jgi.p|Nanoce1779_2|600547, mRNA_7926 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600547
Unique NamemRNA_7926
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length910
Alignment locationscaffold_22:190761..191670 +

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Properties
Property NameValue
TranscriptId600633
TrackFilteredModels2
ProteinId600547
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:190761..191670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600547gene_7926Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600547mRNA_7926-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7926CDS_7926Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7926 ID=mRNA_7926|Name=jgi.p|Nanoce1779_2|600547|organism=Nannochloropsis oceanica|type=mRNA|length=910bp
TTTGACCATGGTTGATGTCTTCGTTCTCTTTTCTTAAACTGCGTTTTGGC
CTTTTCCCTCTCTGGACCAGGCAGCCATCCCTCTGGGTGAGGTTGCGCTC
TCACGATTTCGTTTTTGCCCCCTTTACACCTCTAGGCCTCCCCTCCTTCG
GCTCCGCAGGCTACTGCGAAGAAACCATTGTCGTATGTTCCTCGTTCCCT
TCTACCGTCATGCGTGCGCCTTCTCTTTTTCATTTTATTTTTCCCTTTCC
CCCCTGCATGTGAGGCCGCAACCTCCGTCGCCGCGCCGTAGCAGTTCATC
AATTTTTGCTTTCGTTCGATAACAAAGTGTGCGTGGGTGTGTTGTAGATT
ATTCATAATATTTGTTTGGGCGACGAAATGGCCTTCTCTCTGACAAATCA
ACCCAGACTGCCCTCCCCCTCCCACCGCCTGTGTTGGAAAATACTCAACC
GTTCCCACAAGCTCTCTTCTGTGATGTTGTTTTATGTTGTTGTATTCGTG
GTCGTTGATGTTGTGATTGTAGAAGTAATTGTGGTTTGTGATGTTGACGT
TGTGAACGTAGTTGTGGTATTAGGTGTGGTTGCTGTTTGTCGTTGCTGCT
GCTGCTACTGCTGCTATTCCATTTTGATGTCGCCATAGCTCTTGTATTTT
TCGCAACTCTCTTCCTGTGTGTCTGACTCATGTCTACCCTTACCGACACA
TCGAGTCCTCTCCCCGATGTCTTAACCCGAGGAAAGGCGCGTGTCTCGTT
CTGTTCTCTATACTCCACTTCTCGTCTTTTCCTTCTTTTATCTTCATGCG
TATCTCATCCACTCCCTCCCTCCTTCCTTCCTTCCTTCAAATTCAAGGCA
GAGCAACCAACGTCTCATTATGCGAGCTCATGCTCGGTACTGCTTTCGCC
AGCAGGCCTC
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protein sequence of jgi.p|Nanoce1779_2|600547

>mRNA_7926-protein ID=mRNA_7926-protein|Name=jgi.p|Nanoce1779_2|600547|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MAFSLTNQPRLPSPSHRLCWKILNRSHKLSSVMLFYVVVFVVVDVVIVEV
IVVCDVDVVNVVVVLGVVAVCRCCCCYCCYSILMSP*
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mRNA from alignment at scaffold_22:190761..191670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7926 ID=mRNA_7926|Name=jgi.p|Nanoce1779_2|600547|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_22:190761..191670+ (Nannochloropsis oceanica)
TTTGACCATGGTTGATGTCTTCGTTCTCTTTTCTTAAACTGCGTTTTGGC
CTTTTCCCTCTCTGGACCAGGCAGCCATCCCTCTGGGTGAGGTTGCGCTC
TCACGATTTCGTTTTTGCCCCCTTTACACCTCTAGGCCTCCCCTCCTTCG
GCTCCGCAGGCTACTGCGAAGAAACCATTGTCGTATGTTCCTCGTTCCCT
TCTACCGTCATGCGTGCGCCTTCTCTTTTTCATTTTATTTTTCCCTTTCC
CCCCTGCATGTGAGGCCGCAACCTCCGTCGCCGCGCCGTAGCAGTTCATC
AATTTTTGCTTTCGTTCGATAACAAAGTGTGCGTGGGTGTGTTGTAGATT
ATTCATAATATTTGTTTGGGCGACGAAATGGCCTTCTCTCTGACAAATCA
ACCCAGACTGCCCTCCCCCTCCCACCGCCTGTGTTGGAAAATACTCAACC
GTTCCCACAAGCTCTCTTCTGTGATGTTGTTTTATGTTGTTGTATTCGTG
GTCGTTGATGTTGTGATTGTAGAAGTAATTGTGGTTTGTGATGTTGACGT
TGTGAACGTAGTTGTGGTATTAGGTGTGGTTGCTGTTTGTCGTTGCTGCT
GCTGCTACTGCTGCTATTCCATTTTGATGTCGCCATAGCTCTTGTATTTT
TCGCAACTCTCTTCCTGTGTGTCTGACTCATGTCTACCCTTACCGACACA
TCGAGTCCTCTCCCCGATGTCTTAACCCGAGGAAAGGCGCGTGTCTCGTT
CTGTTCTCTATACTCCACTTCTCGTCTTTTCCTTCTTTTATCTTCATGCG
TATCTCATCCACTCCCTCCCTCCTTCCTTCCTTCCTTCAAATTCAAGGCA
GAGCAACCAACGTCTCATTATGCGAGCTCATGCTCGGTACTGCTTTCGCC
AGCAGGCCTC
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Coding sequence (CDS) from alignment at scaffold_22:190761..191670+

>mRNA_7926 ID=mRNA_7926|Name=jgi.p|Nanoce1779_2|600547|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_22:190761..191670+ (Nannochloropsis oceanica)
ATGGCCTTCTCTCTGACAAATCAACCCAGACTGCCCTCCCCCTCCCACCG
CCTGTGTTGGAAAATACTCAACCGTTCCCACAAGCTCTCTTCTGTGATGT
TGTTTTATGTTGTTGTATTCGTGGTCGTTGATGTTGTGATTGTAGAAGTA
ATTGTGGTTTGTGATGTTGACGTTGTGAACGTAGTTGTGGTATTAGGTGT
GGTTGCTGTTTGTCGTTGCTGCTGCTGCTACTGCTGCTATTCCATTTTGA
TGTCGCCATAG
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Synonyms
Publications