jgi.p|Nanoce1779_2|600520, mRNA_7916 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600520
Unique NamemRNA_7916
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1143
Alignment locationscaffold_22:165197..166339 +

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Properties
Property NameValue
TranscriptId600606
TrackFilteredModels2
ProteinId600520
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:165197..166339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600520gene_7916Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600520mRNA_7916-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7916CDS_7916Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7916 ID=mRNA_7916|Name=jgi.p|Nanoce1779_2|600520|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
GTCGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCCGTCGTCGG
AGAGCAGCGGCGAGAGGGAGGGCTGTAGGGCTTGCATAGCTTCCTCGTGG
GATGCTACTACACTTGCTCTTGCCTTTCTTGCTGCTGCTGCTGCTGCTGC
CCCTACTGTTGTTGCTGCTGTTGCTGCCAATACTACTGACACTACTCATA
CTGGAGAAAGACGATTGCGGTGGTTGTGGTGGTGGTTGTACTAATGGCGG
TGGTGGTGCGGCTGCTGTTGGTGCTGGTGTTGGCGATCTGATAGGAGGCA
CAGTCACTCGCTGTACACGCACCGTGTCTAATAAATGAGCCGAGCCCTTT
TGCCTCTCTCCCTCCAGCACTTCTTCCTCCTCAAGCAGCACATTGCGAAC
GGCCTCTCGAAGCATGTTCTCCAAGCGACGCAGGATTGCAGCTTCCTCTT
CCTCCTCTCCCTCGTCTTCCTCATGGTCGAGGGCCCCTCCATTTTTCTGC
TCATACTGGCGTGGCGCAGACTCGCTTACATTCTGTCCTGGTGGCCTTGG
TCGTTTTTTACCCTTGCTGACATTTCTGCGGTTACCCCTTGCATCCACTG
TCCCTCCGCCTCTTTCTCCTCCTCCTCCTCTATCTCCTCCTCTACCTCCC
TCTCCTTCCCCTATTCTCTTTCCGGCCCTTCCGTCTATCAAGCGCTGAAT
CTTTCCCGCCAACTGCCTCTGGGACTTCGACGGATGGAAACCGTCTACTT
CCAATCTAATCGTATAGCACGGACAGCAAGTCTCAGCATTGACAGGCCGG
TACAGAAAGTTACCTGAACGCCGCCACCCCAGATCGATCAATTCCTGATA
ATCCTCACACAACAAACGCTTGGCACTCAACCCAAACGAGACACTGGTAT
GGCTCCTACCCCTAGCGGTCTTAGTTTTGCAGTACCCGCATCGCCCCACG
TGTTTCCCACAGAGCTCGACGATGGACTGTTGGGGAGGCGCGGGGGGAAG
GGAAGGAGCAGAGGGAGGTCGCAGAATGTTGCTGCTGCTTGACTGCTTCC
AACCGCTGCTGCTGTTACCCCCGCATGGTGGAAGTAATGAAGGTGGACGA
TCACTTGCCGGTGGTGGTCCAGGGCATTTGTCTTCCTACCTGT
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protein sequence of jgi.p|Nanoce1779_2|600520

>mRNA_7916-protein ID=mRNA_7916-protein|Name=jgi.p|Nanoce1779_2|600520|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSRALLPLSLQHFFLLKQHIANGLSKHVLQATQDCSFLFLLSLVFLMVEG
PSIFLLILAWRRLAYILSWWPWSFFTLADISAVTPCIHCPSASFSSSSSI
SSSTSLSFPYSLSGPSVYQALNLSRQLPLGLRRMETVYFQSNRIARTASL
SIDRPVQKVT*
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mRNA from alignment at scaffold_22:165197..166339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7916 ID=mRNA_7916|Name=jgi.p|Nanoce1779_2|600520|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at scaffold_22:165197..166339+ (Nannochloropsis oceanica)
GTCGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCCGTCGTCGG
AGAGCAGCGGCGAGAGGGAGGGCTGTAGGGCTTGCATAGCTTCCTCGTGG
GATGCTACTACACTTGCTCTTGCCTTTCTTGCTGCTGCTGCTGCTGCTGC
CCCTACTGTTGTTGCTGCTGTTGCTGCCAATACTACTGACACTACTCATA
CTGGAGAAAGACGATTGCGGTGGTTGTGGTGGTGGTTGTACTAATGGCGG
TGGTGGTGCGGCTGCTGTTGGTGCTGGTGTTGGCGATCTGATAGGAGGCA
CAGTCACTCGCTGTACACGCACCGTGTCTAATAAATGAGCCGAGCCCTTT
TGCCTCTCTCCCTCCAGCACTTCTTCCTCCTCAAGCAGCACATTGCGAAC
GGCCTCTCGAAGCATGTTCTCCAAGCGACGCAGGATTGCAGCTTCCTCTT
CCTCCTCTCCCTCGTCTTCCTCATGGTCGAGGGCCCCTCCATTTTTCTGC
TCATACTGGCGTGGCGCAGACTCGCTTACATTCTGTCCTGGTGGCCTTGG
TCGTTTTTTACCCTTGCTGACATTTCTGCGGTTACCCCTTGCATCCACTG
TCCCTCCGCCTCTTTCTCCTCCTCCTCCTCTATCTCCTCCTCTACCTCCC
TCTCCTTCCCCTATTCTCTTTCCGGCCCTTCCGTCTATCAAGCGCTGAAT
CTTTCCCGCCAACTGCCTCTGGGACTTCGACGGATGGAAACCGTCTACTT
CCAATCTAATCGTATAGCACGGACAGCAAGTCTCAGCATTGACAGGCCGG
TACAGAAAGTTACCTGAACGCCGCCACCCCAGATCGATCAATTCCTGATA
ATCCTCACACAACAAACGCTTGGCACTCAACCCAAACGAGACACTGGTAT
GGCTCCTACCCCTAGCGGTCTTAGTTTTGCAGTACCCGCATCGCCCCACG
TGTTTCCCACAGAGCTCGACGATGGACTGTTGGGGAGGCGCGGGGGGAAG
GGAAGGAGCAGAGGGAGGTCGCAGAATGTTGCTGCTGCTTGACTGCTTCC
AACCGCTGCTGCTGTTACCCCCGCATGGTGGAAGTAATGAAGGTGGACGA
TCACTTGCCGGTGGTGGTCCAGGGCATTTGTCTTCCTACCTGT
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Coding sequence (CDS) from alignment at scaffold_22:165197..166339+

>mRNA_7916 ID=mRNA_7916|Name=jgi.p|Nanoce1779_2|600520|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_22:165197..166339+ (Nannochloropsis oceanica)
ATGAGCCGAGCCCTTTTGCCTCTCTCCCTCCAGCACTTCTTCCTCCTCAA
GCAGCACATTGCGAACGGCCTCTCGAAGCATGTTCTCCAAGCGACGCAGG
ATTGCAGCTTCCTCTTCCTCCTCTCCCTCGTCTTCCTCATGGTCGAGGGC
CCCTCCATTTTTCTGCTCATACTGGCGTGGCGCAGACTCGCTTACATTCT
GTCCTGGTGGCCTTGGTCGTTTTTTACCCTTGCTGACATTTCTGCGGTTA
CCCCTTGCATCCACTGTCCCTCCGCCTCTTTCTCCTCCTCCTCCTCTATC
TCCTCCTCTACCTCCCTCTCCTTCCCCTATTCTCTTTCCGGCCCTTCCGT
CTATCAAGCGCTGAATCTTTCCCGCCAACTGCCTCTGGGACTTCGACGGA
TGGAAACCGTCTACTTCCAATCTAATCGTATAGCACGGACAGCAAGTCTC
AGCATTGACAGGCCGGTACAGAAAGTTACCTGA
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Synonyms
Publications