jgi.p|Nanoce1779_2|600474, mRNA_7906 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600474
Unique NamemRNA_7906
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2309
Alignment locationscaffold_22:133613..135921 -

Link to JBrowse

Properties
Property NameValue
TranscriptId600560
TrackFilteredModels2
ProteinId600474
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:133613..135921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600474gene_7906Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600474mRNA_7906-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7906CDS_7906Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7906 ID=mRNA_7906|Name=jgi.p|Nanoce1779_2|600474|organism=Nannochloropsis oceanica|type=mRNA|length=2309bp
CAAGCATTCTTCTCGTTTCGCCAGGACGACGGCCCATGCAGCTTTTGATG
CACTTGCACCTATTTGAGAGTTTTTCCTCACTATCAGGGCGCGTTTTACG
TCCACTTACAGCCAATTTACCATCGTGCAGAATATTCGGACACCTTTCTG
GCCAGCTTAAAATCTTTTAATTGATTCGATTTGTCGCGCCGGCGATTTGA
ACAAGACAGAATAAACTCGAGGAGCCTTGGGAGCCCACTTGGTGAATTTC
AAGATGCCCCCAAATTCACCGCGCATTTTAATCTATGACGTGAGTGCGTG
TCTCCACTGTCATTATTTCTGCCGCTCCAGCAGTTCAAGCTGTGGTGAAA
TTTTGATACCGAGCGCACTGGGTGGCAACGCAACGGACGAGCGTCGCTAA
CAGCGATCAAGTAAAAGGCAAGTCGAGTTGCCGTGTCACTACGATACTTC
ATATCACCGCGCCACACATGATTACTTTAGATGGCCGTGCCACAAACACC
CGCACACTAACTACAGCACCCACACAGAATCCAAGAGGTTTAATCACCTA
CGACTGACCGTGCTGGCACGAACGAGAAAACAAAGCAAGCAACCATGACA
AGCGCCGCGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCTCACGCG
GGCCTTCCTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGGCTAGCA
CGAGCAAGCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTGTGGAAG
GGATGGGCGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAGTAATCT
CACCACCACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCTCTTCCA
CTTCATCTTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCGGCTGTA
TTTCCCGACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCCGCAATC
TCGCATTAATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGATCGATT
CACATCTGGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAGGGAGGG
AAGACGCAGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGACGTGCT
GGTGTCGCTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAGACCAGC
GTCGCCGCCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGCCCCCCG
TTCTCCTTCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAGTCCCCT
TGCCGTCCTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCCCTTCCT
CGCGCACTCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGGCGCCGC
CTCCTCTCCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGTGATTGC
GTTTTGGACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGGCACGCG
ATGTGTTGAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCCTTGTTG
GTGCAGGGAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGAGATGGC
GGTGGAGAGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGATGCCGA
CAGTCACCTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAGGACGAC
AATACCATGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTCCAGCCC
ACCTAGACGATGATTGAACAGGCAAGCATATCTTTACTCCCTTTTGTCTT
CTCAACGACATTTAAAATCGCTTTTTTTAAGGAAGTTGTGAGTATAAGAG
TAAGATATGGGGATATATTGCGTGGGTGAGTATAAGTGTACATTGTATAT
ATAGAGGAAGCGCCGTTCTAATTATTATGAAATGCGTTGATTACAGGGTC
AGAGAAGGGAGGCCTAAAGAGGTTCTGGGTTCGTCTTTGTGGTGTGTGAA
TATGTGCATTGTCCCAGCGTAATTAAGAGTGTGAAGAAACGTATATCTCC
TCTTGTACGGGTGGTGGGGTTCCTTTCGTGAGCGACAGCGGGTTTCATCT
AGATAAAGAGGAGCCATACATAAAGGTACATGTATAAATATACATATACA
TATATATGTATGTGTGTGTATTGGTATACATATATGTATGTGTGTATATG
TGTGTAGATATCTGGGTCTGGTTCTGGGTGTCTGTATGTCTGTATGTCTG
GGTGTCTCTGTGTGTGTTTGTGTGTGTGTGTCTGTGTGTGTCTGTGTATG
TCTGTATGTCTCTGTGTGTTTGTGTGTGTGTGTGTGTGTATGTCTGTATG
TCTGGGTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|600474

>mRNA_7906-protein ID=mRNA_7906-protein|Name=jgi.p|Nanoce1779_2|600474|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MTSAAAGFPHPVLPLELTRAFLQYLDVSTLLSLASTSKLGLALMDGESGL
WKGWADRRMLYFGAPESNLTTTTSSSAISIHSASSTSSLTTTEGGPHPFA
AVFPDGEGLDGIDFIGPQSRINVAAFNALRVKAIDSHLAPLLDKMGGKGE
GGKTQPCLISTYFQAFDVLVSLRADDAIDAILQDQRRRLFLATSSPSCPS
PPFSFSSLPPAPSTLLSPLAVLLALHLLYRSLPPSSRTLPSPYPSCGAWR
RRLLSFLAEGPFQGLAVIAFWTMGSHNPQNGFRARDVLKTEKLDLRRVAS
LLVQGGTKGGMEGGKEEMAVERALAKLESLRGMMPTVTLSPAVVYVGGVE
DDNTMCVNSQGFFALSSSPPRR*
back to top

mRNA from alignment at scaffold_22:133613..135921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7906 ID=mRNA_7906|Name=jgi.p|Nanoce1779_2|600474|organism=Nannochloropsis oceanica|type=mRNA|length=2309bp|location=Sequence derived from alignment at scaffold_22:133613..135921- (Nannochloropsis oceanica)
CAAGCATTCTTCTCGTTTCGCCAGGACGACGGCCCATGCAGCTTTTGATG
CACTTGCACCTATTTGAGAGTTTTTCCTCACTATCAGGGCGCGTTTTACG
TCCACTTACAGCCAATTTACCATCGTGCAGAATATTCGGACACCTTTCTG
GCCAGCTTAAAATCTTTTAATTGATTCGATTTGTCGCGCCGGCGATTTGA
ACAAGACAGAATAAACTCGAGGAGCCTTGGGAGCCCACTTGGTGAATTTC
AAGATGCCCCCAAATTCACCGCGCATTTTAATCTATGACGTGAGTGCGTG
TCTCCACTGTCATTATTTCTGCCGCTCCAGCAGTTCAAGCTGTGGTGAAA
TTTTGATACCGAGCGCACTGGGTGGCAACGCAACGGACGAGCGTCGCTAA
CAGCGATCAAGTAAAAGGCAAGTCGAGTTGCCGTGTCACTACGATACTTC
ATATCACCGCGCCACACATGATTACTTTAGATGGCCGTGCCACAAACACC
CGCACACTAACTACAGCACCCACACAGAATCCAAGAGGTTTAATCACCTA
CGACTGACCGTGCTGGCACGAACGAGAAAACAAAGCAAGCAACCATGACA
AGCGCCGCGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCTCACGCG
GGCCTTCCTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGGCTAGCA
CGAGCAAGCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTGTGGAAG
GGATGGGCGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAGTAATCT
CACCACCACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCTCTTCCA
CTTCATCTTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCGGCTGTA
TTTCCCGACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCCGCAATC
TCGCATTAATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGATCGATT
CACATCTGGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAGGGAGGG
AAGACGCAGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGACGTGCT
GGTGTCGCTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAGACCAGC
GTCGCCGCCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGCCCCCCG
TTCTCCTTCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAGTCCCCT
TGCCGTCCTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCCCTTCCT
CGCGCACTCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGGCGCCGC
CTCCTCTCCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGTGATTGC
GTTTTGGACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGGCACGCG
ATGTGTTGAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCCTTGTTG
GTGCAGGGAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGAGATGGC
GGTGGAGAGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGATGCCGA
CAGTCACCTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAGGACGAC
AATACCATGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTCCAGCCC
ACCTAGACGATGATTGAACAGGCAAGCATATCTTTACTCCCTTTTGTCTT
CTCAACGACATTTAAAATCGCTTTTTTTAAGGAAGTTGTGAGTATAAGAG
TAAGATATGGGGATATATTGCGTGGGTGAGTATAAGTGTACATTGTATAT
ATAGAGGAAGCGCCGTTCTAATTATTATGAAATGCGTTGATTACAGGGTC
AGAGAAGGGAGGCCTAAAGAGGTTCTGGGTTCGTCTTTGTGGTGTGTGAA
TATGTGCATTGTCCCAGCGTAATTAAGAGTGTGAAGAAACGTATATCTCC
TCTTGTACGGGTGGTGGGGTTCCTTTCGTGAGCGACAGCGGGTTTCATCT
AGATAAAGAGGAGCCATACATAAAGGTACATGTATAAATATACATATACA
TATATATGTATGTGTGTGTATTGGTATACATATATGTATGTGTGTATATG
TGTGTAGATATCTGGGTCTGGTTCTGGGTGTCTGTATGTCTGTATGTCTG
GGTGTCTCTGTGTGTGTTTGTGTGTGTGTGTCTGTGTGTGTCTGTGTATG
TCTGTATGTCTCTGTGTGTTTGTGTGTGTGTGTGTGTGTATGTCTGTATG
TCTGGGTGT
back to top

Coding sequence (CDS) from alignment at scaffold_22:133613..135921-

>mRNA_7906 ID=mRNA_7906|Name=jgi.p|Nanoce1779_2|600474|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at scaffold_22:133613..135921- (Nannochloropsis oceanica)
ATGACAAGCGCCGCGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCT
CACGCGGGCCTTCCTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGG
CTAGCACGAGCAAGCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTG
TGGAAGGGATGGGCGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAG
TAATCTCACCACCACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCT
CTTCCACTTCATCTTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCG
GCTGTATTTCCCGACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCC
GCAATCTCGCATTAATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGA
TCGATTCACATCTGGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAG
GGAGGGAAGACGCAGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGA
CGTGCTGGTGTCGCTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAG
ACCAGCGTCGCCGCCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGC
CCCCCGTTCTCCTTCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAG
TCCCCTTGCCGTCCTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCC
CTTCCTCGCGCACTCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGG
CGCCGCCTCCTCTCCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGT
GATTGCGTTTTGGACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGG
CACGCGATGTGTTGAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCC
TTGTTGGTGCAGGGAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGA
GATGGCGGTGGAGAGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGA
TGCCGACAGTCACCTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAG
GACGACAATACCATGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTC
CAGCCCACCTAGACGATGA
back to top
Synonyms
Publications