jgi.p|Nanoce1779_2|600493, mRNA_7909 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600493
Unique Name	mRNA_7909
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1823
Alignment location	scaffold_22:146671..148720 +

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Properties


Property Name	Value
TranscriptId	600579
Track	FilteredModels2
ProteinId	600493

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:146671..148720 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600493	gene_7909	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600493	mRNA_7909-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7909	CDS_7909	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:146671..148720+
coding sequence from alignment at scaffold_22:146671..148720+

mRNA sequence

>mRNA_7909 ID=mRNA_7909|Name=jgi.p|Nanoce1779_2|600493|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp
ACATCAGCAGGAACGCAAGAAGAATGAAAGGCGCTCTCTTCATCTTCGCC
CTCTGGGGCGTCCTCTTTGCCTTGGTACCGATTGTGGTGGATTATGCCAC
GCGGAAAGAATTTATTGTGCACAGCTCAGGTGCAATTATTGTCACTGGGG
CCTCAACTGGCATCGGGAACCACGCCGCCATCCACCTCGCCACCCAGCAC
CCCCTCACCACTATCTATGCCGGAATCCGCAAGGACAAAGACGCCGAAGC
CATTGCCGCCTTAAACATGCCCAACCTTCTCCCCCTCAAGCTTGACACGA
CAGACCAAGCCTCCATGGACGCAGCCGTCGCCCAGGTCCTTACCACCGGG
ATCCCAGTAATCGGCCTGGTCAACAATGCTGGCGTCAGCAACAACTCCCC
CCTTGAGTTTTTGCCCATGCCCAAACTACGACAACTGCTGGAAACCAACG
TGGTAGGGCCCACGTACCTTACGCAGAAGCTTACTCCTGCCCTCCGTGCA
TCCCAGGGACGTGTCGTGCAGATTTCCTCCGTGCTGGGTAAAGTCACCTT
GGCGACCCGTGGTGCTTACAGTGCTAGTAAACACGCCTTTGAAGCCTTGA
GCGATGTCTTTCGATTGGAGCTTGCTAATTTTGGAGTTTCTGTTTCAATT
GTAGAGCCCGCATACGTCAAGACGGAGATTTTTGGAAAGGTACAACAAGA
TATCGATGGGATGAAATCAGCCGAGCTGTTGGAGTTATACGGCCCCCTTT
ATTATCGAGCAGACCAAGCGAAGAAGAAACAAAAACAGATCGAGGGGGGG
GATAGCCCGATGGTGACATCGGAGGCCATCGAGCATGCGATGTTCCACCG
CTTCCCCAAGACCCGATATGTGGTGGCAAATTTCGCAGGCATACCGGCGG
ACGTGTGTTTGTATTTGAATTGGTTAATGCCCGATCGGCTGCTCGATTTG
GTCAAAAGCAAGATGTGAGTGGGAGAGCAGGAAGAGGGAGGGGAGCGAGA
GGGAGAAAGGAGGGGTAGAAGAAAGAAGCTTTAAAGTAATAGAAAATCCC
ACTTATCCACTTGCATCCTGTCGTAGACCCGGTTTCAAATCTCTCTTCCT
TATAATCTCCGCAGACAGGCCTGTATCCTTATCCTCTTATATATACTCAG
GAACCATGGAGAGAGGGAGGAAGCCCGATCAATTCGAACTACTTTCACCA
CAATGTCCATTTATCTGTGTGCTATATATTCGCGTGTTACACTTGCTATG
ACCAACACCACTCTGTCGCAATTGCTACTGCTGCTGCTGTGCTACTGCTG
CTGCTGCTACTGATCACATTTACATTTGCGCGCTGCGTCCTCTGGTTAAT
GACACATGGTCAAATTAGGCAAGCAATAACAGCAACAGTAGAAGGAGCAG
CAGCCAGCCGTCAATGAAGAAGAAACGGCGGATGAGAACGAATGCTATCA
CTCACCTTCTTCTTACAGAGGTGTGGTGCGCACAGTCTTTACTTTACCGT
AAGTCCTTTCTTCCCATCTCTCTCTTCCTCCCCTTTAATTCTTCATGTCC
TTACTCTTTAGCTCTTGAGAAACTATGTTTACTCCAAAAGCATATCTCTA
TGGGTCCTTGACATTCCTACTTTCTCATCCCCTGTCCTCCTCTCTCTCCT
CCTTCCCTTCCTTATATCCGCCCCAGACATCTCCCCTCTATGCAGTCACA
CGACTCAAAATCGAGAAACGTAATTCCTAATCTTTAGATGAAAAACATTT
CTTAAATCATTACCCCACCTCCCCACCCACTCCCCCCTCCTCCCGTTCCT
CCTCCTGCTGCAGTTCCTCCTCC

protein sequence of jgi.p|Nanoce1779_2|600493

>mRNA_7909-protein ID=mRNA_7909-protein|Name=jgi.p|Nanoce1779_2|600493|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MKGALFIFALWGVLFALVPIVVDYATRKEFIVHSSGAIIVTGASTGIGNH
AAIHLATQHPLTTIYAGIRKDKDAEAIAALNMPNLLPLKLDTTDQASMDA
AVAQVLTTGIPVIGLVNNAGVSNNSPLEFLPMPKLRQLLETNVVGPTYLT
QKLTPALRASQGRVVQISSVLGKVTLATRGAYSASKHAFEALSDVFRLEL
ANFGVSVSIVEPAYVKTEIFGKVQQDIDGMKSAELLELYGPLYYRADQAK
KKQKQIEGGDSPMVTSEAIEHAMFHRFPKTRYVVANFAGIPADVCLYLNW
LMPDRLLDLVKSKM*

mRNA from alignment at scaffold_22:146671..148720+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7909 ID=mRNA_7909|Name=jgi.p|Nanoce1779_2|600493|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp|location=Sequence derived from alignment at scaffold_22:146671..148720+ (Nannochloropsis oceanica)
ACATCAGCAGGAACGCAAGAAGAATGAAAGGCGCTCTCTTCATCTTCGCC
CTCTGGGGCGTCCTCTTTGCCTTGGTACCGATTGTGGTGGATTATGCCAC
GCGGAAAGAATTTATTGTGCACAGCTCAGGTGCAATTATTGTCACTGGTA
CGTTTATAATAATGGGGCTGACATGGAGACGGAGAAAAGAGCGCGAGGCA
TTCTTGACAAGCCGTTCCATTCGCCCCTCCTTTGTCCTGGCTGCAACAAA
CCACTCCCGCTTGCCTTTGTTAGAAGAAATAGGAAAGATGAACGGCGCGA
ATGCCCTTGATAGTCTCCCTTACCCACATCTCACGCATCCCCTCTCCTCC
TTCCTCCCCCTTATTCCCCCCAAGGGGCCTCAACTGGCATCGGGAACCAC
GCCGCCATCCACCTCGCCACCCAGCACCCCCTCACCACTATCTATGCCGG
AATCCGCAAGGACAAAGACGCCGAAGCCATTGCCGCCTTAAACATGCCCA
ACCTTCTCCCCCTCAAGCTTGACACGACAGACCAAGCCTCCATGGACGCA
GCCGTCGCCCAGGTCCTTACCACCGGGATCCCAGTAATCGGCCTGGTCAA
CAATGCTGGCGTCAGCAACAACTCCCCCCTTGAGTTTTTGCCCATGCCCA
AACTACGACAACTGCTGGAAACCAACGTGGTAGGGCCCACGTACCTTACG
CAGAAGCTTACTCCTGCCCTCCGTGCATCCCAGGGACGTGTCGTGCAGAT
TTCCTCCGTGCTGGGTAAAGTCACCTTGGCGACCCGTGGTGCTTACAGTG
CTAGTAAACACGCCTTTGAAGCCTTGAGCGATGTCTTTCGATTGGAGCTT
GCTAATTTTGGAGTTTCTGTTTCAATTGTAGAGCCCGCATACGTCAAGAC
GGAGATTTTTGGAAAGGTACAACAAGATATCGATGGGATGAAATCAGCCG
AGCTGTTGGAGTTATACGGCCCCCTTTATTATCGAGCAGACCAAGCGAAG
AAGAAACAAAAACAGATCGAGGGGGGGGATAGCCCGATGGTGACATCGGA
GGCCATCGAGCATGCGATGTTCCACCGCTTCCCCAAGACCCGATATGTGG
TGGCAAATTTCGCAGGCATACCGGCGGACGTGTGTTTGTATTTGAATTGG
TTAATGCCCGATCGGCTGCTCGATTTGGTCAAAAGCAAGATGTGAGTGGG
AGAGCAGGAAGAGGGAGGGGAGCGAGAGGGAGAAAGGAGGGGTAGAAGAA
AGAAGCTTTAAAGTAATAGAAAATCCCACTTATCCACTTGCATCCTGTCG
TAGACCCGGTTTCAAATCTCTCTTCCTTATAATCTCCGCAGACAGGCCTG
TATCCTTATCCTCTTATATATACTCAGGAACCATGGAGAGAGGGAGGAAG
CCCGATCAATTCGAACTACTTTCACCACAATGTCCATTTATCTGTGTGCT
ATATATTCGCGTGTTACACTTGCTATGACCAACACCACTCTGTCGCAATT
GCTACTGCTGCTGCTGTGCTACTGCTGCTGCTGCTACTGATCACATTTAC
ATTTGCGCGCTGCGTCCTCTGGTTAATGACACATGGTCAAATTAGGCAAG
CAATAACAGCAACAGTAGAAGGAGCAGCAGCCAGCCGTCAATGAAGAAGA
AACGGCGGATGAGAACGAATGCTATCACTCACCTTCTTCTTACAGAGGTG
TGGTGCGCACAGTCTTTACTTTACCGTAAGTCCTTTCTTCCCATCTCTCT
CTTCCTCCCCTTTAATTCTTCATGTCCTTACTCTTTAGCTCTTGAGAAAC
TATGTTTACTCCAAAAGCATATCTCTATGGGTCCTTGACATTCCTACTTT
CTCATCCCCTGTCCTCCTCTCTCTCCTCCTTCCCTTCCTTATATCCGCCC
CAGACATCTCCCCTCTATGCAGTCACACGACTCAAAATCGAGAAACGTAA
TTCCTAATCTTTAGATGAAAAACATTTCTTAAATCATTACCCCACCTCCC
CACCCACTCCCCCCTCCTCCCGTTCCTCCTCCTGCTGCAGTTCCTCCTCC

Coding sequence (CDS) from alignment at scaffold_22:146671..148720+

>mRNA_7909 ID=mRNA_7909|Name=jgi.p|Nanoce1779_2|600493|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_22:146671..148720+ (Nannochloropsis oceanica)
ATGAAAGGCGCTCTCTTCATCTTCGCCCTCTGGGGCGTCCTCTTTGCCTT
GGTACCGATTGTGGTGGATTATGCCACGCGGAAAGAATTTATTGTGCACA
GCTCAGGTGCAATTATTGTCACTGGGGCCTCAACTGGCATCGGGAACCAC
GCCGCCATCCACCTCGCCACCCAGCACCCCCTCACCACTATCTATGCCGG
AATCCGCAAGGACAAAGACGCCGAAGCCATTGCCGCCTTAAACATGCCCA
ACCTTCTCCCCCTCAAGCTTGACACGACAGACCAAGCCTCCATGGACGCA
GCCGTCGCCCAGGTCCTTACCACCGGGATCCCAGTAATCGGCCTGGTCAA
CAATGCTGGCGTCAGCAACAACTCCCCCCTTGAGTTTTTGCCCATGCCCA
AACTACGACAACTGCTGGAAACCAACGTGGTAGGGCCCACGTACCTTACG
CAGAAGCTTACTCCTGCCCTCCGTGCATCCCAGGGACGTGTCGTGCAGAT
TTCCTCCGTGCTGGGTAAAGTCACCTTGGCGACCCGTGGTGCTTACAGTG
CTAGTAAACACGCCTTTGAAGCCTTGAGCGATGTCTTTCGATTGGAGCTT
GCTAATTTTGGAGTTTCTGTTTCAATTGTAGAGCCCGCATACGTCAAGAC
GGAGATTTTTGGAAAGGTACAACAAGATATCGATGGGATGAAATCAGCCG
AGCTGTTGGAGTTATACGGCCCCCTTTATTATCGAGCAGACCAAGCGAAG
AAGAAACAAAAACAGATCGAGGGGGGGGATAGCCCGATGGTGACATCGGA
GGCCATCGAGCATGCGATGTTCCACCGCTTCCCCAAGACCCGATATGTGG
TGGCAAATTTCGCAGGCATACCGGCGGACGTGTGTTTGTATTTGAATTGG
TTAATGCCCGATCGGCTGCTCGATTTGGTCAAAAGCAAGATGTGAATGAA
AGGCGCTCTCTTCATCTTCGCCCTCTGGGGCGTCCTCTTTGCCTTGGTAC
CGATTGTGGTGGATTATGCCACGCGGAAAGAATTTATTGTGCACAGCTCA
GGTGCAATTATTGTCACTGGGGCCTCAACTGGCATCGGGAACCACGCCGC
CATCCACCTCGCCACCCAGCACCCCCTCACCACTATCTATGCCGGAATCC
GCAAGGACAAAGACGCCGAAGCCATTGCCGCCTTAAACATGCCCAACCTT
CTCCCCCTCAAGCTTGACACGACAGACCAAGCCTCCATGGACGCAGCCGT
CGCCCAGGTCCTTACCACCGGGATCCCAGTAATCGGCCTGGTCAACAATG
CTGGCGTCAGCAACAACTCCCCCCTTGAGTTTTTGCCCATGCCCAAACTA
CGACAACTGCTGGAAACCAACGTGGTAGGGCCCACGTACCTTACGCAGAA
GCTTACTCCTGCCCTCCGTGCATCCCAGGGACGTGTCGTGCAGATTTCCT
CCGTGCTGGGTAAAGTCACCTTGGCGACCCGTGGTGCTTACAGTGCTAGT
AAACACGCCTTTGAAGCCTTGAGCGATGTCTTTCGATTGGAGCTTGCTAA
TTTTGGAGTTTCTGTTTCAATTGTAGAGCCCGCATACGTCAAGACGGAGA
TTTTTGGAAAGGTACAACAAGATATCGATGGGATGAAATCAGCCGAGCTG
TTGGAGTTATACGGCCCCCTTTATTATCGAGCAGACCAAGCGAAGAAGAA
ACAAAAACAGATCGAGGGGGGGGATAGCCCGATGGTGACATCGGAGGCCA
TCGAGCATGCGATGTTCCACCGCTTCCCCAAGACCCGATATGTGGTGGCA
AATTTCGCAGGCATACCGGCGGACGTGTGTTTGTATTTGAATTGGTTAAT
GCCCGATCGGCTGCTCGATTTGGTCAAAAGCAAGATGTGA

Synonyms

Publications