jgi.p|Nanoce1779_2|600552, mRNA_7929 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600552
Unique Name	mRNA_7929
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2587
Alignment location	scaffold_22:197175..199761 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600638
Track	FilteredModels2
ProteinId	600552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:197175..199761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600552	gene_7929	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600552	mRNA_7929-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7929	CDS_7929	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:197175..199761+
coding sequence from alignment at scaffold_22:197175..199761+

mRNA sequence

>mRNA_7929 ID=mRNA_7929|Name=jgi.p|Nanoce1779_2|600552|organism=Nannochloropsis oceanica|type=mRNA|length=2587bp
AACAACAGCACGCGCCAGGTGGGACTTGACCTTCTCTATATTGCTGTAGC
CACGAAGCGGGACTGCCGCCCTTTCTTTCCTGGCCTCCAGCTCTCGCTGC
CTCGCTGATTCCACTGCCATGGCCGCTCTGATGTTGACCCTGGTGATGTC
TTGGCAGACAACCGTCACCTACGCCCAGGCATATCACGTTGATTCTCCTG
CCATTCCAGGGCAAAGGTCCGGTTGGGGCAGCATAGGTGCCGCGGTGGCA
CAAAGAGAGCAGGGCGGGAAGGCCGCATCCGAGTTCTTGGCCAAGCTTCA
ATCCAAGGGCCTGGGCTCCAATGCAGAGAACCCTCCCCTTTCAGAGGACA
GCATCTACGGCATCCAGCTAGAAAAAGGCAGGGAAATGCGGTACGGCACA
CCAGGTAGTGCTGCCCTAGACGATGCGGCAGCCCTCAAGCTTTTTGAAGA
GGTGGGATATGCCCCGAAAGCCGGTTTCGAGAAGGCCATGGCCTTGTACG
AGGCAGCTTTGGTCTATGCTACGGGCGGCAAAGGCGTCGAGCAAGATCTG
ACCAAAGCCGTTCATCGACTGAGCGAATCCGCTCAATTGAAGTATGCCGA
AGCGAAGCACACGCTGGCTTTTTTCCTGAGCACGGGTTTTGGGGGCAAAC
CGTCAGATGACAAATCCGCTTTGACCTTCGAAGAGCCCGCGGCTGAAGGA
GGGACCATTGGCGCGAACCTTGCGATGGGATTCAGATACATGTTCGGCGC
AGGAGTTGATCTCAACTGTTCCGGGGCCTTGGATAATTACAAAGCTGTGG
CGGACATAGCTGTGGGGAAAGGGAACCATTACCCTGACCTCTTGCTCCGC
AAAGACGAACACTTGATATCCTTGATTGAATCCCGGCAGAAGAATGGCAA
GTCCGATTCGACTCTGCGCGCGCAATGGTTGAAGGAGGCGGCTGGAGGGA
AAAATGCCGAGGCCTTATTTGAAGTGGGGAAGATGTACGATACAGGTGCC
TACGGCATGGAGCAAGATGCTTTCCAAGCATTTGATTTCTTCCTCGCTGC
TGCAGAGAAGGGGCATGCCGGAGCCATGTCACAGGTAGCGTCAATTTATG
CGATGGCAGGACGGGAAGAGCGAGAGAAGCAGGCAGGGGGTCCAGAGGGA
GCGGAGGCTGCTTCGTTCATGCCTTCCTTGGCGCAGGATTTGGACACAGC
GATTGATTGGTTCGAGAAGGCCGGGGCTCTGGGCGACCCTATTGCCTTGA
ACGCTCTTGCTTACATGTATATGAATGGAAAGGGGGTCGACATGGACGTG
GGGAAGGCGGAGGAGCTCTATCAGACGGCAGCGGAGGCAGGGCACCCGGA
TGCGCTGTTGTACATGGGACAGCGCCTCCTAGAGGAGGGCGAGACTCAGG
AAGGTCTCGCGAACTTGCACATGTCGGAGGATCAGGGCAACATATATGCG
GCGTATCATTTGGGGCAAGTATATGAGGTGGGTGTGGATGAAGTCGACTT
TCCCCCTTCGTGTGAAACTGCAGCGGAGATGTACAAGAAAGCGGCGGAAG
GGGGCTATTGGATCGCGGGGTTGCGGTACGGCATTGATCTGTACAGAGTG
GGGCAGTACACCCAAGCTATCACCATCCTATCCATGCTTGCTGAGGAGGG
CTACGAGATCGCCCAGGCGAATGCTGCTTATATGTTCGAACATCGGATGG
GGTACTCATATCCTGACGCCGATGACCAGGCCCTACGTCTCTATGAACGG
GCCTCGGTGCAGTCCCCTGATCATTTCTTTGCCTTGGGAAATCTTATGTT
GAAGATGGAGCAGGAAGGCAAACCCACCACCGCGAGCGCTGGTCCGGTGA
CAGGTGTAGGGCAAGCGATGAGCTACTTGGAGACTGCGGCCGAACTGGGA
AACGTCCAGGCCCTGAGAAAGTTGGCTGAAATGTACGAGGTGGGGATGGA
AGGAGTGGTCGTCAAGAACACGCAGAGGGCGCTGAGTTTGTACAAACGTC
TTTTGACGGTAGTAGGGGGGGAGAAAGGAAGTGAGCGTATGGGGTGGTCC
TCGTTGGTGGACATTACCAACTTACAGTGGAAGGTGACGAGCTTGAGTGC
CAGGACCGGGTTGGCCAGTGTGATCGGGGGAGGAGGGGAGGAAGAGGGAA
ATGGGAAGGAGGAGAGACGGACGGGCTTCGAAGGGATGAGGGCGTCGGCA
GCTGAAGGACTCTAAGCTGTTGGTTGGAGACCAAGCACTGGGATTTAAAG
GATGATGGTGGCACCGCATGACAGTAATAGTAAGAAAGATTTTGAGAGAA
GGAAGGAGGACTAAATAGATTCGGACATTTACTAGATTTGAAAAATGGTA
TTGATAGAAAGTAACCAATACAGAGAAGGCGAAGTACACACTGTTCGTTT
GAATAAACGAAAATGAACGATTCTCACTCGTGAAAAAGAAAGTAGAAGGA
TAGTCGTATGCAGAGGCTGCGCACGGCAGCAAGGCCAAGGCAAACGACGA
AATGACACATGCGGCACCTGCCATAGGCAAAAGCAAATTATCGCCCTGTT
CTATCTAGCAAAAATTAAATAAGGAATAGCAAGCCCA

protein sequence of jgi.p|Nanoce1779_2|600552

>mRNA_7929-protein ID=mRNA_7929-protein|Name=jgi.p|Nanoce1779_2|600552|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MAALMLTLVMSWQTTVTYAQAYHVDSPAIPGQRSGWGSIGAAVAQREQGG
KAASEFLAKLQSKGLGSNAENPPLSEDSIYGIQLEKGREMRYGTPGSAAL
DDAAALKLFEEVGYAPKAGFEKAMALYEAALVYATGGKGVEQDLTKAVHR
LSESAQLKYAEAKHTLAFFLSTGFGGKPSDDKSALTFEEPAAEGGTIGAN
LAMGFRYMFGAGVDLNCSGALDNYKAVADIAVGKGNHYPDLLLRKDEHLI
SLIESRQKNGKSDSTLRAQWLKEAAGGKNAEALFEVGKMYDTGAYGMEQD
AFQAFDFFLAAAEKGHAGAMSQVASIYAMAGREEREKQAGGPEGAEAASF
MPSLAQDLDTAIDWFEKAGALGDPIALNALAYMYMNGKGVDMDVGKAEEL
YQTAAEAGHPDALLYMGQRLLEEGETQEGLANLHMSEDQGNIYAAYHLGQ
VYEVGVDEVDFPPSCETAAEMYKKAAEGGYWIAGLRYGIDLYRVGQYTQA
ITILSMLAEEGYEIAQANAAYMFEHRMGYSYPDADDQALRLYERASVQSP
DHFFALGNLMLKMEQEGKPTTASAGPVTGVGQAMSYLETAAELGNVQALR
KLAEMYEVGMEGVVVKNTQRALSLYKRLLTVVGGEKGSERMGWSSLVDIT
NLQWKVTSLSARTGLASVIGGGGEEEGNGKEERRTGFEGMRASAAEGL*

mRNA from alignment at scaffold_22:197175..199761+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7929 ID=mRNA_7929|Name=jgi.p|Nanoce1779_2|600552|organism=Nannochloropsis oceanica|type=mRNA|length=2587bp|location=Sequence derived from alignment at scaffold_22:197175..199761+ (Nannochloropsis oceanica)
AACAACAGCACGCGCCAGGTGGGACTTGACCTTCTCTATATTGCTGTAGC
CACGAAGCGGGACTGCCGCCCTTTCTTTCCTGGCCTCCAGCTCTCGCTGC
CTCGCTGATTCCACTGCCATGGCCGCTCTGATGTTGACCCTGGTGATGTC
TTGGCAGACAACCGTCACCTACGCCCAGGCATATCACGTTGATTCTCCTG
CCATTCCAGGGCAAAGGTCCGGTTGGGGCAGCATAGGTGCCGCGGTGGCA
CAAAGAGAGCAGGGCGGGAAGGCCGCATCCGAGTTCTTGGCCAAGCTTCA
ATCCAAGGGCCTGGGCTCCAATGCAGAGAACCCTCCCCTTTCAGAGGACA
GCATCTACGGCATCCAGCTAGAAAAAGGCAGGGAAATGCGGTACGGCACA
CCAGGTAGTGCTGCCCTAGACGATGCGGCAGCCCTCAAGCTTTTTGAAGA
GGTGGGATATGCCCCGAAAGCCGGTTTCGAGAAGGCCATGGCCTTGTACG
AGGCAGCTTTGGTCTATGCTACGGGCGGCAAAGGCGTCGAGCAAGATCTG
ACCAAAGCCGTTCATCGACTGAGCGAATCCGCTCAATTGAAGTATGCCGA
AGCGAAGCACACGCTGGCTTTTTTCCTGAGCACGGGTTTTGGGGGCAAAC
CGTCAGATGACAAATCCGCTTTGACCTTCGAAGAGCCCGCGGCTGAAGGA
GGGACCATTGGCGCGAACCTTGCGATGGGATTCAGATACATGTTCGGCGC
AGGAGTTGATCTCAACTGTTCCGGGGCCTTGGATAATTACAAAGCTGTGG
CGGACATAGCTGTGGGGAAAGGGAACCATTACCCTGACCTCTTGCTCCGC
AAAGACGAACACTTGATATCCTTGATTGAATCCCGGCAGAAGAATGGCAA
GTCCGATTCGACTCTGCGCGCGCAATGGTTGAAGGAGGCGGCTGGAGGGA
AAAATGCCGAGGCCTTATTTGAAGTGGGGAAGATGTACGATACAGGTGCC
TACGGCATGGAGCAAGATGCTTTCCAAGCATTTGATTTCTTCCTCGCTGC
TGCAGAGAAGGGGCATGCCGGAGCCATGTCACAGGTAGCGTCAATTTATG
CGATGGCAGGACGGGAAGAGCGAGAGAAGCAGGCAGGGGGTCCAGAGGGA
GCGGAGGCTGCTTCGTTCATGCCTTCCTTGGCGCAGGATTTGGACACAGC
GATTGATTGGTTCGAGAAGGCCGGGGCTCTGGGCGACCCTATTGCCTTGA
ACGCTCTTGCTTACATGTATATGAATGGAAAGGGGGTCGACATGGACGTG
GGGAAGGCGGAGGAGCTCTATCAGACGGCAGCGGAGGCAGGGCACCCGGA
TGCGCTGTTGTACATGGGACAGCGCCTCCTAGAGGAGGGCGAGACTCAGG
AAGGTCTCGCGAACTTGCACATGTCGGAGGATCAGGGCAACATATATGCG
GCGTATCATTTGGGGCAAGTATATGAGGTGGGTGTGGATGAAGTCGACTT
TCCCCCTTCGTGTGAAACTGCAGCGGAGATGTACAAGAAAGCGGCGGAAG
GGGGCTATTGGATCGCGGGGTTGCGGTACGGCATTGATCTGTACAGAGTG
GGGCAGTACACCCAAGCTATCACCATCCTATCCATGCTTGCTGAGGAGGG
CTACGAGATCGCCCAGGCGAATGCTGCTTATATGTTCGAACATCGGATGG
GGTACTCATATCCTGACGCCGATGACCAGGCCCTACGTCTCTATGAACGG
GCCTCGGTGCAGTCCCCTGATCATTTCTTTGCCTTGGGAAATCTTATGTT
GAAGATGGAGCAGGAAGGCAAACCCACCACCGCGAGCGCTGGTCCGGTGA
CAGGTGTAGGGCAAGCGATGAGCTACTTGGAGACTGCGGCCGAACTGGGA
AACGTCCAGGCCCTGAGAAAGTTGGCTGAAATGTACGAGGTGGGGATGGA
AGGAGTGGTCGTCAAGAACACGCAGAGGGCGCTGAGTTTGTACAAACGTC
TTTTGACGGTAGTAGGGGGGGAGAAAGGAAGTGAGCGTATGGGGTGGTCC
TCGTTGGTGGACATTACCAACTTACAGTGGAAGGTGACGAGCTTGAGTGC
CAGGACCGGGTTGGCCAGTGTGATCGGGGGAGGAGGGGAGGAAGAGGGAA
ATGGGAAGGAGGAGAGACGGACGGGCTTCGAAGGGATGAGGGCGTCGGCA
GCTGAAGGACTCTAAGCTGTTGGTTGGAGACCAAGCACTGGGATTTAAAG
GATGATGGTGGCACCGCATGACAGTAATAGTAAGAAAGATTTTGAGAGAA
GGAAGGAGGACTAAATAGATTCGGACATTTACTAGATTTGAAAAATGGTA
TTGATAGAAAGTAACCAATACAGAGAAGGCGAAGTACACACTGTTCGTTT
GAATAAACGAAAATGAACGATTCTCACTCGTGAAAAAGAAAGTAGAAGGA
TAGTCGTATGCAGAGGCTGCGCACGGCAGCAAGGCCAAGGCAAACGACGA
AATGACACATGCGGCACCTGCCATAGGCAAAAGCAAATTATCGCCCTGTT
CTATCTAGCAAAAATTAAATAAGGAATAGCAAGCCCA

Coding sequence (CDS) from alignment at scaffold_22:197175..199761+

>mRNA_7929 ID=mRNA_7929|Name=jgi.p|Nanoce1779_2|600552|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at scaffold_22:197175..199761+ (Nannochloropsis oceanica)
ATGGCCGCTCTGATGTTGACCCTGGTGATGTCTTGGCAGACAACCGTCAC
CTACGCCCAGGCATATCACGTTGATTCTCCTGCCATTCCAGGGCAAAGGT
CCGGTTGGGGCAGCATAGGTGCCGCGGTGGCACAAAGAGAGCAGGGCGGG
AAGGCCGCATCCGAGTTCTTGGCCAAGCTTCAATCCAAGGGCCTGGGCTC
CAATGCAGAGAACCCTCCCCTTTCAGAGGACAGCATCTACGGCATCCAGC
TAGAAAAAGGCAGGGAAATGCGGTACGGCACACCAGGTAGTGCTGCCCTA
GACGATGCGGCAGCCCTCAAGCTTTTTGAAGAGGTGGGATATGCCCCGAA
AGCCGGTTTCGAGAAGGCCATGGCCTTGTACGAGGCAGCTTTGGTCTATG
CTACGGGCGGCAAAGGCGTCGAGCAAGATCTGACCAAAGCCGTTCATCGA
CTGAGCGAATCCGCTCAATTGAAGTATGCCGAAGCGAAGCACACGCTGGC
TTTTTTCCTGAGCACGGGTTTTGGGGGCAAACCGTCAGATGACAAATCCG
CTTTGACCTTCGAAGAGCCCGCGGCTGAAGGAGGGACCATTGGCGCGAAC
CTTGCGATGGGATTCAGATACATGTTCGGCGCAGGAGTTGATCTCAACTG
TTCCGGGGCCTTGGATAATTACAAAGCTGTGGCGGACATAGCTGTGGGGA
AAGGGAACCATTACCCTGACCTCTTGCTCCGCAAAGACGAACACTTGATA
TCCTTGATTGAATCCCGGCAGAAGAATGGCAAGTCCGATTCGACTCTGCG
CGCGCAATGGTTGAAGGAGGCGGCTGGAGGGAAAAATGCCGAGGCCTTAT
TTGAAGTGGGGAAGATGTACGATACAGGTGCCTACGGCATGGAGCAAGAT
GCTTTCCAAGCATTTGATTTCTTCCTCGCTGCTGCAGAGAAGGGGCATGC
CGGAGCCATGTCACAGGTAGCGTCAATTTATGCGATGGCAGGACGGGAAG
AGCGAGAGAAGCAGGCAGGGGGTCCAGAGGGAGCGGAGGCTGCTTCGTTC
ATGCCTTCCTTGGCGCAGGATTTGGACACAGCGATTGATTGGTTCGAGAA
GGCCGGGGCTCTGGGCGACCCTATTGCCTTGAACGCTCTTGCTTACATGT
ATATGAATGGAAAGGGGGTCGACATGGACGTGGGGAAGGCGGAGGAGCTC
TATCAGACGGCAGCGGAGGCAGGGCACCCGGATGCGCTGTTGTACATGGG
ACAGCGCCTCCTAGAGGAGGGCGAGACTCAGGAAGGTCTCGCGAACTTGC
ACATGTCGGAGGATCAGGGCAACATATATGCGGCGTATCATTTGGGGCAA
GTATATGAGGTGGGTGTGGATGAAGTCGACTTTCCCCCTTCGTGTGAAAC
TGCAGCGGAGATGTACAAGAAAGCGGCGGAAGGGGGCTATTGGATCGCGG
GGTTGCGGTACGGCATTGATCTGTACAGAGTGGGGCAGTACACCCAAGCT
ATCACCATCCTATCCATGCTTGCTGAGGAGGGCTACGAGATCGCCCAGGC
GAATGCTGCTTATATGTTCGAACATCGGATGGGGTACTCATATCCTGACG
CCGATGACCAGGCCCTACGTCTCTATGAACGGGCCTCGGTGCAGTCCCCT
GATCATTTCTTTGCCTTGGGAAATCTTATGTTGAAGATGGAGCAGGAAGG
CAAACCCACCACCGCGAGCGCTGGTCCGGTGACAGGTGTAGGGCAAGCGA
TGAGCTACTTGGAGACTGCGGCCGAACTGGGAAACGTCCAGGCCCTGAGA
AAGTTGGCTGAAATGTACGAGGTGGGGATGGAAGGAGTGGTCGTCAAGAA
CACGCAGAGGGCGCTGAGTTTGTACAAACGTCTTTTGACGGTAGTAGGGG
GGGAGAAAGGAAGTGAGCGTATGGGGTGGTCCTCGTTGGTGGACATTACC
AACTTACAGTGGAAGGTGACGAGCTTGAGTGCCAGGACCGGGTTGGCCAG
TGTGATCGGGGGAGGAGGGGAGGAAGAGGGAAATGGGAAGGAGGAGAGAC
GGACGGGCTTCGAAGGGATGAGGGCGTCGGCAGCTGAAGGACTCTAA

Synonyms

Publications