jgi.p|Nanoce1779_2|600538, mRNA_7923 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600538
Unique Name	mRNA_7923
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2062
Alignment location	scaffold_22:179611..181672 -

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Properties


Property Name	Value
TranscriptId	600624
Track	FilteredModels2
ProteinId	600538

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:179611..181672 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600538	gene_7923	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600538	mRNA_7923-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7923	CDS_7923	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:179611..181672-
coding sequence from alignment at scaffold_22:179611..181672-

mRNA sequence

>mRNA_7923 ID=mRNA_7923|Name=jgi.p|Nanoce1779_2|600538|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
GGTGGTTGGCCTAGCGCTGATTATGCTGCATGCCATCCGGCACGGCGCCG
CAGTAGCAGCAGCAGAAGCAGGAGTGGAGGGAATGATCAAAGCATATCCT
TCTGGTGATGACGTGCTGGTTGGAGAGGGAGATGTGGAGATGGCCACCAC
CGCAAGTATGCGCAAGAGCTCGTCGGTTGCTGGGGTAGCACCACCGCCCA
AGCCACCGTCGCGGCGGGGTAGGCTTTGAGGGAACTGCAATAATCAGAAT
GTTGAGGGATTGATTGAGAATGCGGAAATAGATTGAACGCGGGGATAGGA
ACCCCTAAAAATACACCCCCCAAATAAAGTACAAGAGCCTCGAGGTTACC
ACTGCAAAGCTATCTCCTGCTTTGATGCAGGAAAAATAAAAGCATACACG
AATTCTAGGTGAATGACTCAATAAGAATAAATTACCGGAAAGAAAAAAAT
ATTTTTCGATGACTCGCTCGATGTGTAAAGCCATTTCTGCCTCCGTGGGC
CGTGACGCTATGAAGATTGAATGCTTTCGGGGCTCACTACGGTGGTGGCG
ATGATAATGATTATGGAAACGATTATGACGATGCTTCTGCTGCTGGTGTC
AGAGATGCTATTGTTGCTGCAGACCGAAGGCAATCGCCAGTGTAAAAGAA
ATTAGGGTAACCCAGTACAAGGGTCTGGGGCGCGTTTTGGTCGGAGGCCC
CAATGGGGGGTGCTGCCTCCTGAATTGTGAACTGTCCGCGTTGCGATTAT
TTTTTGGGACATTGCCTTATCATATCATGCTTCTTGTGCCCTCGATTGAG
AGTGATCATCAGCTGTTATTTTGTGTGATAATAGTTATTAAATATTTTAA
TTCGTTCTATTGTTGCAGTGGCCCATCAACCTCCTGCCCTGGTCCCGGCC
GGCCTGCTTCTGTGTTTAACACTCTCCATGCCCAGCTGACACAACCGCCA
CAATCACGCAAATACATAGAAAATACATCCTCATCACCAACTTTCCAACA
GCAAAAATAGCGCAAATATAGGGTCGACCGCGCCTAAGGTCAGCGTCGCT
CGTCCGAAGCTGCACACCAACATGTCCCGCCATAATCAAGACGTACCGCT
GCCGCAAACCGCAACGCCCGCCGCAAGCCGCACTTACACGGATAGCCACA
CCAGTTTCCCATTCCCTCAGAAACGACAGCCTATGCGGTCGTCGTCCATC
CTGCACCGTCGTCTTCTCGCCCTCCAAGCGGCCCTGGACCCTCCTCCGCC
TGTACTCCGCCACCCGCCGCCGTCGACAGTCCTCGTGGAACCAACCCTTC
TCACCACCAGCACGACCACGTCAACCTCGTCGACCCCGCAAGAGCTACAT
GCCATCCTTACAGCACAGGAACAGGAGTTGCGAGGTACGCCAGCCGAGAA
CAAACCCGTCGACAAGGGCGTGCGGCATTTTGAGAGTGCCCTTAAAAAGG
CTGCGCGGGAAAATCAGCAACTCTCTAATAAGGTCAAGAGCTTGGAAGCA
GCGCTGGCTTTGGCCAAGAATCAAAAAATAAATAGGGAGGGCTTAGGGAT
GCGGCATGCTCAACGTGCGAGGCGAGTGGAAGAGGCTCTGATTGACACGA
AGCGGGCGATGACGATTTTTCTGTCTGCAGCTCAGGGGACGGACGTGCGT
CTGCAGCAGTTACAGGAAAATGAAAAGCGACTGAAAGATACTTTGATCAA
GGAGCAAACTGCACGGACTGAAGACATGGCTAGAGCACAAGCATTAAATA
AGAGGTTGGAAGGGCAGGTACGGCAGCTGGAGAAGGAAAAGGAGGGGTTG
CGGGAGGCATTTGGGAAGCAGGGAGAGTTAATGAAAGTGCTTCGACGACA
GACGCAGCATTTGCAGGCGGCTCAGCTCTTATCGTTTACAGAAAAGGACT
TAAATCGCTTGGTGCTGGATTGGCAACGTGCATTTGCATCAGGCGAGGAA
GTGAGCAGGAAGAGTAAAATAACGAGATGAAATGAGAGGATTTTAACAAA
CCTTTAGAGGAGGGAGGCAAAGCAAAAGTGAAGGCGGCGCAATAACCGCT
AAATTCTCTGAC

protein sequence of jgi.p|Nanoce1779_2|600538

>mRNA_7923-protein ID=mRNA_7923-protein|Name=jgi.p|Nanoce1779_2|600538|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MSRHNQDVPLPQTATPAASRTYTDSHTSFPFPQKRQPMRSSSILHRRLLA
LQAALDPPPPVLRHPPPSTVLVEPTLLTTSTTTSTSSTPQELHAILTAQE
QELRGTPAENKPVDKGVRHFESALKKAARENQQLSNKVKSLEAALALAKN
QKINREGLGMRHAQRARRVEEALIDTKRAMTIFLSAAQGTDVRLQQLQEN
EKRLKDTLIKEQTARTEDMARAQALNKRLEGQVRQLEKEKEGLREAFGKQ
GELMKVLRRQTQHLQAAQLLSFTEKDLNRLVLDWQRAFASGEEVSRKSKI
TR*

mRNA from alignment at scaffold_22:179611..181672-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7923 ID=mRNA_7923|Name=jgi.p|Nanoce1779_2|600538|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at scaffold_22:179611..181672- (Nannochloropsis oceanica)
GGTGGTTGGCCTAGCGCTGATTATGCTGCATGCCATCCGGCACGGCGCCG
CAGTAGCAGCAGCAGAAGCAGGAGTGGAGGGAATGATCAAAGCATATCCT
TCTGGTGATGACGTGCTGGTTGGAGAGGGAGATGTGGAGATGGCCACCAC
CGCAAGTATGCGCAAGAGCTCGTCGGTTGCTGGGGTAGCACCACCGCCCA
AGCCACCGTCGCGGCGGGGTAGGCTTTGAGGGAACTGCAATAATCAGAAT
GTTGAGGGATTGATTGAGAATGCGGAAATAGATTGAACGCGGGGATAGGA
ACCCCTAAAAATACACCCCCCAAATAAAGTACAAGAGCCTCGAGGTTACC
ACTGCAAAGCTATCTCCTGCTTTGATGCAGGAAAAATAAAAGCATACACG
AATTCTAGGTGAATGACTCAATAAGAATAAATTACCGGAAAGAAAAAAAT
ATTTTTCGATGACTCGCTCGATGTGTAAAGCCATTTCTGCCTCCGTGGGC
CGTGACGCTATGAAGATTGAATGCTTTCGGGGCTCACTACGGTGGTGGCG
ATGATAATGATTATGGAAACGATTATGACGATGCTTCTGCTGCTGGTGTC
AGAGATGCTATTGTTGCTGCAGACCGAAGGCAATCGCCAGTGTAAAAGAA
ATTAGGGTAACCCAGTACAAGGGTCTGGGGCGCGTTTTGGTCGGAGGCCC
CAATGGGGGGTGCTGCCTCCTGAATTGTGAACTGTCCGCGTTGCGATTAT
TTTTTGGGACATTGCCTTATCATATCATGCTTCTTGTGCCCTCGATTGAG
AGTGATCATCAGCTGTTATTTTGTGTGATAATAGTTATTAAATATTTTAA
TTCGTTCTATTGTTGCAGTGGCCCATCAACCTCCTGCCCTGGTCCCGGCC
GGCCTGCTTCTGTGTTTAACACTCTCCATGCCCAGCTGACACAACCGCCA
CAATCACGCAAATACATAGAAAATACATCCTCATCACCAACTTTCCAACA
GCAAAAATAGCGCAAATATAGGGTCGACCGCGCCTAAGGTCAGCGTCGCT
CGTCCGAAGCTGCACACCAACATGTCCCGCCATAATCAAGACGTACCGCT
GCCGCAAACCGCAACGCCCGCCGCAAGCCGCACTTACACGGATAGCCACA
CCAGTTTCCCATTCCCTCAGAAACGACAGCCTATGCGGTCGTCGTCCATC
CTGCACCGTCGTCTTCTCGCCCTCCAAGCGGCCCTGGACCCTCCTCCGCC
TGTACTCCGCCACCCGCCGCCGTCGACAGTCCTCGTGGAACCAACCCTTC
TCACCACCAGCACGACCACGTCAACCTCGTCGACCCCGCAAGAGCTACAT
GCCATCCTTACAGCACAGGAACAGGAGTTGCGAGGTACGCCAGCCGAGAA
CAAACCCGTCGACAAGGGCGTGCGGCATTTTGAGAGTGCCCTTAAAAAGG
CTGCGCGGGAAAATCAGCAACTCTCTAATAAGGTCAAGAGCTTGGAAGCA
GCGCTGGCTTTGGCCAAGAATCAAAAAATAAATAGGGAGGGCTTAGGGAT
GCGGCATGCTCAACGTGCGAGGCGAGTGGAAGAGGCTCTGATTGACACGA
AGCGGGCGATGACGATTTTTCTGTCTGCAGCTCAGGGGACGGACGTGCGT
CTGCAGCAGTTACAGGAAAATGAAAAGCGACTGAAAGATACTTTGATCAA
GGAGCAAACTGCACGGACTGAAGACATGGCTAGAGCACAAGCATTAAATA
AGAGGTTGGAAGGGCAGGTACGGCAGCTGGAGAAGGAAAAGGAGGGGTTG
CGGGAGGCATTTGGGAAGCAGGGAGAGTTAATGAAAGTGCTTCGACGACA
GACGCAGCATTTGCAGGCGGCTCAGCTCTTATCGTTTACAGAAAAGGACT
TAAATCGCTTGGTGCTGGATTGGCAACGTGCATTTGCATCAGGCGAGGAA
GTGAGCAGGAAGAGTAAAATAACGAGATGAAATGAGAGGATTTTAACAAA
CCTTTAGAGGAGGGAGGCAAAGCAAAAGTGAAGGCGGCGCAATAACCGCT
AAATTCTCTGAC

Coding sequence (CDS) from alignment at scaffold_22:179611..181672-

>mRNA_7923 ID=mRNA_7923|Name=jgi.p|Nanoce1779_2|600538|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_22:179611..181672- (Nannochloropsis oceanica)
ATGTCCCGCCATAATCAAGACGTACCGCTGCCGCAAACCGCAACGCCCGC
CGCAAGCCGCACTTACACGGATAGCCACACCAGTTTCCCATTCCCTCAGA
AACGACAGCCTATGCGGTCGTCGTCCATCCTGCACCGTCGTCTTCTCGCC
CTCCAAGCGGCCCTGGACCCTCCTCCGCCTGTACTCCGCCACCCGCCGCC
GTCGACAGTCCTCGTGGAACCAACCCTTCTCACCACCAGCACGACCACGT
CAACCTCGTCGACCCCGCAAGAGCTACATGCCATCCTTACAGCACAGGAA
CAGGAGTTGCGAGGTACGCCAGCCGAGAACAAACCCGTCGACAAGGGCGT
GCGGCATTTTGAGAGTGCCCTTAAAAAGGCTGCGCGGGAAAATCAGCAAC
TCTCTAATAAGGTCAAGAGCTTGGAAGCAGCGCTGGCTTTGGCCAAGAAT
CAAAAAATAAATAGGGAGGGCTTAGGGATGCGGCATGCTCAACGTGCGAG
GCGAGTGGAAGAGGCTCTGATTGACACGAAGCGGGCGATGACGATTTTTC
TGTCTGCAGCTCAGGGGACGGACGTGCGTCTGCAGCAGTTACAGGAAAAT
GAAAAGCGACTGAAAGATACTTTGATCAAGGAGCAAACTGCACGGACTGA
AGACATGGCTAGAGCACAAGCATTAAATAAGAGGTTGGAAGGGCAGGTAC
GGCAGCTGGAGAAGGAAAAGGAGGGGTTGCGGGAGGCATTTGGGAAGCAG
GGAGAGTTAATGAAAGTGCTTCGACGACAGACGCAGCATTTGCAGGCGGC
TCAGCTCTTATCGTTTACAGAAAAGGACTTAAATCGCTTGGTGCTGGATT
GGCAACGTGCATTTGCATCAGGCGAGGAAGTGAGCAGGAAGAGTAAAATA
ACGAGATGA

Synonyms

Publications