jgi.p|Nanoce1779_2|175531, mRNA_7902 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|175531
Unique Name	mRNA_7902
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	734
Alignment location	scaffold_22:124324..125421 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	175617
Track	FilteredModels2
ProteinId	175531

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:124324..125421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|175531	gene_7902	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|175531	mRNA_7902-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7902	CDS_7902	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:124324..125421+
coding sequence from alignment at scaffold_22:124324..125421+

mRNA sequence

>mRNA_7902 ID=mRNA_7902|Name=jgi.p|Nanoce1779_2|175531|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
CTTCACCTTCCTCTCTCCCCTTGGTTTTCATTTAATTTTTTAAAATTAAA
CGGCTTTTGGTGTTTTCTCCCTACCTGTCATCACGCGTTGCGTGGCTTTT
GCTTTTTTAGGGTGGGTTCAATTCTTCTCCACTCGACCGAAAGAGAGTGC
TTGGGACAACAAGGAAAAAACATTTTTTTTGACGAGTAATGGTACTAGTA
ATCATGGTGGTGGTGGTGGTGGTGGTGGTGCTGCCGCTGCTGGTGCTTGA
GCGGGTGCTACCTCTTCTCCTCATGTTCCGCGCCTTCCTCCTCCTTTCCA
TCCTCCTCCTTTCCCTCCTTTTCCTTTGTCTTAGGTCTCCCCTTTTGTAC
TGTCGTCCACCTGCTTCCCACAAATTTATTACACCAACACGGACAGTGCC
TTCATCCCTCCCTTCCTTCCTTCCCTCCCTCCTTGCCTTACAACCTCCTC
AACACTCTTTTCTTTTTCTCACCTACTGGTACACGCTTTCCCCTCCGTCC
CTCCCTCCCTCCTTACCTCCTTACCTCACTCCCCCCCCAGAGACCCCGTC
CGGCCTGCCTTGCGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGA
AGAAGGGACACACTCCTCTTCTTCCTCTTGACGGATGACCGCCACGCGGA
CCTTGGACGAGGGAGTGGACGCACTCATGCAGCATCAAGGCATCTTCGTG
GAGGGTGCTGAGCTCGTGTTTTTTGTCACTCAGC

protein sequence of jgi.p|Nanoce1779_2|175531

>mRNA_7902-protein ID=mRNA_7902-protein|Name=jgi.p|Nanoce1779_2|175531|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MVLVIMVVVVVVVVLPLLVLERVLPLLLMFRAFLLLSILLLSLLFLCLRS
PLLYCRPPASHKFITPTRTVPSSLPSFLPSLLALQPPQHSFLFLTYWYTL
SPPSLPPSLPPYLTPPPETPSGLPCEGGREGGRKGRRKKGHTPLLPLDG*

mRNA from alignment at scaffold_22:124324..125421+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7902 ID=mRNA_7902|Name=jgi.p|Nanoce1779_2|175531|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp|location=Sequence derived from alignment at scaffold_22:124324..125421+ (Nannochloropsis oceanica)
CTTCACCTTCCTCTCTCCCCTTGGTTTTCATTTAATTTTTTAAAATTAAA
CGGCTTTTGGTGTTTTCTCCCTACCTGTCATCACGCGTTGCGTGGCTTTT
GCTTTTTTAGGGTGGGTTCAATTCTTCTCCACTCGACCGAAAGAGAGTGC
TTGGGACAACAAGGAAAAAACATTTTTTTTGACGAGTAATGGTACTAGTA
ATCATGGTGGTGGTGGTGGTGGTGGTGGTGCTGCCGCTGCTGGTGCTTGA
GCGGGTGCTACCTCTTCTCCTCATGTTCCGCGCCTTCCTCCTCCTTTCCA
TCCTCCTCCTTTCCCTCCTTTTCCTTTGTCTTAGGTCTCCCCTTTTGTAC
TGTCGTCCACCTGCTTCCCACAAATTTATTACACCAACACGGACAGTGCC
TTCATCCCTCCCTTCCTTCCTTCCCTCCCTCCTTGCCTTACAACCTCCTC
AACACTCTTTTCTTTTTCTCACCTACTGGTACACGCTTTCCCCTCCGTCC
CTCCCTCCCTCCTTACCTCCTTACCTCACTCCCCCCCCAGAGACCCCGTC
CGGCCTGCCTTGCGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGA
AGAAGGGACACACTCCTCTTCTTCCTCTTGACGGATGACCGCCACGCGGA
CCTTGGACGAGGGAGGGAGGGAGGAAAAGGGAGAGGAGGAGGAACCGAGA
GAAGAAGAGGCGGAGACGGAGAGGGAGGGGGGGCGTTGATAGCCCGGGCG
GGATTGAATGAACAGCTGGAGGAAGAGTTTATTTGTTGTCTGAGGAGGGG
GGGAGGGAGGGAGGGAGGGAGAGAATGAAGGATTACTTGTCTCCCGCCGC
GTTCAATAGTCCTTCAATATTCCTTCCTTTCCTTTCTTTCCTTCCTGCCC
TCGTATCCTTTGTCCCCCCCTCCTTGTACCTGGATCTGATCATTGGAGCT
GAAGAAACTTGCGAGGTGGAGGAGGACCGAGGCAGGCAGGGCGCGGAGGA
GGAGGGGGAGGAGGTGGGTCCGGCGGGAGTGGACGCACTCATGCAGCATC
AAGGCATCTTCGTGGAGGGTGCTGAGCTCGTGTTTTTTGTCACTCAGC

Coding sequence (CDS) from alignment at scaffold_22:124324..125421+

>mRNA_7902 ID=mRNA_7902|Name=jgi.p|Nanoce1779_2|175531|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_22:124324..125421+ (Nannochloropsis oceanica)
ATGGTACTAGTAATCATGGTGGTGGTGGTGGTGGTGGTGGTGCTGCCGCT
GCTGGTGCTTGAGCGGGTGCTACCTCTTCTCCTCATGTTCCGCGCCTTCC
TCCTCCTTTCCATCCTCCTCCTTTCCCTCCTTTTCCTTTGTCTTAGGTCT
CCCCTTTTGTACTGTCGTCCACCTGCTTCCCACAAATTTATTACACCAAC
ACGGACAGTGCCTTCATCCCTCCCTTCCTTCCTTCCCTCCCTCCTTGCCT
TACAACCTCCTCAACACTCTTTTCTTTTTCTCACCTACTGGTACACGCTT
TCCCCTCCGTCCCTCCCTCCCTCCTTACCTCCTTACCTCACTCCCCCCCC
AGAGACCCCGTCCGGCCTGCCTTGCGAGGGAGGGAGGGAGGGAGGGAGGA
AGGGAAGGAGGAAGAAGGGACACACTCCTCTTCTTCCTCTTGACGGATGA

Synonyms

Publications