jgi.p|Nanoce1779_2|176221, mRNA_7910 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|176221
Unique Name	mRNA_7910
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2764
Alignment location	scaffold_22:148583..151346 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	176307
Track	FilteredModels2
ProteinId	176221

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:148583..151346 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|176221	gene_7910	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|176221	mRNA_7910-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7910	CDS_7910	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:148583..151346-
coding sequence from alignment at scaffold_22:148583..151346-

mRNA sequence

>mRNA_7910 ID=mRNA_7910|Name=jgi.p|Nanoce1779_2|176221|organism=Nannochloropsis oceanica|type=mRNA|length=2764bp
CATAATATGCCTGCGCCAGGGGCATTCAGCTTGCTAACTCTCAAATCGTC
CTTTCTAATGCCGCGCATTCTATCTTCATTACATGACTATACACAGGGAA
GGGAGTCATGGGGCCTGCTGGGCGACGAGCGCCCGCCTCCTCTCCGATGC
TTCTTCTTGCCTTACCACTTTTCCTTCTGCTCCTCACCCACGTCACGACC
TCGACCCACGCATTTGAGCTTTCCTGCGCTCACGCGAGAATACCTGTACC
CGAGGCCTTGACATTCTGCGGGGATATTGTCACATGGCGGGCCGCCATTG
TGTATTCCCATGTTAATCACACCGATTTTCACCCAGGGATTAAATTCACG
GATGCGGACCAAGACCGCATTGCGCGACTGCAGTACGAAGACTTAATGCT
TGCAGCAGCAGGTGTGGCAGATGAAAGAGATACCACAAGAGTAGGCATAG
ATGGTTGCAATGAGAAAGAGAGGAGTTGCTCGGACATCGTGGACGTGAAG
GGTGGAGAGGTGGAGGGCCAAAGAACACAGGAGCTGGAACAGGCGTGCTT
GTCTTCGCCATCATCCTCCTTGCCCACTGCTGCAACAACACACGGCAGTG
AAGGAAAGTGTGGCTATGCTCTGAAACGCTTTGTCTGTGCAAGCGTCTTC
TCTGAATGTCCCCACGAGGGAATACGCATGCCCCATGTCCCTGTCTGCCG
CCCCGTGTGCCGCGACGCCGAAGCCCAATGCCTCCTCCCTCTCTCCTGCG
AATCCTTTCGATCCACCGACTGTACTGCCGCGCTTGAGGAGGGATTTTTT
CTCCTTAAAGATGACCAAGGCCCTCATGAACCCCTTCCCTACCTTTACGT
CTCCCTACTCCTCATATGGACGGGTCTTTCCTTTATCTGGCTCCACCACA
CCTGCAGGCGAAGCAACCTCCATCCACACCGCCATGGCCGGGGCTCGGGC
CCCTCCTCCCTGGCTGCCTCACAACTCTGCCGCGTCCTCAGTTGTGTGCC
GATCACCAAGGTATCAATGATGTTGTTGTCATTGACCTTCTGGTCTACGT
GTGTGACATGGGGCTACTGCTCCTTCTGGCTTGGCATCTCCTTGATCAAC
TGCCAGCTGCTCTACGAGACCTTCGCCCTCGCCGGTCTTGCTTTGGTGGC
GAAAGGATGGTGCATTACTCGCTCCTCTTTCCAGCCCCACGAATGGCGCA
CTCTCATACTGTTAATTTGTGCCTTCTACCTCGCCTCCTCCTCCCTCCTC
CTTGTACGGCGGCTGCTCCTCTCCCCCCTTATCTTCTGGCTATGCACTGC
CCTCCTCTACGGCTCAGCATATTCCTACGTCATTTACAATGTCTATCAAC
GCCTTTCGTACCTGCATCACCAAATCACCTTCGCTGCCGCCGCTGCTGCT
CCTCCCCCCCTCCCTCCCTCCCTCCAGCATCGCCGGCAGCGGCATCAGCA
TCGGCTACAGCGGCAACAGCACCGACGACGACTCGAAATTTTGGAGCTCA
AGCACTGGATGTACCAAACCCTGGCTAACCTTTTCACCCTCTTTGGTGCT
ATCGAGTGTTTTTTCTGCTGCCTTCCACTCTTGCCGTCTCTCAGTGCAGG
CCTGCCCCCCCTCCCTTCCTTCCTTTACTCTGTCCTGGATGTCCTTGAGG
AGCTTGATGCGAAATTATGGCTCACATTAGTAGTGCATGAGGCAGTAGAA
ATAGTGACATTGTTTATGATTGGGTTTCTGTTTCGTCCTCGCTTGGTGTC
GGCGTTCTGGTACCTTGACAGGGATGAGAGGAGGGTTGGCCTGGAGGGGG
AGGGAGGGAGGAAGGGAAGAGGAAGGACGGAAGGGAGGCCTCTGTATTTG
ATTCCGGTGGGTACGAGGGAGTACGAGAGAGAGAGGGAGGGAGATGTGAC
AGACAAAGGCTGCTCTTTGCTACATTCCCCCCTTCTTTCTATTGCTGCTG
ATGCTACTGCTGCTGCTGCTGCTGCTGCTCCAGGAGTAACGTACCACCCT
CACCTCATTCCCCGTCAGCATTTGGCGGCTCAAGACTTTCAATTTATCGT
TTCGTCTGACAGTCTTCGCTCGGTTCATCCAAGACCGCGGCAGCAGCGGC
AACAGCAGCAACAGCAGCAACAGCAGCAACGGGAGCAGGGGCAGCAGCAT
CAACAACTTCAACAGCAAAGAGAAAGGACTCTCTCTTCTTCCTCTTCCTC
CACCTCCTCCCTCTCTCTCTCTCTCTCTTCCTCTCTTTCCTCCTTCTCCT
CCTCCGCCTCTGTGAACACAAACATCATAACAGCAGCCACGGGGGCGGGT
CAAGTATCAAGAGAGGAAGAGCAACGGCAGCATCAAGGAGAGCAAGGGAG
GGAGGATGACGTACCAGCATCAGCATCAACATTAATAGTATCAACAGCAG
AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGA
TCAGCAGCAGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCTT
GACCATGTCTGAGGATCCGGCGGTGGCTCCTGTGAAGGCGGCGATAAGAT
ACCACTCTTCCAGATTTCTCGTAGTGCGACAGCCTGGCCATCAAATTCAC
GTTGCCGTCAGGGAAGAGGAGGAAAAGGAGGAGGAACTGCAGCAGGAGGA
GGAACGGGAGGAGGGGGGAGTGGGTGGGGAGGTGGGGTAATGATTTAAGA
AATGTTTTTCATCTAAAGATTAGGAATTACGTTTCTCGATTTTGAGTCGT
GTGACTGCATAGAG

protein sequence of jgi.p|Nanoce1779_2|176221

>mRNA_7910-protein ID=mRNA_7910-protein|Name=jgi.p|Nanoce1779_2|176221|organism=Nannochloropsis oceanica|type=polypeptide|length=861bp
MGPAGRRAPASSPMLLLALPLFLLLLTHVTTSTHAFELSCAHARIPVPEA
LTFCGDIVTWRAAIVYSHVNHTDFHPGIKFTDADQDRIARLQYEDLMLAA
AGVADERDTTRVGIDGCNEKERSCSDIVDVKGGEVEGQRTQELEQACLSS
PSSSLPTAATTHGSEGKCGYALKRFVCASVFSECPHEGIRMPHVPVCRPV
CRDAEAQCLLPLSCESFRSTDCTAALEEGFFLLKDDQGPHEPLPYLYVSL
LLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPIT
KVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKG
WCITRSSFQPHEWRTLILLICAFYLASSSLLLVRRLLLSPLIFWLCTALL
YGSAYSYVIYNVYQRLSYLHHQITFAAAAAAPPPLPPSLQHRRQRHQHRL
QRQQHRRRLEILELKHWMYQTLANLFTLFGAIECFFCCLPLLPSLSAGLP
PLPSFLYSVLDVLEELDAKLWLTLVVHEAVEIVTLFMIGFLFRPRLVSAF
WYLDRDERRVGLEGEGGRKGRGRTEGRPLYLIPVGTREYEREREGDVTDK
GCSLLHSPLLSIAADATAAAAAAAPGVTYHPHLIPRQHLAAQDFQFIVSS
DSLRSVHPRPRQQRQQQQQQQQQQREQGQQHQQLQQQRERTLSSSSSSTS
SLSLSLSSSLSSFSSSASVNTNIITAATGAGQVSREEEQRQHQGEQGRED
DVPASASTLIVSTAEAAAAAAAAAAAAAEAGSAAGSAAAAAAAAAAALTM
SEDPAVAPVKAAIRYHSSRFLVVRQPGHQIHVAVREEEEKEEELQQEEER
EEGGVGGEVG*

mRNA from alignment at scaffold_22:148583..151346-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7910 ID=mRNA_7910|Name=jgi.p|Nanoce1779_2|176221|organism=Nannochloropsis oceanica|type=mRNA|length=2764bp|location=Sequence derived from alignment at scaffold_22:148583..151346- (Nannochloropsis oceanica)
CATAATATGCCTGCGCCAGGGGCATTCAGCTTGCTAACTCTCAAATCGTC
CTTTCTAATGCCGCGCATTCTATCTTCATTACATGACTATACACAGGGAA
GGGAGTCATGGGGCCTGCTGGGCGACGAGCGCCCGCCTCCTCTCCGATGC
TTCTTCTTGCCTTACCACTTTTCCTTCTGCTCCTCACCCACGTCACGACC
TCGACCCACGCATTTGAGCTTTCCTGCGCTCACGCGAGAATACCTGTACC
CGAGGCCTTGACATTCTGCGGGGATATTGTCACATGGCGGGCCGCCATTG
TGTATTCCCATGTTAATCACACCGATTTTCACCCAGGGATTAAATTCACG
GATGCGGACCAAGACCGCATTGCGCGACTGCAGTACGAAGACTTAATGCT
TGCAGCAGCAGGTGTGGCAGATGAAAGAGATACCACAAGAGTAGGCATAG
ATGGTTGCAATGAGAAAGAGAGGAGTTGCTCGGACATCGTGGACGTGAAG
GGTGGAGAGGTGGAGGGCCAAAGAACACAGGAGCTGGAACAGGCGTGCTT
GTCTTCGCCATCATCCTCCTTGCCCACTGCTGCAACAACACACGGCAGTG
AAGGAAAGTGTGGCTATGCTCTGAAACGCTTTGTCTGTGCAAGCGTCTTC
TCTGAATGTCCCCACGAGGGAATACGCATGCCCCATGTCCCTGTCTGCCG
CCCCGTGTGCCGCGACGCCGAAGCCCAATGCCTCCTCCCTCTCTCCTGCG
AATCCTTTCGATCCACCGACTGTACTGCCGCGCTTGAGGAGGGATTTTTT
CTCCTTAAAGATGACCAAGGCCCTCATGAACCCCTTCCCTACCTTTACGT
CTCCCTACTCCTCATATGGACGGGTCTTTCCTTTATCTGGCTCCACCACA
CCTGCAGGCGAAGCAACCTCCATCCACACCGCCATGGCCGGGGCTCGGGC
CCCTCCTCCCTGGCTGCCTCACAACTCTGCCGCGTCCTCAGTTGTGTGCC
GATCACCAAGGTATCAATGATGTTGTTGTCATTGACCTTCTGGTCTACGT
GTGTGACATGGGGCTACTGCTCCTTCTGGCTTGGCATCTCCTTGATCAAC
TGCCAGCTGCTCTACGAGACCTTCGCCCTCGCCGGTCTTGCTTTGGTGGC
GAAAGGATGGTGCATTACTCGCTCCTCTTTCCAGCCCCACGAATGGCGCA
CTCTCATACTGTTAATTTGTGCCTTCTACCTCGCCTCCTCCTCCCTCCTC
CTTGTACGGCGGCTGCTCCTCTCCCCCCTTATCTTCTGGCTATGCACTGC
CCTCCTCTACGGCTCAGCATATTCCTACGTCATTTACAATGTCTATCAAC
GCCTTTCGTACCTGCATCACCAAATCACCTTCGCTGCCGCCGCTGCTGCT
CCTCCCCCCCTCCCTCCCTCCCTCCAGCATCGCCGGCAGCGGCATCAGCA
TCGGCTACAGCGGCAACAGCACCGACGACGACTCGAAATTTTGGAGCTCA
AGCACTGGATGTACCAAACCCTGGCTAACCTTTTCACCCTCTTTGGTGCT
ATCGAGTGTTTTTTCTGCTGCCTTCCACTCTTGCCGTCTCTCAGTGCAGG
CCTGCCCCCCCTCCCTTCCTTCCTTTACTCTGTCCTGGATGTCCTTGAGG
AGCTTGATGCGAAATTATGGCTCACATTAGTAGTGCATGAGGCAGTAGAA
ATAGTGACATTGTTTATGATTGGGTTTCTGTTTCGTCCTCGCTTGGTGTC
GGCGTTCTGGTACCTTGACAGGGATGAGAGGAGGGTTGGCCTGGAGGGGG
AGGGAGGGAGGAAGGGAAGAGGAAGGACGGAAGGGAGGCCTCTGTATTTG
ATTCCGGTGGGTACGAGGGAGTACGAGAGAGAGAGGGAGGGAGATGTGAC
AGACAAAGGCTGCTCTTTGCTACATTCCCCCCTTCTTTCTATTGCTGCTG
ATGCTACTGCTGCTGCTGCTGCTGCTGCTCCAGGAGTAACGTACCACCCT
CACCTCATTCCCCGTCAGCATTTGGCGGCTCAAGACTTTCAATTTATCGT
TTCGTCTGACAGTCTTCGCTCGGTTCATCCAAGACCGCGGCAGCAGCGGC
AACAGCAGCAACAGCAGCAACAGCAGCAACGGGAGCAGGGGCAGCAGCAT
CAACAACTTCAACAGCAAAGAGAAAGGACTCTCTCTTCTTCCTCTTCCTC
CACCTCCTCCCTCTCTCTCTCTCTCTCTTCCTCTCTTTCCTCCTTCTCCT
CCTCCGCCTCTGTGAACACAAACATCATAACAGCAGCCACGGGGGCGGGT
CAAGTATCAAGAGAGGAAGAGCAACGGCAGCATCAAGGAGAGCAAGGGAG
GGAGGATGACGTACCAGCATCAGCATCAACATTAATAGTATCAACAGCAG
AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGA
TCAGCAGCAGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCTT
GACCATGTCTGAGGATCCGGCGGTGGCTCCTGTGAAGGCGGCGATAAGAT
ACCACTCTTCCAGATTTCTCGTAGTGCGACAGCCTGGCCATCAAATTCAC
GTTGCCGTCAGGGAAGAGGAGGAAAAGGAGGAGGAACTGCAGCAGGAGGA
GGAACGGGAGGAGGGGGGAGTGGGTGGGGAGGTGGGGTAATGATTTAAGA
AATGTTTTTCATCTAAAGATTAGGAATTACGTTTCTCGATTTTGAGTCGT
GTGACTGCATAGAG

Coding sequence (CDS) from alignment at scaffold_22:148583..151346-

>mRNA_7910 ID=mRNA_7910|Name=jgi.p|Nanoce1779_2|176221|organism=Nannochloropsis oceanica|type=CDS|length=2583bp|location=Sequence derived from alignment at scaffold_22:148583..151346- (Nannochloropsis oceanica)
ATGGGGCCTGCTGGGCGACGAGCGCCCGCCTCCTCTCCGATGCTTCTTCT
TGCCTTACCACTTTTCCTTCTGCTCCTCACCCACGTCACGACCTCGACCC
ACGCATTTGAGCTTTCCTGCGCTCACGCGAGAATACCTGTACCCGAGGCC
TTGACATTCTGCGGGGATATTGTCACATGGCGGGCCGCCATTGTGTATTC
CCATGTTAATCACACCGATTTTCACCCAGGGATTAAATTCACGGATGCGG
ACCAAGACCGCATTGCGCGACTGCAGTACGAAGACTTAATGCTTGCAGCA
GCAGGTGTGGCAGATGAAAGAGATACCACAAGAGTAGGCATAGATGGTTG
CAATGAGAAAGAGAGGAGTTGCTCGGACATCGTGGACGTGAAGGGTGGAG
AGGTGGAGGGCCAAAGAACACAGGAGCTGGAACAGGCGTGCTTGTCTTCG
CCATCATCCTCCTTGCCCACTGCTGCAACAACACACGGCAGTGAAGGAAA
GTGTGGCTATGCTCTGAAACGCTTTGTCTGTGCAAGCGTCTTCTCTGAAT
GTCCCCACGAGGGAATACGCATGCCCCATGTCCCTGTCTGCCGCCCCGTG
TGCCGCGACGCCGAAGCCCAATGCCTCCTCCCTCTCTCCTGCGAATCCTT
TCGATCCACCGACTGTACTGCCGCGCTTGAGGAGGGATTTTTTCTCCTTA
AAGATGACCAAGGCCCTCATGAACCCCTTCCCTACCTTTACGTCTCCCTA
CTCCTCATATGGACGGGTCTTTCCTTTATCTGGCTCCACCACACCTGCAG
GCGAAGCAACCTCCATCCACACCGCCATGGCCGGGGCTCGGGCCCCTCCT
CCCTGGCTGCCTCACAACTCTGCCGCGTCCTCAGTTGTGTGCCGATCACC
AAGGTATCAATGATGTTGTTGTCATTGACCTTCTGGTCTACGTGTGTGAC
ATGGGGCTACTGCTCCTTCTGGCTTGGCATCTCCTTGATCAACTGCCAGC
TGCTCTACGAGACCTTCGCCCTCGCCGGTCTTGCTTTGGTGGCGAAAGGA
TGGTGCATTACTCGCTCCTCTTTCCAGCCCCACGAATGGCGCACTCTCAT
ACTGTTAATTTGTGCCTTCTACCTCGCCTCCTCCTCCCTCCTCCTTGTAC
GGCGGCTGCTCCTCTCCCCCCTTATCTTCTGGCTATGCACTGCCCTCCTC
TACGGCTCAGCATATTCCTACGTCATTTACAATGTCTATCAACGCCTTTC
GTACCTGCATCACCAAATCACCTTCGCTGCCGCCGCTGCTGCTCCTCCCC
CCCTCCCTCCCTCCCTCCAGCATCGCCGGCAGCGGCATCAGCATCGGCTA
CAGCGGCAACAGCACCGACGACGACTCGAAATTTTGGAGCTCAAGCACTG
GATGTACCAAACCCTGGCTAACCTTTTCACCCTCTTTGGTGCTATCGAGT
GTTTTTTCTGCTGCCTTCCACTCTTGCCGTCTCTCAGTGCAGGCCTGCCC
CCCCTCCCTTCCTTCCTTTACTCTGTCCTGGATGTCCTTGAGGAGCTTGA
TGCGAAATTATGGCTCACATTAGTAGTGCATGAGGCAGTAGAAATAGTGA
CATTGTTTATGATTGGGTTTCTGTTTCGTCCTCGCTTGGTGTCGGCGTTC
TGGTACCTTGACAGGGATGAGAGGAGGGTTGGCCTGGAGGGGGAGGGAGG
GAGGAAGGGAAGAGGAAGGACGGAAGGGAGGCCTCTGTATTTGATTCCGG
TGGGTACGAGGGAGTACGAGAGAGAGAGGGAGGGAGATGTGACAGACAAA
GGCTGCTCTTTGCTACATTCCCCCCTTCTTTCTATTGCTGCTGATGCTAC
TGCTGCTGCTGCTGCTGCTGCTCCAGGAGTAACGTACCACCCTCACCTCA
TTCCCCGTCAGCATTTGGCGGCTCAAGACTTTCAATTTATCGTTTCGTCT
GACAGTCTTCGCTCGGTTCATCCAAGACCGCGGCAGCAGCGGCAACAGCA
GCAACAGCAGCAACAGCAGCAACGGGAGCAGGGGCAGCAGCATCAACAAC
TTCAACAGCAAAGAGAAAGGACTCTCTCTTCTTCCTCTTCCTCCACCTCC
TCCCTCTCTCTCTCTCTCTCTTCCTCTCTTTCCTCCTTCTCCTCCTCCGC
CTCTGTGAACACAAACATCATAACAGCAGCCACGGGGGCGGGTCAAGTAT
CAAGAGAGGAAGAGCAACGGCAGCATCAAGGAGAGCAAGGGAGGGAGGAT
GACGTACCAGCATCAGCATCAACATTAATAGTATCAACAGCAGAAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGATCAGCAG
CAGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCTTGACCATG
TCTGAGGATCCGGCGGTGGCTCCTGTGAAGGCGGCGATAAGATACCACTC
TTCCAGATTTCTCGTAGTGCGACAGCCTGGCCATCAAATTCACGTTGCCG
TCAGGGAAGAGGAGGAAAAGGAGGAGGAACTGCAGCAGGAGGAGGAACGG
GAGGAGGGGGGAGTGGGTGGGGAGGTGGGGTAA

Synonyms

Publications