jgi.p|Nanoce1779_2|600505, mRNA_7914 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600505
Unique NamemRNA_7914
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length846
Alignment locationscaffold_22:158994..160227 -

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Properties
Property NameValue
TranscriptId600591
TrackFilteredModels2
ProteinId600505
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:158994..160227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600505gene_7914Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600505mRNA_7914-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7914CDS_7914Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7914 ID=mRNA_7914|Name=jgi.p|Nanoce1779_2|600505|organism=Nannochloropsis oceanica|type=mRNA|length=846bp
CAACAGCACAGGTACAAGCAAGCAGCCATGCGGATTGTCAAGTGCTACTT
CTGCTCCGGCCCCATGTATCCGGGCCACGGCACCACCTTTGTCCGCAATG
ACGCCAAGGTGTTCAACTTTTGCCGCTCCAAGTGCCACCGGAACTTTAAT
AAGAAGCGCAATCCTCGCAAGACCCGCTGGACCAAGGCATACCGCAAGGC
CGCAGGGAAAGAGATGGTTGTTGACGCAACGTTTGATTTCGAGAAGAGGA
GGAACCGTCCGATCAAGTATGATAGGGAACTGGTCGGTAAGACGATCCAG
GCCATGCACAAGCTCCGTTCTATTCAGTCTCGACGAGAAGAGGTGTTTTA
CCAGACGAGGATGCGCGAGGCCAAGATGAAGGAGAAGGCCGCATTGCAAG
TCGAGGTGCGGGAGAGCATCGAACTATTGGCACCAGCAGCGGCGTCGCGC
GAGAAGGCACTGCTCAACGTCCGGGAGAAAGTCAAGGAGAGGCATGCGGT
CCGGGCAGCGGCCAGGGGAGGGGGGGATGGGAAGAAAGGAGCGAGAGGAC
GGCGGGAAGTGCCCACGGGCGAAGGGGAGATCATGGATGTCAATTAAGAG
GAGACGTCCCCCGATGGGGGAGGGAGGAAAGGAGAGAAGCACGCGCTGTC
TCTTCCCTTTTCGTTAGATGAGGTCAAATTGCAATTTTTGTGTACAAATG
AGACGCGTTACTTCTCACTCATGTTCCAGCTGACGTGTGGAAGTGGATAG
AGGGAAGGCTGCGCGCGAGGCAGGACAATGACCAGGGAAACAGACAGAGA
CAACAGAAGCAGACGGAAAAGCAAATTAGCATTCTTTATCTATGTA
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protein sequence of jgi.p|Nanoce1779_2|600505

>mRNA_7914-protein ID=mRNA_7914-protein|Name=jgi.p|Nanoce1779_2|600505|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MRIVKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTR
WTKAYRKAAGKEMVVDATFDFEKRRNRPIKYDRELVGKTIQAMHKLRSIQ
SRREEVFYQTRMREAKMKEKAALQVEVRESIELLAPAAASREKALLNVRE
KVKERHAVRAAARGGGDGKKGARGRREVPTGEGEIMDVN*
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mRNA from alignment at scaffold_22:158994..160227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7914 ID=mRNA_7914|Name=jgi.p|Nanoce1779_2|600505|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp|location=Sequence derived from alignment at scaffold_22:158994..160227- (Nannochloropsis oceanica)
CAACAGCACAGGTACAAGCAAGCAGCCATGCGGATTGTCAAGTGCTACTT
CTGCTCCGGCCCCATGTATCCGGGCCACGGCACCACCTTTGTCCGCAATG
ACGCCAAGGTATGTGTGTATATACGCGTGCACGTGTGCATTGTGCGTGCT
CTCCTCTCTCATATCTCTTTCTGTCTCTCTGGCCATTTGGGAAGTGGATT
TTGTGCCAAGCGCTCGGATGGTTTCTACTGTTAGTCCTGCATGCCATGCA
ACGTCGCAGCATCCCCCCCTCCCCCCCTCCTCTTCCCCCCTTTTCCATTC
TCCATCCCCCTCACGTTGGCGCAGCACCTCGTCGAGTTGTTAAGCTTCCG
TCCCATGAAATTTTTCGCTCTGTTTTACATCATAGCTTGAAGTGTGTTAC
GGATTGTGATGTCCATCTCATTGGTTTCTAGTCTCGTAACGTTCCTCCCT
CCCTCTCTCGCTCGCTCCCTTTCTTCCTTCCTTTCTTCCTTGCTAGGTGT
TCAACTTTTGCCGCTCCAAGTGCCACCGGAACTTTAATAAGAAGCGCAAT
CCTCGCAAGACCCGCTGGACCAAGGCATACCGCAAGGCCGCAGGGAAAGA
GATGGTTGTTGACGCAACGTTTGATTTCGAGAAGAGGAGGAACCGTCCGA
TCAAGTATGATAGGGAACTGGTCGGTAAGACGATCCAGGCCATGCACAAG
CTCCGTTCTATTCAGTCTCGACGAGAAGAGGTGTTTTACCAGACGAGGAT
GCGCGAGGCCAAGATGAAGGAGAAGGCCGCATTGCAAGTCGAGGTGCGGG
AGAGCATCGAACTATTGGCACCAGCAGCGGCGTCGCGCGAGAAGGCACTG
CTCAACGTCCGGGAGAAAGTCAAGGAGAGGCATGCGGTCCGGGCAGCGGC
CAGGGGAGGGGGGGATGGGAAGAAAGGAGCGAGAGGACGGCGGGAAGTGC
CCACGGGCGAAGGGGAGATCATGGATGTCAATTAAGAGGAGACGTCCCCC
GATGGGGGAGGGAGGAAAGGAGAGAAGCACGCGCTGTCTCTTCCCTTTTC
GTTAGATGAGGTCAAATTGCAATTTTTGTGTACAAATGAGACGCGTTACT
TCTCACTCATGTTCCAGCTGACGTGTGGAAGTGGATAGAGGGAAGGCTGC
GCGCGAGGCAGGACAATGACCAGGGAAACAGACAGAGACAACAGAAGCAG
ACGGAAAAGCAAATTAGCATTCTTTATCTATGTA
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Coding sequence (CDS) from alignment at scaffold_22:158994..160227-

>mRNA_7914 ID=mRNA_7914|Name=jgi.p|Nanoce1779_2|600505|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_22:158994..160227- (Nannochloropsis oceanica)
GTGTTCAACTTTTGCCGCTCCAAGTGCCACCGGAACTTTAATAAGAAGCG
CAATCCTCGCAAGACCCGCTGGACCAAGGCATACCGCAAGGCCGCAGGGA
AAGAGATGGTTGTTGACGCAACGTTTGATTTCGAGAAGAGGAGGAACCGT
CCGATCAAGTATGATAGGGAACTGGTCGGTAAGACGATCCAGGCCATGCA
CAAGCTCCGTTCTATTCAGTCTCGACGAGAAGAGGTGTTTTACCAGACGA
GGATGCGCGAGGCCAAGATGAAGGAGAAGGCCGCATTGCAAGTCGAGGTG
CGGGAGAGCATCGAACTATTGGCACCAGCAGCGGCGTCGCGCGAGAAGGC
ACTGCTCAACGTCCGGGAGAAAGTCAAGGAGAGGCATGCGGTCCGGGCAG
CGGCCAGGGGAGGGGGGGATGGGAAGAAAGGAGCGAGAGGACGGCGGGAA
GTGCCCACGGGCGAAGGGGAGATCATGGATGTCAATTAAATGCGGATTGT
CAAGTGCTACTTCTGCTCCGGCCCCATGTATCCGGGCCACGGCACCACCT
TTGTCCGCAATGACGCCAAGGTGTTCAACTTTTGCCGCTCCAAGTGCCAC
CGGAACTTTAATAAGAAGCGCAATCCTCGCAAGACCCGCTGGACCAAGGC
ATACCGCAAGGCCGCAGGGAAAGAGATGGTTGTTGACGCAACGTTTGATT
TCGAGAAGAGGAGGAACCGTCCGATCAAGTATGATAGGGAACTGGTCGGT
AAGACGATCCAGGCCATGCACAAGCTCCGTTCTATTCAGTCTCGACGAGA
AGAGGTGTTTTACCAGACGAGGATGCGCGAGGCCAAGATGAAGGAGAAGG
CCGCATTGCAAGTCGAGGTGCGGGAGAGCATCGAACTATTGGCACCAGCA
GCGGCGTCGCGCGAGAAGGCACTGCTCAACGTCCGGGAGAAAGTCAAGGA
GAGGCATGCGGTCCGGGCAGCGGCCAGGGGAGGGGGGGATGGGAAGAAAG
GAGCGAGAGGACGGCGGGAAGTGCCCACGGGCGAAGGGGAGATCATGGAT
GTCAATTAAATGCGGATTGTCAAGTGCTACTTCTGCTCCGGCCCCATGTA
TCCGGGCCACGGCACCACCTTTGTCCGCAATGACGCCAAG
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Synonyms
Publications