jgi.p|Nanoce1779_2|559126, mRNA_7913 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559126
Unique Name	mRNA_7913
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	873
Alignment location	scaffold_22:157837..158817 +

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Properties


Property Name	Value
TranscriptId	559212
Track	FilteredModels2
ProteinId	559126

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:157837..158817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559126	gene_7913	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559126	mRNA_7913-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7913	CDS_7913	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:157837..158817+
coding sequence from alignment at scaffold_22:157837..158817+

mRNA sequence

>mRNA_7913 ID=mRNA_7913|Name=jgi.p|Nanoce1779_2|559126|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
CCTTTCCATTCTGTCGCCAAAAAACGACTCCTTTCTCCTTCCTCCAAGTA
AAAGATGCCTACCCAAACTATGCAGCCCACCGAATCCATCTACGCTCTAC
TTCCTAAGCCTGCGCCTATCCCACCCACCCGCACCATCTACCGCTCCCTC
AAATTGCAAGCCGCCCGGAAGTTCCCACCACTCGCGTCAACCTTTGGCTG
CTTTGGTTCCAGCCACGTTTTGGGAGCCGGGAAACCGATCAAGAAAGCAC
ACGCGCATCTCGGGCCACCCTTACGTACACAGGCGGTGGCCCCCTGTCCG
TTTTTGAGGGGAGGTGAGAAGAAACAGCGGGTCCCGGGCAAGGTGCTTGT
AAAGCCGTTTCGGTATTCAGATGCGGGCGTCCCAACCAAGGCAGGACTGC
CGAAGGTGCAACCCATAGTGGGATTGAGAAGCGACGTGGACTTTATTACA
GCAAATGCGCTGGAAGTGATTAATGAGGGGGAGGATAGGGAGGAGATGGA
TTATCTACGGAAGGCGTGCTATGGAAAGGTGCCTGCTTACCTGCGACGGG
TCCAAGCAGAAATCCAGAGGGAGGATGCCTTATTAGACGCTCTCATTCAG
AGGGAGGAGGACGAAGAGAAGGAGGGAGAAGAAGGGGTAGTAATGGAAAC
GGTGTCGGAGGGAAAACGTGTAGCCTTGGTGGTGGCATTGAAGGCAAAAT
GGGACGCAGTGAATGCGGCATATCAAAAGACGGCACATCAAGGGCAGTTT
CAGAGTGCGGGGGCGAGGCGAAGGAAGGAGCAGAACGAGAAGATCATGGA
CCAGCTGGAGCAAGACATCGAGTTGTTGGAGCTGGCTGAAGGAGGGATGC
TAGTCGTGGAAAAAAATAAATAG

protein sequence of jgi.p|Nanoce1779_2|559126

>mRNA_7913-protein ID=mRNA_7913-protein|Name=jgi.p|Nanoce1779_2|559126|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPTQTMQPTESIYALLPKPAPIPPTRTIYRSLKLQAARKFPPLASTFGCF
GSSHVLGAGKPIKKAHAHLGPPLRTQAVAPCPFLRGGEKKQRVPGKVLVK
PFRYSDAGVPTKAGLPKVQPIVGLRSDVDFITANALEVINEGEDREEMDY
LRKACYGKVPAYLRRVQAEIQREDALLDALIQREEDEEKEGEEGVVMETV
SEGKRVALVVALKAKWDAVNAAYQKTAHQGQFQSAGARRRKEQNEKIMDQ
LEQDIELLELAEGGMLVVEKNK*

mRNA from alignment at scaffold_22:157837..158817+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7913 ID=mRNA_7913|Name=jgi.p|Nanoce1779_2|559126|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at scaffold_22:157837..158817+ (Nannochloropsis oceanica)
CCTTTCCATTCTGTCGCCAAAAAACGACTCCTTTCTCCTTCCTCCAAGTA
AAAGATGCCTACCCAAACTATGCAGCCCACCGAATCCATCTACGCTCTAC
TTCCTAAGCCTGCGCCTATCCCACCCACCCGCACCATCTACCGCTCCCTC
AAATTGCAAGCCGCCCGGAAGTTCCCACCACTCGCGTCAACCTTTGGCTG
CTTTGGTTCCAGCCACGTTTTGGGAGCCGGGAAACCGATCAAGAAAGCAC
ACGCGCATCTCGGGCCACCCTTACGTACACAGGCGGTGGCCCCCTGTCCG
TTTTTGAGGGGAGGTGAGAAGAAACAGCGGGTCCCGGGCAAGGTGCTTGT
AAAGCCGTTTCGGTATTCAGATGCGGGCGTCCCAACCAAGGCAGGACTGC
CGAAGGTGCAACCCATAGTGGGATTGAGAAGCGACGTGGACTTTATTACA
GCAAATGCGCTGGAAGTGATTAATGAGGGGTCGAAGGACGATAAGGAGGG
CGGGAAGGAGGATGAGGGTGGCGGGAGGGAGGATAGGGAGGAGATGGATT
ATCTACGGAAGGCGTGCTATGGAAAGGTGCCTGCTTACCTGCGACGGGTC
CAAGCAGAAATCCAGAGGGAGGATGCCTTATTAGACGCTCTCATTCGTCG
TCAGCAGCAGCACCAGCACCAGCACCAGCACCGCCAGCAGAGGAAGAAGA
AGGGAGAGAGGGAGGAGGACGAAGAGAAGGAGGGAGAAGAAGGGGTAGTA
ATGGAAACGGTGTCGGAGGGAAAACGTGTAGCCTTGGTGGTGGCATTGAA
GGCAAAATGGGACGCAGTGAATGCGGCATATCAAAAGACGGCACATCAAG
GGCAGTTTCAGAGTGCGGGGGCGAGGCGAAGGAAGGAGCAGAACGAGAAG
ATCATGGACCAGCTGGAGCAAGACATCGAGTTGTTGGAGCTGGCTGAAGG
AGGGATGCTAGTCGTGGAAAAAAATAAATAG

Coding sequence (CDS) from alignment at scaffold_22:157837..158817+

>mRNA_7913 ID=mRNA_7913|Name=jgi.p|Nanoce1779_2|559126|organism=Nannochloropsis oceanica|type=CDS|length=2457bp|location=Sequence derived from alignment at scaffold_22:157837..158817+ (Nannochloropsis oceanica)
ATGCCTACCCAAACTATGCAGCCCACCGAATCCATCTACGCTCTACTTCC
TAAGCCTGCGCCTATCCCACCCACCCGCACCATCTACCGCTCCCTCAAAT
TGCAAGCCGCCCGGAAGTTCCCACCACTCGCGTCAACCTTTGGCTGCTTT
GGTTCCAGCCACGTTTTGGGAGCCGGGAAACCGATCAAGAAAGCACACGC
GCATCTCGGGCCACCCTTACGTACACAGGCGGTGGCCCCCTGTCCGTTTT
TGAGGGGAGGTGAGAAGAAACAGCGGGTCCCGGGCAAGGTGCTTGTAAAG
CCGTTTCGGTATTCAGATGCGGGCGTCCCAACCAAGGCAGGACTGCCGAA
GGTGCAACCCATAGTGGGATTGAGAAGCGACGTGGACTTTATTACAGCAA
ATGCGCTGGAAGTGATTAATGAGGGGGAGGATAGGGAGGAGATGGATTAT
CTACGGAAGGCGTGCTATGGAAAGGTGCCTGCTTACCTGCGACGGGTCCA
AGCAGAAATCCAGAGGGAGGATGCCTTATTAGACGCTCTCATTCAGAGGG
AGGAGGACGAAGAGAAGGAGGGAGAAGAAGGGGTAGTAATGGAAACGGTG
TCGGAGGGAAAACGTGTAGCCTTGGTGGTGGCATTGAAGGCAAAATGGGA
CGCAGTGAATGCGGCATATCAAAAGACGGCACATCAAGGGCAGTTTCAGA
GTGCGGGGGCGAGGCGAAGGAAGGAGCAGAACGAGAAGATCATGGACCAG
CTGGAGCAAGACATCGAGTTGTTGGAGCTGGCTGAAGGAGGGATGCTAGT
CGTGGAAAAAAATAAATAGATGCCTACCCAAACTATGCAGCCCACCGAAT
CCATCTACGCTCTACTTCCTAAGCCTGCGCCTATCCCACCCACCCGCACC
ATCTACCGCTCCCTCAAATTGCAAGCCGCCCGGAAGTTCCCACCACTCGC
GTCAACCTTTGGCTGCTTTGGTTCCAGCCACGTTTTGGGAGCCGGGAAAC
CGATCAAGAAAGCACACGCGCATCTCGGGCCACCCTTACGTACACAGGCG
GTGGCCCCCTGTCCGTTTTTGAGGGGAGGTGAGAAGAAACAGCGGGTCCC
GGGCAAGGTGCTTGTAAAGCCGTTTCGGTATTCAGATGCGGGCGTCCCAA
CCAAGGCAGGACTGCCGAAGGTGCAACCCATAGTGGGATTGAGAAGCGAC
GTGGACTTTATTACAGCAAATGCGCTGGAAGTGATTAATGAGGGGGAGGA
TAGGGAGGAGATGGATTATCTACGGAAGGCGTGCTATGGAAAGGTGCCTG
CTTACCTGCGACGGGTCCAAGCAGAAATCCAGAGGGAGGATGCCTTATTA
GACGCTCTCATTCAGAGGGAGGAGGACGAAGAGAAGGAGGGAGAAGAAGG
GGTAGTAATGGAAACGGTGTCGGAGGGAAAACGTGTAGCCTTGGTGGTGG
CATTGAAGGCAAAATGGGACGCAGTGAATGCGGCATATCAAAAGACGGCA
CATCAAGGGCAGTTTCAGAGTGCGGGGGCGAGGCGAAGGAAGGAGCAGAA
CGAGAAGATCATGGACCAGCTGGAGCAAGACATCGAGTTGTTGGAGCTGG
CTGAAGGAGGGATGCTAGTCGTGGAAAAAAATAAATAGATGCCTACCCAA
ACTATGCAGCCCACCGAATCCATCTACGCTCTACTTCCTAAGCCTGCGCC
TATCCCACCCACCCGCACCATCTACCGCTCCCTCAAATTGCAAGCCGCCC
GGAAGTTCCCACCACTCGCGTCAACCTTTGGCTGCTTTGGTTCCAGCCAC
GTTTTGGGAGCCGGGAAACCGATCAAGAAAGCACACGCGCATCTCGGGCC
ACCCTTACGTACACAGGCGGTGGCCCCCTGTCCGTTTTTGAGGGGAGGTG
AGAAGAAACAGCGGGTCCCGGGCAAGGTGCTTGTAAAGCCGTTTCGGTAT
TCAGATGCGGGCGTCCCAACCAAGGCAGGACTGCCGAAGGTGCAACCCAT
AGTGGGATTGAGAAGCGACGTGGACTTTATTACAGCAAATGCGCTGGAAG
TGATTAATGAGGGGGAGGATAGGGAGGAGATGGATTATCTACGGAAGGCG
TGCTATGGAAAGGTGCCTGCTTACCTGCGACGGGTCCAAGCAGAAATCCA
GAGGGAGGATGCCTTATTAGACGCTCTCATTCAGAGGGAGGAGGACGAAG
AGAAGGAGGGAGAAGAAGGGGTAGTAATGGAAACGGTGTCGGAGGGAAAA
CGTGTAGCCTTGGTGGTGGCATTGAAGGCAAAATGGGACGCAGTGAATGC
GGCATATCAAAAGACGGCACATCAAGGGCAGTTTCAGAGTGCGGGGGCGA
GGCGAAGGAAGGAGCAGAACGAGAAGATCATGGACCAGCTGGAGCAAGAC
ATCGAGTTGTTGGAGCTGGCTGAAGGAGGGATGCTAGTCGTGGAAAAAAA
TAAATAG

Synonyms

Publications