jgi.p|Nanoce1779_2|600553, mRNA_7930 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600553
Unique Name	mRNA_7930
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1900
Alignment location	scaffold_22:199751..203363 -

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Properties


Property Name	Value
TranscriptId	600639
Track	FilteredModels2
ProteinId	600553

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:199751..203363 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600553	gene_7930	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600553	mRNA_7930-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7930	CDS_7930	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:199751..203363-
coding sequence from alignment at scaffold_22:199751..203363-

mRNA sequence

>mRNA_7930 ID=mRNA_7930|Name=jgi.p|Nanoce1779_2|600553|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp
CAGCAGCAGCAGCAGCAGCAGCAGTCCTCCTCCTCCTCCTCCTCCTCCAC
CACCACCACCACCACCACCAAGCCCTTGCGAAGCCTCCCTCAGCCCCCCC
CCGAGGCCCGTGACAAGAAGAATGAGGACCTTGACATTTCCCTCTCCGCC
TCCTCCGCCTCAATTATCGACGCCAGTGACAGCAGTGGCAGCAACAAGCA
CCCCATTACCTCGAAAGGCAGCAAGAAGGCGGGAGGAGAAGGCAAAACTA
CCTCCCTACGTCGCGCCCGCTCCAGTGGCAAGGTCCAATCAATCACCGCG
ATGGTCGTCCCAGCTGACCTGCTTGATCCCGACTCCATGAATTTCAGCCC
GCGTATCCCCATCTTCCCTTCCGGCGCTGGCCTCCCCCTCGGCCTAAACG
TCAGTTCTAGCACATTTACCCCGCACCTCACCCCGCACCCCCACAGCCAC
AGCAAGGGCGGATATTTCACTTCCCCCTATGCGGTGATGCCTCTTCCCCC
CCATCTTTACCGCCACCCTGCTGGTGCTGCTGCTGTTGATGCTGCGACCT
ACCATCACCAGTACCTGCAGCAGCAGCAGCAGGTGTATGCCCTCTCCCCC
TATCACCACTCCAGCCACCAAGCCCACCACCAACGCCACCCCTCCCTCCC
CTCCGTCGGAAATCACTCTCACGGGCACCCACGCAGGCAGTGTCTCCCGG
ATCTTCCCTCCGTCCCTCCTTCCACTGTTGTCTCTGCACCACACATGCCC
TCCCCCCCTGTGCACACTCATTCGACAATGGGACAAGAGCAGATAGAAGA
GGTGCTACGCCATCAGTTACATTTTTATTTTTCGCCCGAGAACCTAGCGA
ATGACTTTTATCTGCGTGGAAAGATGGATAGTGAGGGATGGGTGCCTTTT
GCGGAGGTGGCTCAATTTAAGCGAGTAAAGCACTTATTGGGGTTGTTGGG
GATGGGAGGAGGGGTGGAGCGAGGGAAAGAGGGTCGTCACAAGGCGGCCG
TAACGGACTTGTCGTTGTTGATTAAGATTGCAGCTGATTCGGACGAGGTG
GAAGTGCGGATGGTGATGCAGGGGGATGACGGGAGGAGAGAAGGGAAGGA
AGGGAAAGATGGGAAAGGAAGCTTTATGTACAAGATTCGGCCGAGACACG
AGCCGTTGCAATGGGTTTTGCCCGCGACGGAGTGACAGAATGACCGTTGC
GGTGTGCGTGTCTCCGTGTGACGTGTGTGACTCAATGGGGTGTGGTAAAG
TTCGCGTGAGCGAGAGAGAGACAGAGAGACAGAAAGGCAGAGAGAGAGGC
TCAGGACAAGCAGAAGCAGATGATGACCGCCCATCTTCTTCTTCGTCCTT
TTTCAATAGTTTAGGTACCCACTGGTTTCTCGTGTTGTCTTGTCTTGGCC
TCATGTTTTGATCATAAATAGTAGTACTGGTAGTAGTGATAAGAGGAGGA
GGAAAAGAAGATGGACGGAGAAAGGGATAGGAGGGTGGGAGGAAGGAGAT
GTCTGAGGCAATTTAGAACTCAATTGTATTTTTTCCAGTCTATGGAATAC
CCTTAACGTTTTTATATTATACTGCAAAATATAACTGGTCAAGCCAACAT
GCCACTTAAATGAAAGCACTAACTCCAGCACAAGATCAACTGTGGAACGA
TTAGACCTGGAGGATGAGATGAGACAAGAAAGTAGAAGAACAAGTAGAAC
AGGAAATTGACGATGAGGGAGAAGAAATGAGAGTAGAAGAGGAAGCGAGA
GAAGAAGAATACGAGGAAAATGTAGAAGTTGGAATTGACGGCAAAAAAGT
AGCGCCAGTACGAGATCAAAAGCGATGGAAGAGAGATGAATAAAGGGAGA
ATGATGACGAAGGGTGAAAAGAAAGTACCGGTCTAACAGTGGGCTTGCTA

protein sequence of jgi.p|Nanoce1779_2|600553

>mRNA_7930-protein ID=mRNA_7930-protein|Name=jgi.p|Nanoce1779_2|600553|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MVVPADLLDPDSMNFSPRIPIFPSGAGLPLGLNVSSSTFTPHLTPHPHSH
SKGGYFTSPYAVMPLPPHLYRHPAGAAAVDAATYHHQYLQQQQQVYALSP
YHHSSHQAHHQRHPSLPSVGNHSHGHPRRQCLPDLPSVPPSTVVSAPHMP
SPPVHTHSTMGQEQIEEVLRHQLHFYFSPENLANDFYLRGKMDSEGWVPF
AEVAQFKRVKHLLGLLGMGGGVERGKEGRHKAAVTDLSLLIKIAADSDEV
EVRMVMQGDDGRREGKEGKDGKGSFMYKIRPRHEPLQWVLPATE*

mRNA from alignment at scaffold_22:199751..203363-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7930 ID=mRNA_7930|Name=jgi.p|Nanoce1779_2|600553|organism=Nannochloropsis oceanica|type=mRNA|length=3613bp|location=Sequence derived from alignment at scaffold_22:199751..203363- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAAGGTGAGAAAGGGAAAGC
GTGTTACGAAAAGGCACGTCAAGCGGTGTTTCACTTGAGCAAGCGGTTTC
AGGCGTGGAATGTTTCCCTTCCTTCCGTCTTTTTGTCGACTTGCCAGCGT
GGGGTTCGTTTGGCCAGATGTTTCCTGGCGACAGCAGCGGCAGGAGGAGG
GAAGAGAAAGCAAGGAGCAAGTGCAGCCACAGGAGTAGCGGCGCAGGAGC
AGAAGTTGTTTTCAGGATCCTTCTGGCCTGCTCGGTCAGAGGCAGCAGCG
AAGGGAGGCAAAGCACAGACGCAGCAGCAGCAGCAGAAAAAGAAGGGAGA
AATGGGTGGTGGGAATGGAGAAAGTTGCAGCTTGAGTCGTAGCAGGAGCA
GCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAAGCGTCG
CAAGTCGCCCGAAAAGCGTAGCAAGCAGCAGCAGAGGCAGCAGGAGTTGG
CCAAGGAGGAGGCCAAACCCTCCGTCGTTCTTGTCCCTTCAGAATCCGTA
CACATCACAGAGGAGAGGGAGGAAGTGATGGGGGAGGTAACTGTTACGGT
CATTGAGGCTCGAGTGTCGTCCGGGGGGAATAAACAGCAGGACGAAGGGG
AGACGGAGGAGAAGGAAAGGACGGAGGGAGCGGCTATAACGCCCCTGCCC
TTAGAGTCGAAGCGATTGCAGGTAGTGGACAAGCAGAAGAAAGAAATTGT
GGCTTCGTCGTCGGCATGTGGGTTGGGTATGGGCAAAAAGGCAGATAATG
AGGATGATACAGGAGCTTCGGCAAGTCCGCCCTCATTTTGTCCTAGGGGG
CATGAGCCAGGGAATGAGGAGGGGAGAGAAGAGGAGGAGGAGGAGGAAGA
AAAGGGAGTGAAAAAGGAAGAGCAGTGTAAAGAGAGGGCCATGACTGATG
AGTTGTGTAAGATGCGCGGCTCGCAGGAGAAGATGGAAGATGAGTCTATG
CGCGAGAGCGCATCTGACGAGATGGAGGGAGGAGTGTGTGTGCCAACGGC
TGCCGAGATGCAACAAGAGCAACAGCAGAAGTACTACCACCTTCATGACG
AGGAAAAGTACGAGGAGGATGAGATGGACGTGTCGGCAAAGGCAGGAAGC
ATCCCATGCTCACTGGTGCGCGAGGAGGAAGAAACCAAAGCTTTCTCCTC
AGTTCCTTTCTTGTCCTCGTCCTCGTCCTCGTCTTCGTCCTCGTCCTCGT
CCTCGCCTCCATCCCCTCTGGTAACAATCACTATTCCTGCAGCGCTTCAC
CCTCTCGTTGAACAGATGTTGCAGTACAGTCGCCGGCAGGAGTGTGCACA
GCACCCGCACCAGCGCCAGCACCAAGAGCAGCAGTGGTCGGTGCAGCAGT
GGTCGGTGCAGCGGGTCAAAGAGTGCAAGCCTGTGGCGTCTATACCAACC
ACAGCCTACAGCGCCATGGGGACCTCTGGCGACATCAGTGGCAACAGCAG
CAATACCAGCAATACCAGCACCAAGAAGAAGAAGGCGGAGAAGAACAAAA
ACAAGGCTGCCATTGCCACTGCCAGCATCCATAAACAGCAGCAGCAGGAT
GTTATGATGAACCGCAAGGCCCACAACAGCAGCTCCAGTCGAACAACGAC
TCCCTCCATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCACCACCACCACCACCACCACCAAGCCCTTGCGAAGCCTC
CCTCAGCCCCCCCCCGAGGCCCGTGACAAGAAGAATGAGGACCTTGACAT
TTCCCTCTCCGCCTCCTCCGCCTCAATTATCGACGCCAGTGACAGCAGTG
GCAGCAACAAGCACCCCATTACCTCGAAAGGCAGCAAGAAGGCGGGAGGA
GAAGGCAAAACTACCTCCCTACGTCGCGCCCGCTCCAGTGGCAAGGTCCA
ATCAATCACCGCGATGGTCGTCCCAGCTGACCTGCTTGATCCCGACTCCA
TGAATTTCAGCCCGCGTATCCCCATCTTCCCTTCCGGCGCTGGCCTCCCC
CTCGGCCTAAACGTCAGTTCTAGCACATTTACCCCGCACCTCACCCCGCA
CCCCCACAGCCACAGCAAGGGCGGATATTTCACTTCCCCCTATGCGGTGA
TGCCTCTTCCCCCCCATCTTTACCGCCACCCTGCTGGTGCTGCTGCTGTT
GATGCTGCGACCTACCATCACCAGTACCTGCAGCAGCAGCAGCAGGTGTA
TGCCCTCTCCCCCTATCACCACTCCAGCCACCAAGCCCACCACCAACGCC
ACCCCTCCCTCCCCTCCGTCGGAAATCACTCTCACGGGCACCCACGCAGG
CAGTGTCTCCCGGATCTTCCCTCCGTCCCTCCTTCCACTGTTGTCTCTGC
ACCACACATGCCCTCCCCCCCTGTGCACACTCATTCGACAATGGGACAAG
AGCAGATAGAAGAGGTGCTACGCCATCAGTTACATTTTTATTTTTCGCCC
GAGAACCTAGCGAATGACTTTTATCTGCGTGGAAAGATGGATAGTGAGGG
ATGGGTGCCTTTTGCGGAGGTGGCTCAATTTAAGCGAGTAAAGCACTTAT
TGGGGTTGTTGGGGATGGGAGGAGGGGTGGAGCGAGGGAAAGAGGGTCGT
CACAAGGCGGCCGTAACGGACTTGTCGTTGTTGATTAAGATTGCAGCTGA
TTCGGACGAGGTGGAAGTGCGGATGGTGATGCAGGGGGATGACGGGAGGA
GAGAAGGGAAGGAAGGGAAAGATGGGAAAGGAAGCTTTATGTACAAGATT
CGGCCGAGACACGAGCCGTTGCAATGGGTTTTGCCCGCGACGGAGTGACA
GAATGACCGTTGCGGTGTGCGTGTCTCCGTGTGACGTGTGTGACTCAATG
GGGTGTGGTAAAGTTCGCGTGAGCGAGAGAGAGACAGAGAGACAGAAAGG
CAGAGAGAGAGGCTCAGGACAAGCAGAAGCAGATGATGACCGCCCATCTT
CTTCTTCGTCCTTTTTCAATAGTTTAGGTACCCACTGGTTTCTCGTGTTG
TCTTGTCTTGGCCTCATGTTTTGATCATAAATAGTAGTACTGGTAGTAGT
GATAAGAGGAGGAGGAAAAGAAGATGGACGGAGAAAGGGATAGGAGGGTG
GGAGGAAGGAGATGTCTGAGGCAATTTAGAACTCAATTGTATTTTTTCCA
GTCTATGGAATACCCTTAACGTTTTTATATTATACTGCAAAATATAACTG
GTCAAGCCAACATGCCACTTAAATGAAAGCACTAACTCCAGCACAAGATC
AACTGTGGAACGATTAGACCTGGAGGATGAGATGAGACAAGAAAGTAGAA
GAACAAGTAGAACAGGAAATTGACGATGAGGGAGAAGAAATGAGAGTAGA
AGAGGAAGCGAGAGAAGAAGAATACGAGGAAAATGTAGAAGTTGGAATTG
ACGGCAAAAAAGTAGCGCCAGTACGAGATCAAAAGCGATGGAAGAGAGAT
GAATAAAGGGAGAATGATGACGAAGGGTGAAAAGAAAGTACCGGTCTAAC
AGTGGGCTTGCTA

Coding sequence (CDS) from alignment at scaffold_22:199751..203363-

>mRNA_7930 ID=mRNA_7930|Name=jgi.p|Nanoce1779_2|600553|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_22:199751..203363- (Nannochloropsis oceanica)
ATGGTCGTCCCAGCTGACCTGCTTGATCCCGACTCCATGAATTTCAGCCC
GCGTATCCCCATCTTCCCTTCCGGCGCTGGCCTCCCCCTCGGCCTAAACG
TCAGTTCTAGCACATTTACCCCGCACCTCACCCCGCACCCCCACAGCCAC
AGCAAGGGCGGATATTTCACTTCCCCCTATGCGGTGATGCCTCTTCCCCC
CCATCTTTACCGCCACCCTGCTGGTGCTGCTGCTGTTGATGCTGCGACCT
ACCATCACCAGTACCTGCAGCAGCAGCAGCAGGTGTATGCCCTCTCCCCC
TATCACCACTCCAGCCACCAAGCCCACCACCAACGCCACCCCTCCCTCCC
CTCCGTCGGAAATCACTCTCACGGGCACCCACGCAGGCAGTGTCTCCCGG
ATCTTCCCTCCGTCCCTCCTTCCACTGTTGTCTCTGCACCACACATGCCC
TCCCCCCCTGTGCACACTCATTCGACAATGGGACAAGAGCAGATAGAAGA
GGTGCTACGCCATCAGTTACATTTTTATTTTTCGCCCGAGAACCTAGCGA
ATGACTTTTATCTGCGTGGAAAGATGGATAGTGAGGGATGGGTGCCTTTT
GCGGAGGTGGCTCAATTTAAGCGAGTAAAGCACTTATTGGGGTTGTTGGG
GATGGGAGGAGGGGTGGAGCGAGGGAAAGAGGGTCGTCACAAGGCGGCCG
TAACGGACTTGTCGTTGTTGATTAAGATTGCAGCTGATTCGGACGAGGTG
GAAGTGCGGATGGTGATGCAGGGGGATGACGGGAGGAGAGAAGGGAAGGA
AGGGAAAGATGGGAAAGGAAGCTTTATGTACAAGATTCGGCCGAGACACG
AGCCGTTGCAATGGGTTTTGCCCGCGACGGAGTGA

Synonyms

Publications