jgi.p|Nanoce1779_2|600448, mRNA_7900 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600448
Unique NamemRNA_7900
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1141
Alignment locationscaffold_22:116673..117813 +

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Properties
Property NameValue
TranscriptId600534
TrackFilteredModels2
ProteinId600448
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:116673..117813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600448gene_7900Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600448mRNA_7900-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7900CDS_7900Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Nanoce1779_2|600448|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp
CAGGAGTTGAAGAAGAGAGGTATCGCCGCCAAAAGCACCAAGTACTCTCC
GTGGGGAGTGGTATTGGAGGAGGGCGGGGGGGAAGAAGGGAAGAAGGGCA
GGGGGTTCAGGGTGTTTGAGCAAGACATTTATAAGCTGGGGTACGTCGAC
TTGATGAACGAAGCGAGTCAGTGCGTGGCCTTGTCCACAGGCGCGAAACC
CTACGACATTGTGTTGTTGTACGGCGCGAGGAAGGGCGTAAAGGCTTTGG
CTCTTGCGAGCATGCTGAGGGGCAATGGAATGATTTATTTGTGGGAGCCT
TATTTAAGACAGCTTTTTCAATTAAACGAGGCAATTAGACGGGGACAGGC
GACGGATCTAATGGAGGTGTTGCCTAATGTGAACGCCGCGATGAGGATCA
AGGCGGACGTGGTCCTTGTCGATGCCCTGTGCTCCAACACAGGGGCCTTG
GCCCATCACCCAAGCATGCGGTGGTTGAAGAATGAGACGTGGGTGGTGGA
AAGCCTCGTGCCGCAACAGAAAAATGATTTGCAGAACGCTGCCCGGGCAG
TGAGTCCGGGAGGGGTCTTGTTGTACTCGACATGTTCCTTGCTGGCATGT
GAAAACCAGGAGGTGGTGGATTGGTTCGATGAAACGTTTGCGGACGAATT
TGAATCGTTGCCGTTTGATAAAACGGGCGGGCCGGGGGGAAATCGGAGGG
CGTTGTTGCCGCATGTGCATGGAGTGGATGGGACGTTTATTGCGCGGTGG
AGGAGGAAATTGGGGGATTAGAAGCCCCTTTCCCTGTCGTCCTCTCTGGC
CCCCTCTTCCTCCCTACTTCCCCTTTTATCCGTGAGGAGGGATATTGAGA
GATAGGATAGGAAAGAAAGGAGAAAAGAGGGAATTTGAAGTGTAAGGTGC
TGACTTTACGCCTCTCTCTTCTTTAATTCTAACCAGTCTTACCAGAAAGG
GTATCATTTTCTTTGAAAATAAAGTCTTCCTCCGAGGGCGCATGTATGCG
AAAGATGAAGAAAGAATGGCCACTGAGGTGGCGGTTTGCGCCTTATCTCT
GTGTGCGTCCGTTGGAGTGACTTTCCGTGCGTGCTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
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protein sequence of jgi.p|Nanoce1779_2|600448

>mRNA_7900-protein ID=mRNA_7900-protein|Name=jgi.p|Nanoce1779_2|600448|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MNEASQCVALSTGAKPYDIVLLYGARKGVKALALASMLRGNGMIYLWEPY
LRQLFQLNEAIRRGQATDLMEVLPNVNAAMRIKADVVLVDALCSNTGALA
HHPSMRWLKNETWVVESLVPQQKNDLQNAARAVSPGGVLLYSTCSLLACE
NQEVVDWFDETFADEFESLPFDKTGGPGGNRRALLPHVHGVDGTFIARWR
RKLGD*
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mRNA from alignment at scaffold_22:116673..117813+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Nanoce1779_2|600448|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp|location=Sequence derived from alignment at scaffold_22:116673..117813+ (Nannochloropsis oceanica)
CAGGAGTTGAAGAAGAGAGGTATCGCCGCCAAAAGCACCAAGTACTCTCC
GTGGGGAGTGGTATTGGAGGAGGGCGGGGGGGAAGAAGGGAAGAAGGGCA
GGGGGTTCAGGGTGTTTGAGCAAGACATTTATAAGCTGGGGTACGTCGAC
TTGATGAACGAAGCGAGTCAGTGCGTGGCCTTGTCCACAGGCGCGAAACC
CTACGACATTGTGTTGTTGTACGGCGCGAGGAAGGGCGTAAAGGCTTTGG
CTCTTGCGAGCATGCTGAGGGGCAATGGAATGATTTATTTGTGGGAGCCT
TATTTAAGACAGCTTTTTCAATTAAACGAGGCAATTAGACGGGGACAGGC
GACGGATCTAATGGAGGTGTTGCCTAATGTGAACGCCGCGATGAGGATCA
AGGCGGACGTGGTCCTTGTCGATGCCCTGTGCTCCAACACAGGGGCCTTG
GCCCATCACCCAAGCATGCGGTGGTTGAAGAATGAGACGTGGGTGGTGGA
AAGCCTCGTGCCGCAACAGAAAAATGATTTGCAGAACGCTGCCCGGGCAG
TGAGTCCGGGAGGGGTCTTGTTGTACTCGACATGTTCCTTGCTGGCATGT
GAAAACCAGGAGGTGGTGGATTGGTTCGATGAAACGTTTGCGGACGAATT
TGAATCGTTGCCGTTTGATAAAACGGGCGGGCCGGGGGGAAATCGGAGGG
CGTTGTTGCCGCATGTGCATGGAGTGGATGGGACGTTTATTGCGCGGTGG
AGGAGGAAATTGGGGGATTAGAAGCCCCTTTCCCTGTCGTCCTCTCTGGC
CCCCTCTTCCTCCCTACTTCCCCTTTTATCCGTGAGGAGGGATATTGAGA
GATAGGATAGGAAAGAAAGGAGAAAAGAGGGAATTTGAAGTGTAAGGTGC
TGACTTTACGCCTCTCTCTTCTTTAATTCTAACCAGTCTTACCAGAAAGG
GTATCATTTTCTTTGAAAATAAAGTCTTCCTCCGAGGGCGCATGTATGCG
AAAGATGAAGAAAGAATGGCCACTGAGGTGGCGGTTTGCGCCTTATCTCT
GTGTGCGTCCGTTGGAGTGACTTTCCGTGCGTGCTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
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Coding sequence (CDS) from alignment at scaffold_22:116673..117813+

>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Nanoce1779_2|600448|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_22:116673..117813+ (Nannochloropsis oceanica)
ATGAACGAAGCGAGTCAGTGCGTGGCCTTGTCCACAGGCGCGAAACCCTA
CGACATTGTGTTGTTGTACGGCGCGAGGAAGGGCGTAAAGGCTTTGGCTC
TTGCGAGCATGCTGAGGGGCAATGGAATGATTTATTTGTGGGAGCCTTAT
TTAAGACAGCTTTTTCAATTAAACGAGGCAATTAGACGGGGACAGGCGAC
GGATCTAATGGAGGTGTTGCCTAATGTGAACGCCGCGATGAGGATCAAGG
CGGACGTGGTCCTTGTCGATGCCCTGTGCTCCAACACAGGGGCCTTGGCC
CATCACCCAAGCATGCGGTGGTTGAAGAATGAGACGTGGGTGGTGGAAAG
CCTCGTGCCGCAACAGAAAAATGATTTGCAGAACGCTGCCCGGGCAGTGA
GTCCGGGAGGGGTCTTGTTGTACTCGACATGTTCCTTGCTGGCATGTGAA
AACCAGGAGGTGGTGGATTGGTTCGATGAAACGTTTGCGGACGAATTTGA
ATCGTTGCCGTTTGATAAAACGGGCGGGCCGGGGGGAAATCGGAGGGCGT
TGTTGCCGCATGTGCATGGAGTGGATGGGACGTTTATTGCGCGGTGGAGG
AGGAAATTGGGGGATTAG
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Synonyms
Publications