGGGGTAAAGTCGGGTTCAGAGGGAGGGACCAGCGG
GAAGTCGAATCAAGCGTCGAACCGTCTCCGAGCAAAAGCCAGTTTCCCTT
TTCCATATATAGGTGTGCTACAATCGATATGATAAAACGAAATAGAGAAC
GAAGCATGAAATTAAAACACAATAGTTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|559169 >mRNA_7933-protein ID=mRNA_7933-protein|Name=jgi.p|Nanoce1779_2|559169|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MNGHANCNGSTNGGASSSSSTTSAGAVGTFRVKAGLAQMLKGGVIMDVVD
VEQARIAEAAGAVAVMALERIPADIRRDGGVARMSDPSMIKEIKAAVTIP
VMAKARIGHFVEAQILEAIEVDYIDESEVLTMADEENHINKNKFKVPFVC
GCRDLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARTVQREIRRLTSM
DEDELFVYAKDIRAPLELVQEVARTGRLPVVNFAAGGVATPADAALMMQL
GLDGVFVGSGIFKSTEPEKRARAIVQAVTHFRNAAVLAEVSTNLGAPMVG
ISDIKGDAVNFRDREGGVVGGGDGVPPKKTLHGATETQLYGSSWKAGQAG
H* back to topmRNA from alignment at scaffold_22:206355..209574- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7933 ID=mRNA_7933|Name=jgi.p|Nanoce1779_2|559169|organism=Nannochloropsis oceanica|type=mRNA|length=3220bp|location=Sequence derived from alignment at scaffold_22:206355..209574- (Nannochloropsis oceanica)
GCAACGCAGCTCCAAGAATGAATTAAGGCCTTCCAAACGGCAGCCTCGCG
CTAAATTTGGTTCTGCAATCTCAGAGAAGCAACCGTGCTCGCATGGGCTG
GATGACTGACGCGGCGGATGGTTGAAGGGAAAGGAATTACAAAGGATTAC
ATGCAATACGGTAAGGGTGAAAATGCCCATGGTACCGTGCGAGATCAATG
GTTTGAGGACACCCGCTCTTTTTTTTTGAATCATTTGATCTCAAGTGACT
GGTTAATGACATGCTCTTAGTCAGTATCTTGCCACTGCAGTGGGAGCGGG
AGTGAGCACTTCAGGAAGCAGGGAAAGTGGAAGCAAGGAGCGAAAGCCAC
GGAGAGGAAGACAAAGCCATCACACTCACAGTCACCATCGGAAAGGTTGT
TTGGTTAGGAGCTCAGCTCTCGCCTCTGCATCATCATCTCCAGTGCTCTT
TCACGGCTCCGCGCCTGCCCCCGCATGCCGTGGGCCGTTTGCCCTGCTCG
AAGTGTGTATGTGCATCGTCCTTCACCCTCCACTCACGTGCACACCACCC
GCTCAACTCTCGTCATCTCTTCCCACACCGACACAGCATCAACCTTTGCA
ACTATCCAGCCATACCAAGCATCATGAACGGGCACGCCAATTGCAACGGC
AGTACCAACGGAGGCGCCTCCTCCTCCTCCTCCACCACCTCGGCAGGGGC
CGTAGGCACCTTCCGTGTAAAGGCCGGTTTGGCCCAAATGCTCAAGGGCG
GCGTTATTATGGGTACGTGGATGTTTGGGATTTATGATGGAGGGGTGGAG
GAGATGCACCTGCGTTGGGAAGGGCCCCGCTCGATAGTGTCCTTGCGTGC
AGTCGCTGAGTTGGCAGTCATTCACAGCGCACCCCCGGACCGGCTCACGA
GGTTTGGAGAGGAAGTATTGGACCTCGCCTCAGTCATCGATGGCCATTTT
TGGTCTTACGCCCACCCTTCCACCCATGATCCCTCCCTGTCATGTCCGCC
ATCTTCAGTAAGTCGTCAGCACCTACTCACTTCAACTCTTTCCCGCCTTC
CCCTTTCCTAAAACAAACAGATGTGGTAGACGTGGAGCAAGCTAGGATCG
CTGAGGCCGCAGGGGCCGTGGCCGTCATGGCCCTGGAGCGCATCCCTGCT
GACATTCGACGGGATGGGGGCGTGGCCCGCATGAGCGACCCCTCTATGAT
CAAGGAGATCAAAGCCGCGGTGACTATTCCCGTGATGGCGAAGGTGAGTG
AGGGAAGATAGACGGAGAAGGAGGGAGAAGAAGGCAAAGGGGGCAGAATG
GAGATGAAGCCAAGGGCTGTGAGGAAAGATACATGAAACACCATTTTAGC
AGATAGGGACATCAGAGCGCGACATGTCGTCGCAAGTGCTGATTTCATAG
ACTTTACGACTGAGCCACGGAAATAAAAGAGGAGATTTTATTCGCAAAAT
ATCGCCACCGCACTCCACCTTCAGTCACACACTCTTTTTACCTCCGATAT
TCCTACCCCTCTCTTCTCACGTCAGGCTCGTATCGGCCATTTCGTGGAGG
CCCAAATCCTGGAAGCAATCGAAGTGGACTACATCGATGAGTCCGAGGTC
TTGACCATGGCGGACGAGGAGAATCATATAAACAAGAACAAGTTCAAGGT
GCCCTTCGTATGCGGCTGCCGGGACTTAGGAGAGGCGTTGCGCCGGGTGG
CAGAGGGCGCGGCTATGCTCCGCACAAAGGGGGAGGCAGGAACGGGGAAT
GTGGTAGAAGCAGTGAGGCATGCGCGGACCGTGCAACGGGAGATCAGACG
ACTCACCTCCATGGACGAAGACGAGCTCTTCGTGTACGCCAAGGACATCC
GTGCCCCGCTGGAGCTGGTGCAGGAGGTAGCACGCACAGGAAGACTGCCG
GTGGTCAATTTCGCGGCGGGGGGGGTAGCAACCCCAGCGGACGCAGCGCT
GATGATGCAGTTGGGCTTGGACGGGGTTTTTGTGGGCTCGGGCATTTTCA
AGTCCACGGAGCCGGAGAAGAGGGCTCGGGCGATCGTCCAGGCGGTGACT
CACTTTAGGAACGCGGCTGTCTTGGCGGAGGTGAGCACAAACCTGGGGGC
ACCAATGGTGGGGATCTCGGACATAAAGGGCGACGCGGTGAATTTCAGGG
ACAGGGAGGGAGGGGTGGTGGGAGGGGGGGATGGGGTACCGCCCAAGAAG
ACGTTGCATGGCGCCACAGAGACACAGTTGTATGGGAGTAGTTGGAAGGC
GGGGCAGGCGGGGCATTAAGGGGAAAGAGAGAGAGAGAGAGTGGCGGAGA
TGAGTGAAGGAGTTCCACATGTATACCCACGGACTTGGGAGCTGGAGCGA
TGGGGCAAAATAGAAATGGAAAGCAAGGAAAGGGGAGACAGGGGGATGCA
GGTGCGACGCGGAGGGTTATGAAATGGTAAGGAGGATGGGGACGAGGACG
ACTACAAGGTCGACATCCTGAGCGATAGAAAAAGTTCAAGCATAATGACG
GGGAAGGGATATTGAGAAGAAATGGGGCAGTAGTAGTCCCGGGCTCAGTG
CTCTTGCAGATAGGATAATTTTGTTGTTGCTCTTGTTAGATTTATTTAAC
ACCAGAAAAGAAGGAGAAGAAGGACGGCGACAGAAAGGATGACTCAGTTT
TCGTATCTGCCACTGTGTGGCCTGCCTTCGCATTTTATAGAAATACAAGG
AGAGATACAAGTAGGGACATCCGAATGTACGGCTATTCTCCCTTGTAATC
TGTTTGCTGTGACATTCATGCTGGGGGGAAGATGGAGAGGGCTGATTCAA
GGAACAGCAAAAGATAGGTGGTGCGAATGAATTCAACAGTCTCCCCATGC
CCAACTTAGGTTGAAGTGTCGAGCTAAGAGAGAGGCGAGGGGAGAGAGAG
GAAGGGGGAGAAATGCACGAAAAAGGCCGAGACGCTTGCGCGTGTTGGCG
AGTGTATGCGATTGTGTATGTGTGTGCGTCTGACGGACAAGTTAGGAAAG
AGCAAGACAAAGGCCAGTGTGTGGATCAAGAGAAGTGGGAGACGTGTGAG
AGGGGGGGGTAAAGTCGGGTTCAGAGGGAGGGACCAGCGGGAAGTCGAAT
CAAGCGTCGAACCGTCTCCGAGCAAAAGCCAGTTTCCCTTTTCCATATAT
AGGTGTGCTACAATCGATATGATAAAACGAAATAGAGAACGAAGCATGAA
ATTAAAACACAATAGTTTTC back to topCoding sequence (CDS) from alignment at scaffold_22:206355..209574- >mRNA_7933 ID=mRNA_7933|Name=jgi.p|Nanoce1779_2|559169|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_22:206355..209574- (Nannochloropsis oceanica)
GCTCGTATCGGCCATTTCGTGGAGGCCCAAATCCTGGAAGCAATCGAAGT
GGACTACATCGATGAGTCCGAGGTCTTGACCATGGCGGACGAGGAGAATC
ATATAAACAAGAACAAGTTCAAGGTGCCCTTCGTATGCGGCTGCCGGGAC
TTAGGAGAGGCGTTGCGCCGGGTGGCAGAGGGCGCGGCTATGCTCCGCAC
AAAGGGGGAGGCAGGAACGGGGAATGTGGTAGAAGCAGTGAGGCATGCGC
GGACCGTGCAACGGGAGATCAGACGACTCACCTCCATGGACGAAGACGAG
CTCTTCGTGTACGCCAAGGACATCCGTGCCCCGCTGGAGCTGGTGCAGGA
GGTAGCACGCACAGGAAGACTGCCGGTGGTCAATTTCGCGGCGGGGGGGG
TAGCAACCCCAGCGGACGCAGCGCTGATGATGCAGTTGGGCTTGGACGGG
GTTTTTGTGGGCTCGGGCATTTTCAAGTCCACGGAGCCGGAGAAGAGGGC
TCGGGCGATCGTCCAGGCGGTGACTCACTTTAGGAACGCGGCTGTCTTGG
CGGAGGTGAGCACAAACCTGGGGGCACCAATGGTGGGGATCTCGGACATA
AAGGGCGACGCGGTGAATTTCAGGGACAGGGAGGGAGGGGTGGTGGGAGG
GGGGGATGGGGTACCGCCCAAGAAGACGTTGCATGGCGCCACAGAGACAC
AGTTGTATGGGAGTAGTTGGAAGGCGGGGCAGGCGGGGCATTAAATGTGG
TAGACGTGGAGCAAGCTAGGATCGCTGAGGCCGCAGGGGCCGTGGCCGTC
ATGGCCCTGGAGCGCATCCCTGCTGACATTCGACGGGATGGGGGCGTGGC
CCGCATGAGCGACCCCTCTATGATCAAGGAGATCAAAGCCGCGGTGACTA
TTCCCGTGATGGCGAAGATGAACGGGCACGCCAATTGCAACGGCAGTACC
AACGGAGGCGCCTCCTCCTCCTCCTCCACCACCTCGGCAGGGGCCGTAGG
CACCTTCCGTGTAAAGGCCGGTTTGGCCCAAATGCTCAAGGGCGGCGTTA
TTATGGGCTCGTATCGGCCATTTCGTGGAGGCCCAAATCCTGGAAGCAAT
CGAAGTGGACTACATCGATGAGTCCGAGGTCTTGACCATGGCGGACGAGG
AGAATCATATAAACAAGAACAAGTTCAAGGTGCCCTTCGTATGCGGCTGC
CGGGACTTAGGAGAGGCGTTGCGCCGGGTGGCAGAGGGCGCGGCTATGCT
CCGCACAAAGGGGGAGGCAGGAACGGGGAATGTGGTAGAAGCAGTGAGGC
ATGCGCGGACCGTGCAACGGGAGATCAGACGACTCACCTCCATGGACGAA
GACGAGCTCTTCGTGTACGCCAAGGACATCCGTGCCCCGCTGGAGCTGGT
GCAGGAGGTAGCACGCACAGGAAGACTGCCGGTGGTCAATTTCGCGGCGG
GGGGGGTAGCAACCCCAGCGGACGCAGCGCTGATGATGCAGTTGGGCTTG
GACGGGGTTTTTGTGGGCTCGGGCATTTTCAAGTCCACGGAGCCGGAGAA
GAGGGCTCGGGCGATCGTCCAGGCGGTGACTCACTTTAGGAACGCGGCTG
TCTTGGCGGAGGTGAGCACAAACCTGGGGGCACCAATGGTGGGGATCTCG
GACATAAAGGGCGACGCGGTGAATTTCAGGGACAGGGAGGGAGGGGTGGT
GGGAGGGGGGGATGGGGTACCGCCCAAGAAGACGTTGCATGGCGCCACAG
AGACACAGTTGTATGGGAGTAGTTGGAAGGCGGGGCAGGCGGGGCATTAA
ATGTGGTAGACGTGGAGCAAGCTAGGATCGCTGAGGCCGCAGGGGCCGTG
GCCGTCATGGCCCTGGAGCGCATCCCTGCTGACATTCGACGGGATGGGGG
CGTGGCCCGCATGAGCGACCCCTCTATGATCAAGGAGATCAAAGCCGCGG
TGACTATTCCCGTGATGGCGAAGATGAACGGGCACGCCAATTGCAACGGC
AGTACCAACGGAGGCGCCTCCTCCTCCTCCTCCACCACCTCGGCAGGGGC
CGTAGGCACCTTCCGTGTAAAGGCCGGTTTGGCCCAAATGCTCAAGGGCG
GCGTTATTATGGGCTCGTATCGGCCATTTCGTGGAGGCCCAAATCCTGGA
AGCAATCGAAGTGGACTACATCGATGAGTCCGAGGTCTTGACCATGGCGG
ACGAGGAGAATCATATAAACAAGAACAAGTTCAAGGTGCCCTTCGTATGC
GGCTGCCGGGACTTAGGAGAGGCGTTGCGCCGGGTGGCAGAGGGCGCGGC
TATGCTCCGCACAAAGGGGGAGGCAGGAACGGGGAATGTGGTAGAAGCAG
TGAGGCATGCGCGGACCGTGCAACGGGAGATCAGACGACTCACCTCCATG
GACGAAGACGAGCTCTTCGTGTACGCCAAGGACATCCGTGCCCCGCTGGA
GCTGGTGCAGGAGGTAGCACGCACAGGAAGACTGCCGGTGGTCAATTTCG
CGGCGGGGGGGGTAGCAACCCCAGCGGACGCAGCGCTGATGATGCAGTTG
GGCTTGGACGGGGTTTTTGTGGGCTCGGGCATTTTCAAGTCCACGGAGCC
GGAGAAGAGGGCTCGGGCGATCGTCCAGGCGGTGACTCACTTTAGGAACG
CGGCTGTCTTGGCGGAGGTGAGCACAAACCTGGGGGCACCAATGGTGGGG
ATCTCGGACATAAAGGGCGACGCGGTGAATTTCAGGGACAGGGAGGGAGG
GGTGGTGGGAGGGGGGGATGGGGTACCGCCCAAGAAGACGTTGCATGGCG
CCACAGAGACACAGTTGTATGGGAGTAGTTGGAAGGCGGGGCAGGCGGGG
CATTAAATGTGGTAGACGTGGAGCAAGCTAGGATCGCTGAGGCCGCAGGG
GCCGTGGCCGTCATGGCCCTGGAGCGCATCCCTGCTGACATTCGACGGGA
TGGGGGCGTGGCCCGCATGAGCGACCCCTCTATGATCAAGGAGATCAAAG
CCGCGGTGACTATTCCCGTGATGGCGAAGATGAACGGGCACGCCAATTGC
AACGGCAGTACCAACGGAGGCGCCTCCTCCTCCTCCTCCACCACCTCGGC
AGGGGCCGTAGGCACCTTCCGTGTAAAGGCCGGTTTGGCCCAAATGCTCA
AGGGCGGCGTTATTATGG back to top
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