jgi.p|Nanoce1779_2|176324, mRNA_7915 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|176324
Unique NamemRNA_7915
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1945
Alignment locationscaffold_22:163084..165028 -

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Properties
Property NameValue
TranscriptId176410
TrackFilteredModels2
ProteinId176324
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:163084..165028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176324gene_7915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176324mRNA_7915-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7915CDS_7915Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Nanoce1779_2|176324|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
AACAACAACAACAACAACAACAACAACCTAGAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACTACAACAACAACAACAAC
AACAACAGGAGAAGGAGCAATCAGCAGCACCACCAGCAGCAACAATAACA
CCGGTTGCCCTTGCCGAACGCCTCAAAACGTTTCTGCTCAATTCACCCAC
GTCCACTTCTTCCTTGGGCGGCAGGGGGGGGATGGAGGAAGGGGATGGAG
GGGGCTTGCTAGCTACCGTGAGTGTGGCTTCAAACGGTTTCTTGAATTTT
ACCGTACGTTGTCCCCCTTCTATCCGAAAGGAGGTAGGGAAGGAAGAGAG
AGAGGACGGGGGGGGTACCAAGAAAAGGAGAAGGAGTAGTGCCGTCGTTA
GCGTCAAGCAGCAGCAGCAGTAGCAGCAGCAGCAATACGGAGAATGGTCA
GTTAGGAGGACCAAAAGGCAGCACGAGGACGAGGAATGAAGGGAAGAAAG
GGATGATAGGGAGTAACTGCTCCAGCACCAGCAACAGGAATGATGACACT
GTGGCTATGGAGGAGGAGGTGGAGACAGTCGCAGCAAAAGCAGCAACAGC
AGGAAGAGCAAGAGGCGCATTGTTGTCCTCGAGGATGAAGGTGGAGGAGG
ACGAGGGAGAGAGGAAGGAGGAGGGGTCTATGAAGGTCGACGAGTACGAG
GACGAGGACGAGGAAGTGAGGAAAGGCGGGTCCATAACCCCCAACCGAAC
AAGACACAACGGGAAAATCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTGCTCTCCCTCCTCCCCCTCCTCCTCCTCTTCGCAACCCTTC
AACCTACACGTCGAAACCGTCGTCCCCCGCGTAACGGACGAAACGTTTCT
ACTCTACAAGAGGTACCAGGTGGCAATCCACAATGACAAACCCGAAGACG
TGACCAGAGAAGGCTTCAGGCGCTTCCTCGTCTCTTCCCCTCTTGTCCCC
TCTCCTCTCCCGTCTTTCTATCCTTCCTCCTCGGAAGAGGACAAGGAATA
TTGTCTCCCCTGCGGTAGCTACCACCAGCTGTACCGGCTCAACGGCAAGC
TAATTGCTGTTGGTGTGGTGGACCTCCTCCCTCGCTGCCTCTCGTCCGTC
TACTGCTTCTATGACCCCGACTATCGTCATCTCTCCCTCGGAAAATACAC
GGCGCTGCGGGAAATCGCCTGGGTGCAGCGTGCGCATGCCCGTCGCCCTG
CCCTCCCTCCCTCTCTCCCTCCCTCCCTCCTTCCTCCTGGCGCCCGCTTC
GGTGATTCTAAGCTGACTGGTTCCAGCGATGGGGAAGAGCCCCCTTCCTT
TCTTGCCCCATTTCGTCCCGACCTTCAGTATTATTACTTGGGGTATTACA
TCCATTCGTGTCCTAAGATGCGGTACAAGGGTAATTATGAGCCATCGGAG
CTTCTGTGTCCCGTAACGGGGGCATGGGTGCCGTTGGATGATCGTGTGAG
GAGGAAGTTGGATGGAACGCCATATTGCCGTTTGCTTGAGGAGGAGGGGG
AAGGGTGCGAGGAGGAGGGGAGAGGGGAGAAGAAGGAGGAGGAGATGAAG
GGTGGAGGGAGGAAGAGGAGGGGGGGTGGGGAGGAGGAGGAGAAGGAGGA
GGAAGAGGAGGAGGAGGAGGAGGGAGAGGTGGAAATGGAGGAGGAGGATG
AGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGCGGAGTATGGGTTGGGG
AAGCCGTTAACGGTAGAGGAACGGGTGGCATTGCAACGGATAGAGATGGA
CGTTGGTTCCCTCCTGTCGTTGCCTGCTCGAAGTCAGCAGGTGCTGATAC
CGATTTTGAGGGAGTTTATCGCGCATGTCTCCCCTGCCTTGGCGCCGCGG
TTGATGATCAAGTTGCGGCAATAGTCCTCCTTCCCCCCCCACCCC
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protein sequence of jgi.p|Nanoce1779_2|176324

>mRNA_7915-protein ID=mRNA_7915-protein|Name=jgi.p|Nanoce1779_2|176324|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MIGSNCSSTSNRNDDTVAMEEEVETVAAKAATAGRARGALLSSRMKVEED
EGERKEEGSMKVDEYEDEDEEVRKGGSITPNRTRHNGKISPSSSSSSSSS
SSCSPSSPSSSSSQPFNLHVETVVPRVTDETFLLYKRYQVAIHNDKPEDV
TREGFRRFLVSSPLVPSPLPSFYPSSSEEDKEYCLPCGSYHQLYRLNGKL
IAVGVVDLLPRCLSSVYCFYDPDYRHLSLGKYTALREIAWVQRAHARRPA
LPPSLPPSLLPPGARFGDSKLTGSSDGEEPPSFLAPFRPDLQYYYLGYYI
HSCPKMRYKGNYEPSELLCPVTGAWVPLDDRVRRKLDGTPYCRLLEEEGE
GCEEEGRGEKKEEEMKGGGRKRRGGGEEEEKEEEEEEEEEGEVEMEEEDE
EEEEDEEEEEAEYGLGKPLTVEERVALQRIEMDVGSLLSLPARSQQVLIP
ILREFIAHVSPALAPRLMIKLRQ*
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mRNA from alignment at scaffold_22:163084..165028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Nanoce1779_2|176324|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_22:163084..165028- (Nannochloropsis oceanica)
AACAACAACAACAACAACAACAACAACCTAGAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACTACAACAACAACAACAAC
AACAACAGGAGAAGGAGCAATCAGCAGCACCACCAGCAGCAACAATAACA
CCGGTTGCCCTTGCCGAACGCCTCAAAACGTTTCTGCTCAATTCACCCAC
GTCCACTTCTTCCTTGGGCGGCAGGGGGGGGATGGAGGAAGGGGATGGAG
GGGGCTTGCTAGCTACCGTGAGTGTGGCTTCAAACGGTTTCTTGAATTTT
ACCGTACGTTGTCCCCCTTCTATCCGAAAGGAGGTAGGGAAGGAAGAGAG
AGAGGACGGGGGGGGTACCAAGAAAAGGAGAAGGAGTAGTGCCGTCGTTA
GCGTCAAGCAGCAGCAGCAGTAGCAGCAGCAGCAATACGGAGAATGGTCA
GTTAGGAGGACCAAAAGGCAGCACGAGGACGAGGAATGAAGGGAAGAAAG
GGATGATAGGGAGTAACTGCTCCAGCACCAGCAACAGGAATGATGACACT
GTGGCTATGGAGGAGGAGGTGGAGACAGTCGCAGCAAAAGCAGCAACAGC
AGGAAGAGCAAGAGGCGCATTGTTGTCCTCGAGGATGAAGGTGGAGGAGG
ACGAGGGAGAGAGGAAGGAGGAGGGGTCTATGAAGGTCGACGAGTACGAG
GACGAGGACGAGGAAGTGAGGAAAGGCGGGTCCATAACCCCCAACCGAAC
AAGACACAACGGGAAAATCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTGCTCTCCCTCCTCCCCCTCCTCCTCCTCTTCGCAACCCTTC
AACCTACACGTCGAAACCGTCGTCCCCCGCGTAACGGACGAAACGTTTCT
ACTCTACAAGAGGTACCAGGTGGCAATCCACAATGACAAACCCGAAGACG
TGACCAGAGAAGGCTTCAGGCGCTTCCTCGTCTCTTCCCCTCTTGTCCCC
TCTCCTCTCCCGTCTTTCTATCCTTCCTCCTCGGAAGAGGACAAGGAATA
TTGTCTCCCCTGCGGTAGCTACCACCAGCTGTACCGGCTCAACGGCAAGC
TAATTGCTGTTGGTGTGGTGGACCTCCTCCCTCGCTGCCTCTCGTCCGTC
TACTGCTTCTATGACCCCGACTATCGTCATCTCTCCCTCGGAAAATACAC
GGCGCTGCGGGAAATCGCCTGGGTGCAGCGTGCGCATGCCCGTCGCCCTG
CCCTCCCTCCCTCTCTCCCTCCCTCCCTCCTTCCTCCTGGCGCCCGCTTC
GGTGATTCTAAGCTGACTGGTTCCAGCGATGGGGAAGAGCCCCCTTCCTT
TCTTGCCCCATTTCGTCCCGACCTTCAGTATTATTACTTGGGGTATTACA
TCCATTCGTGTCCTAAGATGCGGTACAAGGGTAATTATGAGCCATCGGAG
CTTCTGTGTCCCGTAACGGGGGCATGGGTGCCGTTGGATGATCGTGTGAG
GAGGAAGTTGGATGGAACGCCATATTGCCGTTTGCTTGAGGAGGAGGGGG
AAGGGTGCGAGGAGGAGGGGAGAGGGGAGAAGAAGGAGGAGGAGATGAAG
GGTGGAGGGAGGAAGAGGAGGGGGGGTGGGGAGGAGGAGGAGAAGGAGGA
GGAAGAGGAGGAGGAGGAGGAGGGAGAGGTGGAAATGGAGGAGGAGGATG
AGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGCGGAGTATGGGTTGGGG
AAGCCGTTAACGGTAGAGGAACGGGTGGCATTGCAACGGATAGAGATGGA
CGTTGGTTCCCTCCTGTCGTTGCCTGCTCGAAGTCAGCAGGTGCTGATAC
CGATTTTGAGGGAGTTTATCGCGCATGTCTCCCCTGCCTTGGCGCCGCGG
TTGATGATCAAGTTGCGGCAATAGTCCTCCTTCCCCCCCCACCCC
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Coding sequence (CDS) from alignment at scaffold_22:163084..165028-

>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Nanoce1779_2|176324|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_22:163084..165028- (Nannochloropsis oceanica)
ATGATAGGGAGTAACTGCTCCAGCACCAGCAACAGGAATGATGACACTGT
GGCTATGGAGGAGGAGGTGGAGACAGTCGCAGCAAAAGCAGCAACAGCAG
GAAGAGCAAGAGGCGCATTGTTGTCCTCGAGGATGAAGGTGGAGGAGGAC
GAGGGAGAGAGGAAGGAGGAGGGGTCTATGAAGGTCGACGAGTACGAGGA
CGAGGACGAGGAAGTGAGGAAAGGCGGGTCCATAACCCCCAACCGAACAA
GACACAACGGGAAAATCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCTTGCTCTCCCTCCTCCCCCTCCTCCTCCTCTTCGCAACCCTTCAA
CCTACACGTCGAAACCGTCGTCCCCCGCGTAACGGACGAAACGTTTCTAC
TCTACAAGAGGTACCAGGTGGCAATCCACAATGACAAACCCGAAGACGTG
ACCAGAGAAGGCTTCAGGCGCTTCCTCGTCTCTTCCCCTCTTGTCCCCTC
TCCTCTCCCGTCTTTCTATCCTTCCTCCTCGGAAGAGGACAAGGAATATT
GTCTCCCCTGCGGTAGCTACCACCAGCTGTACCGGCTCAACGGCAAGCTA
ATTGCTGTTGGTGTGGTGGACCTCCTCCCTCGCTGCCTCTCGTCCGTCTA
CTGCTTCTATGACCCCGACTATCGTCATCTCTCCCTCGGAAAATACACGG
CGCTGCGGGAAATCGCCTGGGTGCAGCGTGCGCATGCCCGTCGCCCTGCC
CTCCCTCCCTCTCTCCCTCCCTCCCTCCTTCCTCCTGGCGCCCGCTTCGG
TGATTCTAAGCTGACTGGTTCCAGCGATGGGGAAGAGCCCCCTTCCTTTC
TTGCCCCATTTCGTCCCGACCTTCAGTATTATTACTTGGGGTATTACATC
CATTCGTGTCCTAAGATGCGGTACAAGGGTAATTATGAGCCATCGGAGCT
TCTGTGTCCCGTAACGGGGGCATGGGTGCCGTTGGATGATCGTGTGAGGA
GGAAGTTGGATGGAACGCCATATTGCCGTTTGCTTGAGGAGGAGGGGGAA
GGGTGCGAGGAGGAGGGGAGAGGGGAGAAGAAGGAGGAGGAGATGAAGGG
TGGAGGGAGGAAGAGGAGGGGGGGTGGGGAGGAGGAGGAGAAGGAGGAGG
AAGAGGAGGAGGAGGAGGAGGGAGAGGTGGAAATGGAGGAGGAGGATGAG
GAGGAGGAGGAGGATGAGGAGGAGGAGGAGGCGGAGTATGGGTTGGGGAA
GCCGTTAACGGTAGAGGAACGGGTGGCATTGCAACGGATAGAGATGGACG
TTGGTTCCCTCCTGTCGTTGCCTGCTCGAAGTCAGCAGGTGCTGATACCG
ATTTTGAGGGAGTTTATCGCGCATGTCTCCCCTGCCTTGGCGCCGCGGTT
GATGATCAAGTTGCGGCAATAG
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Synonyms
Publications