jgi.p|Nanoce1779_2|600498, mRNA_7911 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600498
Unique NamemRNA_7911
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length948
Alignment locationscaffold_22:151443..152390 +

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Properties
Property NameValue
TranscriptId600584
TrackFilteredModels2
ProteinId600498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:151443..152390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600498gene_7911Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600498mRNA_7911-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7911CDS_7911Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7911 ID=mRNA_7911|Name=jgi.p|Nanoce1779_2|600498|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
GCATTTAATGCAGCTGGTACAGAGATTCGACTTACCACACCTTGGCAGAG
AACATCGGATAAAATCGGAGGCTTTGATATTTTAGATAAGAACTTGTCGA
TGATTTATATTTTATAGGTTAGCCTTGTGTAGGGAGAGATATCTTGCACG
AAGCGTGCCTTGCTATAAGCCCCCATTCTTTCTATTCTTTCTTCTCCCCC
TCCCTTTGTTTTGGTCTGATTACTTCCTGTCGTCTTATACCACTACTGTC
ACATGCTTCTTCACTTGTTATGTTCGTTCTGTCATCATCGCACGCACGGT
GCTACTCATTGAAATGCTTTGTCACCCCTTCTCAATTTCCCACTTTCCCA
CTTATTATCACTTTGCTTCTCCAGTCCCTCCTTTCCACATACACCATCCC
ACCCATACCAATAAGCAGCATACGCCGCCCGTACATTTTTCAAATGCATG
TTGCCATTGCGGTGCCGGCCCTTCACTTCCCATTCCTCTTTTCTCTTTCT
CTATCTGTCGTCGCATGAGTTACTTGACACCTTCTCCGTTTCCTCAACCA
TAACCCTGCGCTCACTTCACTTGAGTAGCCGCCGCTTATCTCCTTTTCCT
CCCTCCACATCCCTCCTCCTCCTCTGTCCCTTCCTCCTTCCCTTTCTACT
GTTCCATCTCAGAAACTAAACCTGTCCAGTGCGTCCTGCGCGTCCGCCAA
ATCCTTCTGCACCTTCTTCCGTTTGTAAAAAATAGGGCAATCACGGTTCG
AGCACAAAATATCCTGGGATAGTGGAATGGAGGGTGGGAGGGAAGAGGTG
AGGTGGTTTTCACTAGCTAAGTTGTTTCGCACATTCTTCTTCTGACAAAG
TTTCCCTGGACCAGAAGCCCTGCAACTGGCAACCCCCCTTTTCCCTCCCT
CCCTCCCCCCCTCCTTCCCTACCTACCTGATGAAATGATCCCTGACAT
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protein sequence of jgi.p|Nanoce1779_2|600498

>mRNA_7911-protein ID=mRNA_7911-protein|Name=jgi.p|Nanoce1779_2|600498|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MFVLSSSHARCYSLKCFVTPSQFPTFPLIITLLLQSLLSTYTIPPIPISS
IRRPYIFQMHVAIAVPALHFPFLFSLSLSVVA*
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mRNA from alignment at scaffold_22:151443..152390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7911 ID=mRNA_7911|Name=jgi.p|Nanoce1779_2|600498|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at scaffold_22:151443..152390+ (Nannochloropsis oceanica)
GCATTTAATGCAGCTGGTACAGAGATTCGACTTACCACACCTTGGCAGAG
AACATCGGATAAAATCGGAGGCTTTGATATTTTAGATAAGAACTTGTCGA
TGATTTATATTTTATAGGTTAGCCTTGTGTAGGGAGAGATATCTTGCACG
AAGCGTGCCTTGCTATAAGCCCCCATTCTTTCTATTCTTTCTTCTCCCCC
TCCCTTTGTTTTGGTCTGATTACTTCCTGTCGTCTTATACCACTACTGTC
ACATGCTTCTTCACTTGTTATGTTCGTTCTGTCATCATCGCACGCACGGT
GCTACTCATTGAAATGCTTTGTCACCCCTTCTCAATTTCCCACTTTCCCA
CTTATTATCACTTTGCTTCTCCAGTCCCTCCTTTCCACATACACCATCCC
ACCCATACCAATAAGCAGCATACGCCGCCCGTACATTTTTCAAATGCATG
TTGCCATTGCGGTGCCGGCCCTTCACTTCCCATTCCTCTTTTCTCTTTCT
CTATCTGTCGTCGCATGAGTTACTTGACACCTTCTCCGTTTCCTCAACCA
TAACCCTGCGCTCACTTCACTTGAGTAGCCGCCGCTTATCTCCTTTTCCT
CCCTCCACATCCCTCCTCCTCCTCTGTCCCTTCCTCCTTCCCTTTCTACT
GTTCCATCTCAGAAACTAAACCTGTCCAGTGCGTCCTGCGCGTCCGCCAA
ATCCTTCTGCACCTTCTTCCGTTTGTAAAAAATAGGGCAATCACGGTTCG
AGCACAAAATATCCTGGGATAGTGGAATGGAGGGTGGGAGGGAAGAGGTG
AGGTGGTTTTCACTAGCTAAGTTGTTTCGCACATTCTTCTTCTGACAAAG
TTTCCCTGGACCAGAAGCCCTGCAACTGGCAACCCCCCTTTTCCCTCCCT
CCCTCCCCCCCTCCTTCCCTACCTACCTGATGAAATGATCCCTGACAT
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Coding sequence (CDS) from alignment at scaffold_22:151443..152390+

>mRNA_7911 ID=mRNA_7911|Name=jgi.p|Nanoce1779_2|600498|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_22:151443..152390+ (Nannochloropsis oceanica)
ATGTTCGTTCTGTCATCATCGCACGCACGGTGCTACTCATTGAAATGCTT
TGTCACCCCTTCTCAATTTCCCACTTTCCCACTTATTATCACTTTGCTTC
TCCAGTCCCTCCTTTCCACATACACCATCCCACCCATACCAATAAGCAGC
ATACGCCGCCCGTACATTTTTCAAATGCATGTTGCCATTGCGGTGCCGGC
CCTTCACTTCCCATTCCTCTTTTCTCTTTCTCTATCTGTCGTCGCATGA
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Synonyms
Publications