jgi.p|Nanoce1779_2|600549, mRNA_7928 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600549
Unique Name	mRNA_7928
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2069
Alignment location	scaffold_22:193576..195971 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600635
Track	FilteredModels2
ProteinId	600549

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:193576..195971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600549	gene_7928	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600549	mRNA_7928-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7928	CDS_7928	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:193576..195971+
coding sequence from alignment at scaffold_22:193576..195971+

mRNA sequence

>mRNA_7928 ID=mRNA_7928|Name=jgi.p|Nanoce1779_2|600549|organism=Nannochloropsis oceanica|type=mRNA|length=2069bp
CTACACTGCTACAGTGAAGTTGCCTTATGCCCCAAGCTTCGTGCGTGTGC
CTTGGTAGGCCCTTTGGAGGAGGGGAAGGGGGGGCGAGGTCAGGGTTGAT
GTTAGTAGGTGGTAGGGAAAGAAGCTCTGAGAGAGAGGCTTGGCTTGGCA
CCAACCAAAGTGACAAATCAATCGGCACCAGCAACCACGATCGGGCAACT
GGAAGTCCAGTGTGACAAGAAAAGCCTCCGCGGTGTGCATAAGGGCGACA
GGATGAGGAGTTTTTGAATGCACGTAGAGCATGGCGTGCGGGAAGGAGCG
GCAACAACCGTGTGGGCGTGCTCCTCGCCGCCGCAGTGAGTGGCCGGCAG
CCCATTGTTTATAGGCAAATTGGCCACGCCCTAGTGGTGGCCAGACTAAC
AAATCACAGTCTCAGTGACGGATTAAAGACAGACATGCGTTGCCTCAAAG
CCACCACGCAAGCTTTGAACAAAATGAAAACTCCTTGGGGGCGATACGTG
CGTGAGTGGCTGGTGGGTTTTCTCGCACTCTTTCAAGTCATCGAAAACCG
AAGATACTTCAGCGCCTTTCTTTAGGAGTGATCCAGACAACCTCAGTTTT
TGCCCTGTAGCAGTACGACAATCATCCAACGATGACCTCCCCCGATGCTG
CTTCTACGGTCCCAAACGATGAGGAAGTGGGCAATGCCCTGTTGGAGGCG
GCACGGTATGGCGATTTAGAGGACCTCCAACAACTGACTAACACATATGG
CAAGCAGCGTCTGGCTTATCGGGGTGCTAATGGGAACAACACGGCATTGC
ACTATGCCTGCGCTAACGGCCACACCGATTGTGTAGCTTGGCTGATCGAG
CAAGGTGTGGAAGGCGCCCCATGCAACGAAAGCGGCAATACTCCCTTGCA
TTGGGCGGTGCAAAACCAACATGATGAGGTGGTGCGCATCTTGCTAGCCA
AGCTTGATAATGTGGACGTGCTCATACGGAATGGCTTTGGAAAGAGTGTT
TTGACTGAGGGGTTTGCGGGTAAAAACCAAGAGATATTGAAAATGTTGTT
GGAGCATTCATCAGCGGCTGAGGATGCGTTGATGGGTGTAACAGGACAGG
GATTGAAAGAGGAGGGACTGCAGGAGATGAACGAGGGGGAGGAGGGGGAG
GAGACGGAGGTGGCTGTGACTTTAGCAATTGGGGAGAACGACGAGGCCAC
CGCCGCAGTGGTTGTGCATCGCCTGGTGTTGGATAAATTAGAAGAGCCTG
AGCGCGTCCTGCAAATTCGTGAAATGGAAATCAAACATGCAGATGACCCC
TTTGGACAAGCGGCCGCAGAGGACACCACCGGCCTCGGGGTCTGGCCCGC
ATCCCTCATCCTCGCCCGCTGGCTCGTCATACAGCATAAAGAGCTGCTCG
ACGATGCTACAGTTGTCGAATTAGGGTGTGGGTGTGCGGTGCCGGGATTG
GCGGCGGCCTTGCATGGGAGGCCCAAAGTGGTTCATCTCACAGACCTGAA
CCCTGAGACACTTGCCAACGCCCAGGAAAATGTTCAATTAAACAAAGAAT
CTTTCCTCGTTCCTGATGCGGCGGCCCGCGTGCATGTCACTGCCATGGAT
TGGGGGAATAAGGCCTCATACCCTGCGGGAGCGATAGGTTCGGTTGACGT
AGTCTTGGGCTCGGACTTGGTTTATCAAAAGAGTCTTGGCCCCTTGCTCT
CCCAGGTACTGCTACGACTCCTGCGCCCTGGAGGTAAATTTTTGTACGTG
GCACCGGCAACAGGACGGGACGGTTTGCCTGAGTTCTTGGACATGCTTTC
GCATGGCGCGGGCTTGACGTTAGTGTCGGAAAAGGAGGCGGGACCTGAAC
TATTGGCGAATCCCCTGGAGGGAAGTAGAGGGACTGCAGAGATAGAAGAG
GACGACGGTGGAATAGAGATGGAGGATCACCCACAACAGGAAGCGGCGGA
GCGGGCGGACGAGTCCTTCTTTTTGCATTTCCACGAAATGGCCACTAAGG
GAGTGATGTACAAACTTTACGAGTTCGAGAAGCAGTAATACGAAAAAATA
AAATAATGACACGAACACA

protein sequence of jgi.p|Nanoce1779_2|600549

>mRNA_7928-protein ID=mRNA_7928-protein|Name=jgi.p|Nanoce1779_2|600549|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MTSPDAASTVPNDEEVGNALLEAARYGDLEDLQQLTNTYGKQRLAYRGAN
GNNTALHYACANGHTDCVAWLIEQGVEGAPCNESGNTPLHWAVQNQHDEV
VRILLAKLDNVDVLIRNGFGKSVLTEGFAGKNQEILKMLLEHSSAAEDAL
MGVTGQGLKEEGLQEMNEGEEGEETEVAVTLAIGENDEATAAVVVHRLVL
DKLEEPERVLQIREMEIKHADDPFGQAAAEDTTGLGVWPASLILARWLVI
QHKELLDDATVVELGCGCAVPGLAAALHGRPKVVHLTDLNPETLANAQEN
VQLNKESFLVPDAAARVHVTAMDWGNKASYPAGAIGSVDVVLGSDLVYQK
SLGPLLSQVLLRLLRPGGKFLYVAPATGRDGLPEFLDMLSHGAGLTLVSE
KEAGPELLANPLEGSRGTAEIEEDDGGIEMEDHPQQEAAERADESFFLHF
HEMATKGVMYKLYEFEKQ*

mRNA from alignment at scaffold_22:193576..195971+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7928 ID=mRNA_7928|Name=jgi.p|Nanoce1779_2|600549|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp|location=Sequence derived from alignment at scaffold_22:193576..195971+ (Nannochloropsis oceanica)
CTACACTGCTACAGTGAAGTTGCCTTATGCCCCAAGCTTCGTGCGTGTGC
CTTGGTAGGCCCTTTGGAGGAGGGGAAGGGGGGGCGAGGTCAGGGTTGAT
GTTAGTAGGTGGTAGGGAAAGAAGCTCTGAGAGAGAGGCTTGGCTTGGCA
CCAACCAAAGTGACAAATCAATCGGCACCAGCAACCACGATCGGGCAACT
GGAAGTCCAGTGTGACAAGAAAAGCCTCCGCGGTGTGCATAAGGGCGACA
GGATGAGGAGTTTTTGAATGCACGTAGAGCATGGCGTGCGGGAAGGAGCG
GCAACAACCGTGTGGGCGTGCTCCTCGCCGCCGCAGTGAGTGGCCGGCAG
CCCATTGTTTATAGGCAAATTGGCCACGCCCTAGTGGTGGCCAGACTAAC
AAATCACAGTCTCAGTGACGGATTAAAGACAGACATGCGTTGCCTCAAAG
CCACCACGCAAGCTTTGAACAAAATGAAAACTCCTTGGGGGCGATACGTG
CGTGAGTGGCTGGTGGGTTTTCTCGCACTCTTTCAAGTCATCGAAAACCG
AAGATACTTCAGCGCCTTTCTTTAGGAGTAAGTAAGCCTCATGCTTCGCG
GTTGTGAAGCAGTTTCTGGTGATTTCATGTGTATTATAATGGAGTTGGAT
TTCATTTGGTTGCTGACCAACTTCCCCACCTTTCTCCCCTCCCTGCACAC
CCCACAGGTGATCCAGACAACCTCAGTTTTTGCCCTGTAGCAGTACGACA
ATCATCCAACGATGACCTCCCCCGATGCTGCTTCTACGGTCCCAAACGAT
GAGGAAGTGGGCAATGCCCTGTTGGAGGCGGCACGGTATGGCGATTTAGA
GGACCTCCAACAACTGACTAACACATATGGCAAGCAGCGTCTGGCTTATC
GGGGTGCTAATGGGAACAACACGGCATTGCACTATGGTGAGTGAGAGAGT
TAGTGCGGAGCGATGGAAGGTCTTGTCTCTCCTGTCCCTATATTGACACA
CAACGCTTTTATGGGTACACATAGAACAGTTAGAATTAAATATTCGTGCT
ATTTCAGTCCCTACACGCTTCTCCCTATCCTCATCGGACGCATCGGCCTC
CCCCTCACCCCTCCCCCTCCCTCCCATATACAGCCTGCGCTAACGGCCAC
ACCGATTGTGTAGCTTGGCTGATCGAGCAAGGTGTGGAAGGCGCCCCATG
CAACGAAAGCGGCAATACTCCCTTGCATTGGGCGGTGCAAAACCAACATG
ATGAGGTGGTGCGCATCTTGCTAGCCAAGCTTGATAATGTGGACGTGCTC
ATACGGAATGGCTTTGGAAAGAGTGTTTTGACTGAGGGGTTTGCGGGTAA
AAACCAAGAGATATTGAAAATGTTGTTGGAGCATTCATCAGCGGCTGAGG
ATGCGTTGATGGGTGTAACAGGACAGGGATTGAAAGAGGAGGGACTGCAG
GAGATGAACGAGGGGGAGGAGGGGGAGGAGACGGAGGTGGCTGTGACTTT
AGCAATTGGGGAGAACGACGAGGCCACCGCCGCAGTGGTTGTGCATCGCC
TGGTGTTGGATAAATTAGAAGAGCCTGAGCGCGTCCTGCAAATTCGTGAA
ATGGAAATCAAACATGCAGATGACCCCTTTGGACAAGCGGCCGCAGAGGA
CACCACCGGCCTCGGGGTCTGGCCCGCATCCCTCATCCTCGCCCGCTGGC
TCGTCATACAGCATAAAGAGCTGCTCGACGATGCTACAGTTGTCGAATTA
GGGTGTGGGTGTGCGGTGCCGGGATTGGCGGCGGCCTTGCATGGGAGGCC
CAAAGTGGTTCATCTCACAGACCTGAACCCTGAGACACTTGCCAACGCCC
AGGAAAATGTTCAATTAAACAAAGAATCTTTCCTCGTTCCTGATGCGGCG
GCCCGCGTGCATGTCACTGCCATGGATTGGGGGAATAAGGCCTCATACCC
TGCGGGAGCGATAGGTTCGGTTGACGTAGTCTTGGGCTCGGACTTGGTTT
ATCAAAAGAGTCTTGGCCCCTTGCTCTCCCAGGTACTGCTACGACTCCTG
CGCCCTGGAGGTAAATTTTTGTACGTGGCACCGGCAACAGGACGGGACGG
TTTGCCTGAGTTCTTGGACATGCTTTCGCATGGCGCGGGCTTGACGTTAG
TGTCGGAAAAGGAGGCGGGACCTGAACTATTGGCGAATCCCCTGGAGGGA
AGTAGAGGGACTGCAGAGATAGAAGAGGACGACGGTGGAATAGAGATGGA
GGATCACCCACAACAGGAAGCGGCGGAGCGGGCGGACGAGTCCTTCTTTT
TGCATTTCCACGAAATGGCCACTAAGGGAGTGATGTACAAACTTTACGAG
TTCGAGAAGCAGTAATACGAAAAAATAAAATAATGACACGAACACA

Coding sequence (CDS) from alignment at scaffold_22:193576..195971+

>mRNA_7928 ID=mRNA_7928|Name=jgi.p|Nanoce1779_2|600549|organism=Nannochloropsis oceanica|type=CDS|length=2814bp|location=Sequence derived from alignment at scaffold_22:193576..195971+ (Nannochloropsis oceanica)
ATGACCTCCCCCGATGCTGCTTCTACGGTCCCAAACGATGAGGAAGTGGG
CAATGCCCTGTTGGAGGCGGCACGGTATGGCGATTTAGAGGACCTCCAAC
AACTGACTAACACATATGGCAAGCAGCGTCTGGCTTATCGGGGTGCTAAT
GGGAACAACACGGCATTGCACTATGCCTGCGCTAACGGCCACACCGATTG
TGTAGCTTGGCTGATCGAGCAAGGTGTGGAAGGCGCCCCATGCAACGAAA
GCGGCAATACTCCCTTGCATTGGGCGGTGCAAAACCAACATGATGAGGTG
GTGCGCATCTTGCTAGCCAAGCTTGATAATGTGGACGTGCTCATACGGAA
TGGCTTTGGAAAGAGTGTTTTGACTGAGGGGTTTGCGGGTAAAAACCAAG
AGATATTGAAAATGTTGTTGGAGCATTCATCAGCGGCTGAGGATGCGTTG
ATGGGTGTAACAGGACAGGGATTGAAAGAGGAGGGACTGCAGGAGATGAA
CGAGGGGGAGGAGGGGGAGGAGACGGAGGTGGCTGTGACTTTAGCAATTG
GGGAGAACGACGAGGCCACCGCCGCAGTGGTTGTGCATCGCCTGGTGTTG
GATAAATTAGAAGAGCCTGAGCGCGTCCTGCAAATTCGTGAAATGGAAAT
CAAACATGCAGATGACCCCTTTGGACAAGCGGCCGCAGAGGACACCACCG
GCCTCGGGGTCTGGCCCGCATCCCTCATCCTCGCCCGCTGGCTCGTCATA
CAGCATAAAGAGCTGCTCGACGATGCTACAGTTGTCGAATTAGGGTGTGG
GTGTGCGGTGCCGGGATTGGCGGCGGCCTTGCATGGGAGGCCCAAAGTGG
TTCATCTCACAGACCTGAACCCTGAGACACTTGCCAACGCCCAGGAAAAT
GTTCAATTAAACAAAGAATCTTTCCTCGTTCCTGATGCGGCGGCCCGCGT
GCATGTCACTGCCATGGATTGGGGGAATAAGGCCTCATACCCTGCGGGAG
CGATAGGTTCGGTTGACGTAGTCTTGGGCTCGGACTTGGTTTATCAAAAG
AGTCTTGGCCCCTTGCTCTCCCAGGTACTGCTACGACTCCTGCGCCCTGG
AGGTAAATTTTTGTACGTGGCACCGGCAACAGGACGGGACGGTTTGCCTG
AGTTCTTGGACATGCTTTCGCATGGCGCGGGCTTGACGTTAGTGTCGGAA
AAGGAGGCGGGACCTGAACTATTGGCGAATCCCCTGGAGGGAAGTAGAGG
GACTGCAGAGATAGAAGAGGACGACGGTGGAATAGAGATGGAGGATCACC
CACAACAGGAAGCGGCGGAGCGGGCGGACGAGTCCTTCTTTTTGCATTTC
CACGAAATGGCCACTAAGGGAGTGATGTACAAACTTTACGAGTTCGAGAA
GCAGTAAATGACCTCCCCCGATGCTGCTTCTACGGTCCCAAACGATGAGG
AAGTGGGCAATGCCCTGTTGGAGGCGGCACGGTATGGCGATTTAGAGGAC
CTCCAACAACTGACTAACACATATGGCAAGCAGCGTCTGGCTTATCGGGG
TGCTAATGGGAACAACACGGCATTGCACTATGCCTGCGCTAACGGCCACA
CCGATTGTGTAGCTTGGCTGATCGAGCAAGGTGTGGAAGGCGCCCCATGC
AACGAAAGCGGCAATACTCCCTTGCATTGGGCGGTGCAAAACCAACATGA
TGAGGTGGTGCGCATCTTGCTAGCCAAGCTTGATAATGTGGACGTGCTCA
TACGGAATGGCTTTGGAAAGAGTGTTTTGACTGAGGGGTTTGCGGGTAAA
AACCAAGAGATATTGAAAATGTTGTTGGAGCATTCATCAGCGGCTGAGGA
TGCGTTGATGGGTGTAACAGGACAGGGATTGAAAGAGGAGGGACTGCAGG
AGATGAACGAGGGGGAGGAGGGGGAGGAGACGGAGGTGGCTGTGACTTTA
GCAATTGGGGAGAACGACGAGGCCACCGCCGCAGTGGTTGTGCATCGCCT
GGTGTTGGATAAATTAGAAGAGCCTGAGCGCGTCCTGCAAATTCGTGAAA
TGGAAATCAAACATGCAGATGACCCCTTTGGACAAGCGGCCGCAGAGGAC
ACCACCGGCCTCGGGGTCTGGCCCGCATCCCTCATCCTCGCCCGCTGGCT
CGTCATACAGCATAAAGAGCTGCTCGACGATGCTACAGTTGTCGAATTAG
GGTGTGGGTGTGCGGTGCCGGGATTGGCGGCGGCCTTGCATGGGAGGCCC
AAAGTGGTTCATCTCACAGACCTGAACCCTGAGACACTTGCCAACGCCCA
GGAAAATGTTCAATTAAACAAAGAATCTTTCCTCGTTCCTGATGCGGCGG
CCCGCGTGCATGTCACTGCCATGGATTGGGGGAATAAGGCCTCATACCCT
GCGGGAGCGATAGGTTCGGTTGACGTAGTCTTGGGCTCGGACTTGGTTTA
TCAAAAGAGTCTTGGCCCCTTGCTCTCCCAGGTACTGCTACGACTCCTGC
GCCCTGGAGGTAAATTTTTGTACGTGGCACCGGCAACAGGACGGGACGGT
TTGCCTGAGTTCTTGGACATGCTTTCGCATGGCGCGGGCTTGACGTTAGT
GTCGGAAAAGGAGGCGGGACCTGAACTATTGGCGAATCCCCTGGAGGGAA
GTAGAGGGACTGCAGAGATAGAAGAGGACGACGGTGGAATAGAGATGGAG
GATCACCCACAACAGGAAGCGGCGGAGCGGGCGGACGAGTCCTTCTTTTT
GCATTTCCACGAAATGGCCACTAAGGGAGTGATGTACAAACTTTACGAGT
TCGAGAAGCAGTAA

Synonyms

Publications