jgi.p|Nanoce1779_2|568222, mRNA_7924 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568222
Unique NamemRNA_7924
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2961
Alignment locationscaffold_22:181444..184404 -

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Properties
Property NameValue
TranscriptId568308
TrackFilteredModels2
ProteinId568222
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:181444..184404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568222gene_7924Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7924CDS_7924Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568222mRNA_7924-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7924 ID=mRNA_7924|Name=jgi.p|Nanoce1779_2|568222|organism=Nannochloropsis oceanica|type=mRNA|length=2961bp
ATGGGCAGCTCACGGCCCATTCATCCCACCGGGAGCCTCCGCAGCCACCA
ACGAGACGAGTTTGGTCGCACGGAGCGGGCGCGAAGCCGGAGCTCTAGTC
ACCTGCGGCATACCCGTGGTGGGAGTACCGACTTTGTGGAGCCTGTTCCA
ATCCCCCCTTCCTCCCTCCTCCGTGACTGGCTTCAGGCAGCGTGGGCTTC
CCGCCAATGCCGATGGGGCATTGGTCTCTTCTTTACGGGCTTAGTCCTGG
TAGCGATTGCGGCCGTGACGGATATCGAGGGGAATGCTTTTCGGAACGCC
GAGATCCGTAAGGTGGTCGTGGTAGACTCTCCCAACCATCCCGAGTTCAA
GGCCTGGGCGACGGGCGAGCAGCAGAGGACGCCGCTGTTCTACACCTACC
ACCTGTATAACATAACCAACCCTACCCTGTTCCTGGCGGGACAGCCACCC
GCGGTGCAGGAGGTAGGGCCCTTCACCTTTCAGCAGAGAACGAAGAAGGT
AAATGTCACCTTTTCGGACGAAGGTCGGTTGGTCACGTACATAACACAGA
CGCAACATGACTTTGTGGGGGACCCCGTCACGCTGGACACGCAGTCGGTC
TACTTCTTTAACCTCCCCTATTCCGTCGCTGTCTACACGGCCGGTAGCGA
GACGAATCTCCTCAAGATTGGCTCACAACAGGCCTTGGCCGAGATTTTAT
ATCAGATGCAGACCTACTTCTTGCCTACCCTCAAGGAGAATGCTGTGGTG
ATGGCCATTCAGATGGCAGTGGACGCGATGACCCAAATCCTCGATGCGAT
GCAAGCCCCCGCCGACGCCACTCCCACCCGATGGGGCGGTGGATGCACTA
GCAACATGTTTGGAAAGATCTGTGGGTTTGACGCCGCTGCTAATTTCTTC
AAGGTTGTGGATCGAAAGAACAAGATGGATTTAAACCTGCTGCAGCTGTG
CATCAACACCAAACTGACCGAAGCGGAGCGCATTCCTTTGGCAACAGTGC
GGCGGCTATGGAACCCGGACGATGAGTACGCAATTTTCAACATTGGTCGG
GCCAGTGCTTCGGAGCGGTATGGCATCTCGTATTGGCTTTGGGGGGACGC
CGACGTCCAGGATGCCATTACGAGGCATTTTGGCTTAACCAATCGGCAGT
ACAACGCGTTGCGGGTGTATTTGTTGGAGATATACCGGAACCCGATGCTG
GAAATTGCAACGGTCAAAATCTTCAAGGAAAGCCTCCAGCCTGAAGATGC
GGGTACGGCGGAAGTGAACCAATGGAGCGATTTTATGTGGCGGCAGTGGG
CTGTGGGGGACGTGATTACCCGCCTCAAGAACGAGTCAATGGCCAAGCCA
GAAAGCATGCAGCCGGAGCTCCCGCCTGAGTTCGCGTGGTATGCGGAAAA
GGCGGGGATGCAGACGTTCATGTACGGAGGCAAGCGCTGGAACAAAACGC
AGGCGAAGTGCACCTTTGACCTGGTGAAGCGGCCCATGATCTACTTTCAA
ACGCATGTGTTGGGTCTGCCGGGGCCAAGCATTAGCCGCCCAACCTTCGT
CGACTTCGGTTTAGAGGATGCCGGCGAGATCCTGGCTGATCCTCGGGATT
GTTTTCAGTCCAAGACCGACTGGGGCCTGCTGCAAGGCTATCTAGCCGGT
TTGGCGGAGGATTTTGTTGCTCCCTTGCTCGAAGAGGACGTAATCAGCAA
CAACGGTGGACTGATTACGAAGCGGACGTTGCGAGAGTCCCTGTATGGGT
ACGCCGCTCCCATTTTGCAGCTGAGTCTGGCAAAGGACGATCCTCGAGCT
ATGAAGTTTAATATGTTGGCCAACGACCCAAGCTTGGATGGCCCTGCGCG
TTGCCTTTCCTCGAGTGACGTGGAAAACCCCTTCACGGCTTGTCGATTCG
CTTCGCTCAACACTACCACAAACGCGGATGGGAGCGTGCGCTCTGCTCGG
GTCTTTGCCAAAGTGCCCAACACATACCATACCGGCAAGGACGACGACAA
GCGCGCAGGGGCTTTCTTTACATACCACGGTGATCGCAATATTGCCGACA
TCTGGCCGGGTGGCACCATCCCCTTTGCGGGAGGAGCCCAGGACCTACCT
GGTTCGGTGCAGTTCGGCTATTCAGATGGAATGCAGTTCCCGCCCTTTGG
TGCCATTGATAAGCCCGGCGCGGTCCTGTCTGTCTTTGTGCCGGGCTTCG
TCCTGCCGCTACGTTTTGCCTTTTCAGAGGATGTGGTTGTAGAGGGCATT
AAACTCAAGCGTTTCCGTGTGGTGCCAGAGACATTTAGCAGCTCTCGTAG
CGACGCTAAGACCTTCGATATGGACCAGGTGAAGCAGGATGGCCTCTTTA
ATCTCACAGGCATTATGACGGGCGTGACCTATTTTAGCAAGCCGCATTTT
CGCCCAAGCAAACCTTTTGACATGGCTGATATTGATGGTCTCGCTGCCTT
TGATCCTGTCCGCGACGACAGTTATATTGACGTAGAGCCTATAACTGGCA
AGACCATGAACGCCGACATCAAACTGCAGCTCAACGCCGGGACCACCCCG
GGAGTTTTTGACCAATTTCACAAGACTGTTTATCCTGTTAAGGCCTTACC
AGTTCTCCACGTTGCTCAGCACGCCAGCGTCGTTCCTTTTGACGCCAAGT
TCTTCAAACGCATGGTGTATGGCACCGAGAAGCTGATCAAACTCACCACC
ATCGTGTCTGCCTGTCTGGGCGCGTTGTTCTTGGTGGTTGGCCTAGCGCT
GATTATGCTGCATGCCATCCGGCACGGCGCCGCAGTAGCAGCAGCAGAAG
CAGGAGTGGAGGGAATGATCAAAGCATATCCTTCTGGTGATGACGTGCTG
GTTGGAGAGGGAGATGTGGAGATGGCCACCACCGCAAGTATGCGCAAGAG
CTCGTCGGTTGCTGGGGTAGCACCACCGCCCAAGCCACCGTCGCGGCGGG
GTAGGCTTTGA
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protein sequence of jgi.p|Nanoce1779_2|568222

>mRNA_7924-protein ID=mRNA_7924-protein|Name=jgi.p|Nanoce1779_2|568222|organism=Nannochloropsis oceanica|type=polypeptide|length=987bp
MGSSRPIHPTGSLRSHQRDEFGRTERARSRSSSHLRHTRGGSTDFVEPVP
IPPSSLLRDWLQAAWASRQCRWGIGLFFTGLVLVAIAAVTDIEGNAFRNA
EIRKVVVVDSPNHPEFKAWATGEQQRTPLFYTYHLYNITNPTLFLAGQPP
AVQEVGPFTFQQRTKKVNVTFSDEGRLVTYITQTQHDFVGDPVTLDTQSV
YFFNLPYSVAVYTAGSETNLLKIGSQQALAEILYQMQTYFLPTLKENAVV
MAIQMAVDAMTQILDAMQAPADATPTRWGGGCTSNMFGKICGFDAAANFF
KVVDRKNKMDLNLLQLCINTKLTEAERIPLATVRRLWNPDDEYAIFNIGR
ASASERYGISYWLWGDADVQDAITRHFGLTNRQYNALRVYLLEIYRNPML
EIATVKIFKESLQPEDAGTAEVNQWSDFMWRQWAVGDVITRLKNESMAKP
ESMQPELPPEFAWYAEKAGMQTFMYGGKRWNKTQAKCTFDLVKRPMIYFQ
THVLGLPGPSISRPTFVDFGLEDAGEILADPRDCFQSKTDWGLLQGYLAG
LAEDFVAPLLEEDVISNNGGLITKRTLRESLYGYAAPILQLSLAKDDPRA
MKFNMLANDPSLDGPARCLSSSDVENPFTACRFASLNTTTNADGSVRSAR
VFAKVPNTYHTGKDDDKRAGAFFTYHGDRNIADIWPGGTIPFAGGAQDLP
GSVQFGYSDGMQFPPFGAIDKPGAVLSVFVPGFVLPLRFAFSEDVVVEGI
KLKRFRVVPETFSSSRSDAKTFDMDQVKQDGLFNLTGIMTGVTYFSKPHF
RPSKPFDMADIDGLAAFDPVRDDSYIDVEPITGKTMNADIKLQLNAGTTP
GVFDQFHKTVYPVKALPVLHVAQHASVVPFDAKFFKRMVYGTEKLIKLTT
IVSACLGALFLVVGLALIMLHAIRHGAAVAAAEAGVEGMIKAYPSGDDVL
VGEGDVEMATTASMRKSSSVAGVAPPPKPPSRRGRL*
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mRNA from alignment at scaffold_22:181444..184404-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7924 ID=mRNA_7924|Name=jgi.p|Nanoce1779_2|568222|organism=Nannochloropsis oceanica|type=mRNA|length=2961bp|location=Sequence derived from alignment at scaffold_22:181444..184404- (Nannochloropsis oceanica)
ATGGGCAGCTCACGGCCCATTCATCCCACCGGGAGCCTCCGCAGCCACCA ACGAGACGAGTTTGGTCGCACGGAGCGGGCGCGAAGCCGGAGCTCTAGTC ACCTGCGGCATACCCGTGGTGGGAGTACCGACTTTGTGGAGCCTGTTCCA ATCCCCCCTTCCTCCCTCCTCCGTGACTGGCTTCAGGCAGCGTGGGCTTC CCGCCAATGCCGATGGGGCATTGGTCTCTTCTTTACGGGCTTAGTCCTGG TAGCGATTGCGGCCGTGACGGATATCGAGGGGAATGCTTTTCGGAACGCC GAGATCCGTAAGGTGGTCGTGGTAGACTCTCCCAACCATCCCGAGTTCAA GGCCTGGGCGACGGGCGAGCAGCAGAGGACGCCGCTGTTCTACACCTACC ACCTGTATAACATAACCAACCCTACCCTGTTCCTGGCGGGACAGCCACCC GCGGTGCAGGAGGTAGGGCCCTTCACCTTTCAGCAGAGAACGAAGAAGGT AAATGTCACCTTTTCGGACGAAGGTCGGTTGGTCACGTACATAACACAGA CGCAACATGACTTTGTGGGGGACCCCGTCACGCTGGACACGCAGTCGGTC TACTTCTTTAACCTCCCCTATTCCGTCGCTGTCTACACGGCCGGTAGCGA GACGAATCTCCTCAAGATTGGCTCACAACAGGCCTTGGCCGAGATTTTAT ATCAGATGCAGACCTACTTCTTGCCTACCCTCAAGGAGAATGCTGTGGTG ATGGCCATTCAGATGGCAGTGGACGCGATGACCCAAATCCTCGATGCGAT GCAAGCCCCCGCCGACGCCACTCCCACCCGATGGGGCGGTGGATGCACTA GCAACATGTTTGGAAAGATCTGTGGGTTTGACGCCGCTGCTAATTTCTTC AAGGTTGTGGATCGAAAGAACAAGATGGATTTAAACCTGCTGCAGCTGTG CATCAACACCAAACTGACCGAAGCGGAGCGCATTCCTTTGGCAACAGTGC GGCGGCTATGGAACCCGGACGATGAGTACGCAATTTTCAACATTGGTCGG GCCAGTGCTTCGGAGCGGTATGGCATCTCGTATTGGCTTTGGGGGGACGC CGACGTCCAGGATGCCATTACGAGGCATTTTGGCTTAACCAATCGGCAGT ACAACGCGTTGCGGGTGTATTTGTTGGAGATATACCGGAACCCGATGCTG GAAATTGCAACGGTCAAAATCTTCAAGGAAAGCCTCCAGCCTGAAGATGC GGGTACGGCGGAAGTGAACCAATGGAGCGATTTTATGTGGCGGCAGTGGG CTGTGGGGGACGTGATTACCCGCCTCAAGAACGAGTCAATGGCCAAGCCA GAAAGCATGCAGCCGGAGCTCCCGCCTGAGTTCGCGTGGTATGCGGAAAA GGCGGGGATGCAGACGTTCATGTACGGAGGCAAGCGCTGGAACAAAACGC AGGCGAAGTGCACCTTTGACCTGGTGAAGCGGCCCATGATCTACTTTCAA ACGCATGTGTTGGGTCTGCCGGGGCCAAGCATTAGCCGCCCAACCTTCGT CGACTTCGGTTTAGAGGATGCCGGCGAGATCCTGGCTGATCCTCGGGATT GTTTTCAGTCCAAGACCGACTGGGGCCTGCTGCAAGGCTATCTAGCCGGT TTGGCGGAGGATTTTGTTGCTCCCTTGCTCGAAGAGGACGTAATCAGCAA CAACGGTGGACTGATTACGAAGCGGACGTTGCGAGAGTCCCTGTATGGGT ACGCCGCTCCCATTTTGCAGCTGAGTCTGGCAAAGGACGATCCTCGAGCT ATGAAGTTTAATATGTTGGCCAACGACCCAAGCTTGGATGGCCCTGCGCG TTGCCTTTCCTCGAGTGACGTGGAAAACCCCTTCACGGCTTGTCGATTCG CTTCGCTCAACACTACCACAAACGCGGATGGGAGCGTGCGCTCTGCTCGG GTCTTTGCCAAAGTGCCCAACACATACCATACCGGCAAGGACGACGACAA GCGCGCAGGGGCTTTCTTTACATACCACGGTGATCGCAATATTGCCGACA TCTGGCCGGGTGGCACCATCCCCTTTGCGGGAGGAGCCCAGGACCTACCT GGTTCGGTGCAGTTCGGCTATTCAGATGGAATGCAGTTCCCGCCCTTTGG TGCCATTGATAAGCCCGGCGCGGTCCTGTCTGTCTTTGTGCCGGGCTTCG TCCTGCCGCTACGTTTTGCCTTTTCAGAGGATGTGGTTGTAGAGGGCATT AAACTCAAGCGTTTCCGTGTGGTGCCAGAGACATTTAGCAGCTCTCGTAG CGACGCTAAGACCTTCGATATGGACCAGGTGAAGCAGGATGGCCTCTTTA ATCTCACAGGCATTATGACGGGCGTGACCTATTTTAGCAAGCCGCATTTT CGCCCAAGCAAACCTTTTGACATGGCTGATATTGATGGTCTCGCTGCCTT TGATCCTGTCCGCGACGACAGTTATATTGACGTAGAGCCTATAACTGGCA AGACCATGAACGCCGACATCAAACTGCAGCTCAACGCCGGGACCACCCCG GGAGTTTTTGACCAATTTCACAAGACTGTTTATCCTGTTAAGGCCTTACC AGTTCTCCACGTTGCTCAGCACGCCAGCGTCGTTCCTTTTGACGCCAAGT TCTTCAAACGCATGGTGTATGGCACCGAGAAGCTGATCAAACTCACCACC ATCGTGTCTGCCTGTCTGGGCGCGTTGTTCTTGGTGGTTGGCCTAGCGCT GATTATGCTGCATGCCATCCGGCACGGCGCCGCAGTAGCAGCAGCAGAAG CAGGAGTGGAGGGAATGATCAAAGCATATCCTTCTGGTGATGACGTGCTG GTTGGAGAGGGAGATGTGGAGATGGCCACCACCGCAAGTATGCGCAAGAG CTCGTCGGTTGCTGGGGTAGCACCACCGCCCAAGCCACCGTCGCGGCGGG GTAGGCTTTGA
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Coding sequence (CDS) from alignment at scaffold_22:181444..184404-

>mRNA_7924 ID=mRNA_7924|Name=jgi.p|Nanoce1779_2|568222|organism=Nannochloropsis oceanica|type=CDS|length=2961bp|location=Sequence derived from alignment at scaffold_22:181444..184404- (Nannochloropsis oceanica)
ATGGGCAGCTCACGGCCCATTCATCCCACCGGGAGCCTCCGCAGCCACCA
ACGAGACGAGTTTGGTCGCACGGAGCGGGCGCGAAGCCGGAGCTCTAGTC
ACCTGCGGCATACCCGTGGTGGGAGTACCGACTTTGTGGAGCCTGTTCCA
ATCCCCCCTTCCTCCCTCCTCCGTGACTGGCTTCAGGCAGCGTGGGCTTC
CCGCCAATGCCGATGGGGCATTGGTCTCTTCTTTACGGGCTTAGTCCTGG
TAGCGATTGCGGCCGTGACGGATATCGAGGGGAATGCTTTTCGGAACGCC
GAGATCCGTAAGGTGGTCGTGGTAGACTCTCCCAACCATCCCGAGTTCAA
GGCCTGGGCGACGGGCGAGCAGCAGAGGACGCCGCTGTTCTACACCTACC
ACCTGTATAACATAACCAACCCTACCCTGTTCCTGGCGGGACAGCCACCC
GCGGTGCAGGAGGTAGGGCCCTTCACCTTTCAGCAGAGAACGAAGAAGGT
AAATGTCACCTTTTCGGACGAAGGTCGGTTGGTCACGTACATAACACAGA
CGCAACATGACTTTGTGGGGGACCCCGTCACGCTGGACACGCAGTCGGTC
TACTTCTTTAACCTCCCCTATTCCGTCGCTGTCTACACGGCCGGTAGCGA
GACGAATCTCCTCAAGATTGGCTCACAACAGGCCTTGGCCGAGATTTTAT
ATCAGATGCAGACCTACTTCTTGCCTACCCTCAAGGAGAATGCTGTGGTG
ATGGCCATTCAGATGGCAGTGGACGCGATGACCCAAATCCTCGATGCGAT
GCAAGCCCCCGCCGACGCCACTCCCACCCGATGGGGCGGTGGATGCACTA
GCAACATGTTTGGAAAGATCTGTGGGTTTGACGCCGCTGCTAATTTCTTC
AAGGTTGTGGATCGAAAGAACAAGATGGATTTAAACCTGCTGCAGCTGTG
CATCAACACCAAACTGACCGAAGCGGAGCGCATTCCTTTGGCAACAGTGC
GGCGGCTATGGAACCCGGACGATGAGTACGCAATTTTCAACATTGGTCGG
GCCAGTGCTTCGGAGCGGTATGGCATCTCGTATTGGCTTTGGGGGGACGC
CGACGTCCAGGATGCCATTACGAGGCATTTTGGCTTAACCAATCGGCAGT
ACAACGCGTTGCGGGTGTATTTGTTGGAGATATACCGGAACCCGATGCTG
GAAATTGCAACGGTCAAAATCTTCAAGGAAAGCCTCCAGCCTGAAGATGC
GGGTACGGCGGAAGTGAACCAATGGAGCGATTTTATGTGGCGGCAGTGGG
CTGTGGGGGACGTGATTACCCGCCTCAAGAACGAGTCAATGGCCAAGCCA
GAAAGCATGCAGCCGGAGCTCCCGCCTGAGTTCGCGTGGTATGCGGAAAA
GGCGGGGATGCAGACGTTCATGTACGGAGGCAAGCGCTGGAACAAAACGC
AGGCGAAGTGCACCTTTGACCTGGTGAAGCGGCCCATGATCTACTTTCAA
ACGCATGTGTTGGGTCTGCCGGGGCCAAGCATTAGCCGCCCAACCTTCGT
CGACTTCGGTTTAGAGGATGCCGGCGAGATCCTGGCTGATCCTCGGGATT
GTTTTCAGTCCAAGACCGACTGGGGCCTGCTGCAAGGCTATCTAGCCGGT
TTGGCGGAGGATTTTGTTGCTCCCTTGCTCGAAGAGGACGTAATCAGCAA
CAACGGTGGACTGATTACGAAGCGGACGTTGCGAGAGTCCCTGTATGGGT
ACGCCGCTCCCATTTTGCAGCTGAGTCTGGCAAAGGACGATCCTCGAGCT
ATGAAGTTTAATATGTTGGCCAACGACCCAAGCTTGGATGGCCCTGCGCG
TTGCCTTTCCTCGAGTGACGTGGAAAACCCCTTCACGGCTTGTCGATTCG
CTTCGCTCAACACTACCACAAACGCGGATGGGAGCGTGCGCTCTGCTCGG
GTCTTTGCCAAAGTGCCCAACACATACCATACCGGCAAGGACGACGACAA
GCGCGCAGGGGCTTTCTTTACATACCACGGTGATCGCAATATTGCCGACA
TCTGGCCGGGTGGCACCATCCCCTTTGCGGGAGGAGCCCAGGACCTACCT
GGTTCGGTGCAGTTCGGCTATTCAGATGGAATGCAGTTCCCGCCCTTTGG
TGCCATTGATAAGCCCGGCGCGGTCCTGTCTGTCTTTGTGCCGGGCTTCG
TCCTGCCGCTACGTTTTGCCTTTTCAGAGGATGTGGTTGTAGAGGGCATT
AAACTCAAGCGTTTCCGTGTGGTGCCAGAGACATTTAGCAGCTCTCGTAG
CGACGCTAAGACCTTCGATATGGACCAGGTGAAGCAGGATGGCCTCTTTA
ATCTCACAGGCATTATGACGGGCGTGACCTATTTTAGCAAGCCGCATTTT
CGCCCAAGCAAACCTTTTGACATGGCTGATATTGATGGTCTCGCTGCCTT
TGATCCTGTCCGCGACGACAGTTATATTGACGTAGAGCCTATAACTGGCA
AGACCATGAACGCCGACATCAAACTGCAGCTCAACGCCGGGACCACCCCG
GGAGTTTTTGACCAATTTCACAAGACTGTTTATCCTGTTAAGGCCTTACC
AGTTCTCCACGTTGCTCAGCACGCCAGCGTCGTTCCTTTTGACGCCAAGT
TCTTCAAACGCATGGTGTATGGCACCGAGAAGCTGATCAAACTCACCACC
ATCGTGTCTGCCTGTCTGGGCGCGTTGTTCTTGGTGGTTGGCCTAGCGCT
GATTATGCTGCATGCCATCCGGCACGGCGCCGCAGTAGCAGCAGCAGAAG
CAGGAGTGGAGGGAATGATCAAAGCATATCCTTCTGGTGATGACGTGCTG
GTTGGAGAGGGAGATGTGGAGATGGCCACCACCGCAAGTATGCGCAAGAG
CTCGTCGGTTGCTGGGGTAGCACCACCGCCCAAGCCACCGTCGCGGCGGG
GTAGGCTTTGA
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Synonyms
Publications