jgi.p|Nanoce1779_2|141961, mRNA_791 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|141961
Unique NamemRNA_791
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length877
Alignment locationscaffold_2:443321..444197 -

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Properties
Property NameValue
TranscriptId142047
TrackFilteredModels2
ProteinId141961
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:443321..444197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|141961gene_791Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|141961mRNA_791-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_791CDS_791Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_791 ID=mRNA_791|Name=jgi.p|Nanoce1779_2|141961|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
CTGAGCGGAAGCAGGGTGAAGAGATTCGCAGCATTATCATCACCCCATTC
CATCGGGACCAAACCACAACAGGAATTGTCGTAACCGAACCAAAATGAGG
ACCCCGCATCACTACGAGGTCGAATGCGAATTAAGAATGAAGACAAACAG
TCGAGGCAGCAGCAGCGGCCAGAGCATGAAGAGACGGCGGCAAGGAGTAG
CATTGTTGTCCCTACTCCTGGGTGGCTGTTGCATTTTGCCTCCTGGCACT
GGTGAGTCTGATAGTCTCTTGGGGCTGCATGAGGGAATAAGGGGCATTGG
GAAGCCGGGACGCTTTGTCTTAAATGCTCATGGCTCGAAATCATTCTTGT
CTTGTGCTGTTTGGATGTGCTCCTGGAGGCTTCGTCCTCCCCTGATGTCA
TCGTCTTTCCTCCCTTTTTGGCATATAACACACACAAACAACGCCCGTTC
TCACCACCCCATCACGTCGCATATTCTCATCATATCCACTCACTCTGTGT
CTCTCCCTCTTCATCACAATTCGCAGGCGCTACCTCCGTATCACCCTCCA
GTCGTGGCTATTTCAGCGGCAGCACCTCAAGCCCCCTCAATGCTGGGAAC
AATCGCAAAAACGATGGTCGCGGTAATGGGCGGGGGGGCGCAACGGGCAG
TAATGCAAACGGCGGGCCCTCCTTCTCCTCTCCGTCATCGCCCTCTTCTA
CCTCCTCCGCTTCGTCGCGTCAACCGCAGGGAGGAGTAGGGAAAGGCCGA
AGTGGAGGGCCATATGGTGTAGGTAGTGATGGCAGCAACAATGCCGCAAG
TAGGAAAGGAGGAAGCGGAGGAGGAGGAGGACCTAAGAAGCCTCTCGCTC
AACCAAAGTACCGGACGCTGCAACGCT
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protein sequence of jgi.p|Nanoce1779_2|141961

>mRNA_791-protein ID=mRNA_791-protein|Name=jgi.p|Nanoce1779_2|141961|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MRTPHHYEVECELRMKTNSRGSSSGQSMKRRRQGVALLSLLLGGCCILPP
GTGESDSLLGLHEGIRGIGKPGRFVLNAHGSKSFLSCAVWMCSWRLRPPL
MSSSFLPFWHITHTNNARSHHPITSHILIISTHSVSLPLHHNSQALPPYH
PPVVAISAAAPQAPSMLGTIAKTMVAVMGGGAQRAVMQTAGPPSPLRHRP
LLPPPLRRVNRREE*
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mRNA from alignment at scaffold_2:443321..444197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_791 ID=mRNA_791|Name=jgi.p|Nanoce1779_2|141961|organism=Nannochloropsis oceanica|type=mRNA|length=877bp|location=Sequence derived from alignment at scaffold_2:443321..444197- (Nannochloropsis oceanica)
CTGAGCGGAAGCAGGGTGAAGAGATTCGCAGCATTATCATCACCCCATTC
CATCGGGACCAAACCACAACAGGAATTGTCGTAACCGAACCAAAATGAGG
ACCCCGCATCACTACGAGGTCGAATGCGAATTAAGAATGAAGACAAACAG
TCGAGGCAGCAGCAGCGGCCAGAGCATGAAGAGACGGCGGCAAGGAGTAG
CATTGTTGTCCCTACTCCTGGGTGGCTGTTGCATTTTGCCTCCTGGCACT
GGTGAGTCTGATAGTCTCTTGGGGCTGCATGAGGGAATAAGGGGCATTGG
GAAGCCGGGACGCTTTGTCTTAAATGCTCATGGCTCGAAATCATTCTTGT
CTTGTGCTGTTTGGATGTGCTCCTGGAGGCTTCGTCCTCCCCTGATGTCA
TCGTCTTTCCTCCCTTTTTGGCATATAACACACACAAACAACGCCCGTTC
TCACCACCCCATCACGTCGCATATTCTCATCATATCCACTCACTCTGTGT
CTCTCCCTCTTCATCACAATTCGCAGGCGCTACCTCCGTATCACCCTCCA
GTCGTGGCTATTTCAGCGGCAGCACCTCAAGCCCCCTCAATGCTGGGAAC
AATCGCAAAAACGATGGTCGCGGTAATGGGCGGGGGGGCGCAACGGGCAG
TAATGCAAACGGCGGGCCCTCCTTCTCCTCTCCGTCATCGCCCTCTTCTA
CCTCCTCCGCTTCGTCGCGTCAACCGCAGGGAGGAGTAGGGAAAGGCCGA
AGTGGAGGGCCATATGGTGTAGGTAGTGATGGCAGCAACAATGCCGCAAG
TAGGAAAGGAGGAAGCGGAGGAGGAGGAGGACCTAAGAAGCCTCTCGCTC
AACCAAAGTACCGGACGCTGCAACGCT
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Coding sequence (CDS) from alignment at scaffold_2:443321..444197-

>mRNA_791 ID=mRNA_791|Name=jgi.p|Nanoce1779_2|141961|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_2:443321..444197- (Nannochloropsis oceanica)
ATGAGGACCCCGCATCACTACGAGGTCGAATGCGAATTAAGAATGAAGAC
AAACAGTCGAGGCAGCAGCAGCGGCCAGAGCATGAAGAGACGGCGGCAAG
GAGTAGCATTGTTGTCCCTACTCCTGGGTGGCTGTTGCATTTTGCCTCCT
GGCACTGGTGAGTCTGATAGTCTCTTGGGGCTGCATGAGGGAATAAGGGG
CATTGGGAAGCCGGGACGCTTTGTCTTAAATGCTCATGGCTCGAAATCAT
TCTTGTCTTGTGCTGTTTGGATGTGCTCCTGGAGGCTTCGTCCTCCCCTG
ATGTCATCGTCTTTCCTCCCTTTTTGGCATATAACACACACAAACAACGC
CCGTTCTCACCACCCCATCACGTCGCATATTCTCATCATATCCACTCACT
CTGTGTCTCTCCCTCTTCATCACAATTCGCAGGCGCTACCTCCGTATCAC
CCTCCAGTCGTGGCTATTTCAGCGGCAGCACCTCAAGCCCCCTCAATGCT
GGGAACAATCGCAAAAACGATGGTCGCGGTAATGGGCGGGGGGGCGCAAC
GGGCAGTAATGCAAACGGCGGGCCCTCCTTCTCCTCTCCGTCATCGCCCT
CTTCTACCTCCTCCGCTTCGTCGCGTCAACCGCAGGGAGGAGTAG
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Synonyms
Publications