jgi.p|Nanoce1779_2|574151, mRNA_790 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574151
Unique Name	mRNA_790
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1962
Alignment location	scaffold_2:441099..443060 -

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Properties


Property Name	Value
TranscriptId	574237
Track	FilteredModels2
ProteinId	574151

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:441099..443060 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574151	gene_790	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574151	mRNA_790-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_790	CDS_790	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:441099..443060-
coding sequence from alignment at scaffold_2:441099..443060-

mRNA sequence

>mRNA_790 ID=mRNA_790|Name=jgi.p|Nanoce1779_2|574151|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
CAGCAGCAGGGTGCGGCGCAGGGAGAGCAGATAGCTGTAGGGGTGGGGGA
GGGGCTAGGGGATGATTCGCAACAGCAAGGCTTTTATTGGGGTCCGTCTA
GCCTACATCAACAGCAGCAACAGCAACAGCAATCCGCCCAACAGCAACAA
GCAGCGCAGCCGCAGCAGCAGCACCAACAACAACAACAGCGGCAACAGGG
AGGAGAGGGGAACACGGGCCCCATACCTCTCTACAGAGACGAAAGGCTCG
TAGTCTACCGCAACGACGGGAATATGATGGAACTCACCCCTCGCGTCTTT
CCCGGCAGTGGCGGGGAAGATCTCTCCCTCCTCCTCGACGATTACCCCTC
CCGAATCCTGTCAATGGCGTCTGTTGCTCGATTAGGGTCCTTGATGCTGG
CTGCATCAGGGTTGGCATATCTGGCTGTCGTCCCTCGAAATTCCCCAACC
CAACATTACAACTATTTGTTCAAGACGAACTTATTGCTAGTATCGGCCTC
CTTGGCCTGGCCACTCCTCTTGTTGGGCCTCATGTACAATGCGAGGGAAA
TCAATATCAATCATTTGATTCAGACATTCTTTACGGCGGCGACTGCGGGG
TATGTGGGTGTTTTTCTAGGGGAGATTGTGGTGGCAACCGGTTTGAAACT
GCTGGCTTTTAAGAAACTCGAACCGGGGATGCATGCGTCGTGCCCTGAGA
TCCCTTCGATTCATTTACCATGGGTGTGGAAGAGTGATTGCACGGGGTAC
CGTCCTCGACTCCTTACCTTACTAGTTGCCGATTTAATGATCAATTGTCT
TGCCAGTCCTGTCATCGAAGAGGCGGCCAAGTTACTTTGTTTCCGGTGGG
GATCCTGGATTCGACCCACTACTACCATGCAGGAAGACGAGAGGGAGGAG
CAGCTCCTGCAGCGCCGCCAGAAGCAGCAGCAGCACCGCCAACAGTCGAG
GACGTCAAGTTCTTCAGGAGCTGCTGACCAAGCCACTTCTCCCTTCTCTC
CTTTCAGCACCAGCGGTGGCCTCTCCTCATCCATGACCACCACCCAACGC
TGGCGCCGCCGGCCCCTCCGGAGCCTCCTTTCCCTCATTTTCTCCCTTTT
ACTCGCCCCCTTTTCCGCGGGTTCTGGCAGTCGTCGGTACCGTCGGCCGG
ACAGCGTGCACTCCACTCTCGTATACATGACAGCAGCATCTCTAGGCCTA
AAGGCCGCAGACAACGCCCGCCGTATCCTTATGTACACTAAACCCGAGGA
CACGTCGAAGCCTTTCTTCGCTTTGGCTCGAGGCTTTTTCCCTGTCCATG
AGCTGTGCGGGGCCTTCACCGCGCTAAATTTGGTGAGGCAGGATATACTG
GGCGAACGGATGTCGTGGTTTAGATTGCTGGCGCCTGCCGTCATATTGCA
TTCCATGGCGAATTTTAGGGGCATGAAGCCTGTGTTTAAGTGGGCATCGT
CCTCGCCTTGGACGGAGATGCAGCTGCAGGCATTAAGTGCCCCGGATTAC
GCGACGGCATTGCAGCAGATTTGGAAGGCTGTGTGGGGGTTGGTGTGGTT
TGCGGTGTTGGCCAGGGTGTTAGGGTATATCATGTTTAGGCATTACTTGT
TGAGCAAGCAGGTAAAGATACGGTACGCCAATTACGACTTTTAGGAACTT
TGATTGGATGGACATAGTGTATGGTTGATGTGGAGACGGTGGCATGTATA
GGGAATATGGCAAAGCGAGGAGAGAGATACGGGAGGGGGGAACTGGGTGG
TGGGGAGGTTTTGATCGAGAGGGTGGAAAGGATGCCAAGCGCCCCTTGAT
GGAATAAGACAAATGAGGAAAGAGGCTTGTAATATGAGCGTAGAGCTCTT
AGTTGTCCTGGTACGGTCGCTCTGATTTTGTTCTTTGTGGCCTGCCTCCC
CTCGCCCATCTCCCACCCCCCTTTCTGACATTTCTCCTTCCCCAAAATAG
CTTCAACCTTCG

protein sequence of jgi.p|Nanoce1779_2|574151

>mRNA_790-protein ID=mRNA_790-protein|Name=jgi.p|Nanoce1779_2|574151|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MMELTPRVFPGSGGEDLSLLLDDYPSRILSMASVARLGSLMLAASGLAYL
AVVPRNSPTQHYNYLFKTNLLLVSASLAWPLLLLGLMYNAREININHLIQ
TFFTAATAGYVGVFLGEIVVATGLKLLAFKKLEPGMHASCPEIPSIHLPW
VWKSDCTGYRPRLLTLLVADLMINCLASPVIEEAAKLLCFRWGSWIRPTT
TMQEDEREEQLLQRRQKQQQHRQQSRTSSSSGAADQATSPFSPFSTSGGL
SSSMTTTQRWRRRPLRSLLSLIFSLLLAPFSAGSGSRRYRRPDSVHSTLV
YMTAASLGLKAADNARRILMYTKPEDTSKPFFALARGFFPVHELCGAFTA
LNLVRQDILGERMSWFRLLAPAVILHSMANFRGMKPVFKWASSSPWTEMQ
LQALSAPDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVKIR
YANYDF*

mRNA from alignment at scaffold_2:441099..443060-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_790 ID=mRNA_790|Name=jgi.p|Nanoce1779_2|574151|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at scaffold_2:441099..443060- (Nannochloropsis oceanica)
CAGCAGCAGGGTGCGGCGCAGGGAGAGCAGATAGCTGTAGGGGTGGGGGA
GGGGCTAGGGGATGATTCGCAACAGCAAGGCTTTTATTGGGGTCCGTCTA
GCCTACATCAACAGCAGCAACAGCAACAGCAATCCGCCCAACAGCAACAA
GCAGCGCAGCCGCAGCAGCAGCACCAACAACAACAACAGCGGCAACAGGG
AGGAGAGGGGAACACGGGCCCCATACCTCTCTACAGAGACGAAAGGCTCG
TAGTCTACCGCAACGACGGGAATATGATGGAACTCACCCCTCGCGTCTTT
CCCGGCAGTGGCGGGGAAGATCTCTCCCTCCTCCTCGACGATTACCCCTC
CCGAATCCTGTCAATGGCGTCTGTTGCTCGATTAGGGTCCTTGATGCTGG
CTGCATCAGGGTTGGCATATCTGGCTGTCGTCCCTCGAAATTCCCCAACC
CAACATTACAACTATTTGTTCAAGACGAACTTATTGCTAGTATCGGCCTC
CTTGGCCTGGCCACTCCTCTTGTTGGGCCTCATGTACAATGCGAGGGAAA
TCAATATCAATCATTTGATTCAGACATTCTTTACGGCGGCGACTGCGGGG
TATGTGGGTGTTTTTCTAGGGGAGATTGTGGTGGCAACCGGTTTGAAACT
GCTGGCTTTTAAGAAACTCGAACCGGGGATGCATGCGTCGTGCCCTGAGA
TCCCTTCGATTCATTTACCATGGGTGTGGAAGAGTGATTGCACGGGGTAC
CGTCCTCGACTCCTTACCTTACTAGTTGCCGATTTAATGATCAATTGTCT
TGCCAGTCCTGTCATCGAAGAGGCGGCCAAGTTACTTTGTTTCCGGTGGG
GATCCTGGATTCGACCCACTACTACCATGCAGGAAGACGAGAGGGAGGAG
CAGCTCCTGCAGCGCCGCCAGAAGCAGCAGCAGCACCGCCAACAGTCGAG
GACGTCAAGTTCTTCAGGAGCTGCTGACCAAGCCACTTCTCCCTTCTCTC
CTTTCAGCACCAGCGGTGGCCTCTCCTCATCCATGACCACCACCCAACGC
TGGCGCCGCCGGCCCCTCCGGAGCCTCCTTTCCCTCATTTTCTCCCTTTT
ACTCGCCCCCTTTTCCGCGGGTTCTGGCAGTCGTCGGTACCGTCGGCCGG
ACAGCGTGCACTCCACTCTCGTATACATGACAGCAGCATCTCTAGGCCTA
AAGGCCGCAGACAACGCCCGCCGTATCCTTATGTACACTAAACCCGAGGA
CACGTCGAAGCCTTTCTTCGCTTTGGCTCGAGGCTTTTTCCCTGTCCATG
AGCTGTGCGGGGCCTTCACCGCGCTAAATTTGGTGAGGCAGGATATACTG
GGCGAACGGATGTCGTGGTTTAGATTGCTGGCGCCTGCCGTCATATTGCA
TTCCATGGCGAATTTTAGGGGCATGAAGCCTGTGTTTAAGTGGGCATCGT
CCTCGCCTTGGACGGAGATGCAGCTGCAGGCATTAAGTGCCCCGGATTAC
GCGACGGCATTGCAGCAGATTTGGAAGGCTGTGTGGGGGTTGGTGTGGTT
TGCGGTGTTGGCCAGGGTGTTAGGGTATATCATGTTTAGGCATTACTTGT
TGAGCAAGCAGGTAAAGATACGGTACGCCAATTACGACTTTTAGGAACTT
TGATTGGATGGACATAGTGTATGGTTGATGTGGAGACGGTGGCATGTATA
GGGAATATGGCAAAGCGAGGAGAGAGATACGGGAGGGGGGAACTGGGTGG
TGGGGAGGTTTTGATCGAGAGGGTGGAAAGGATGCCAAGCGCCCCTTGAT
GGAATAAGACAAATGAGGAAAGAGGCTTGTAATATGAGCGTAGAGCTCTT
AGTTGTCCTGGTACGGTCGCTCTGATTTTGTTCTTTGTGGCCTGCCTCCC
CTCGCCCATCTCCCACCCCCCTTTCTGACATTTCTCCTTCCCCAAAATAG
CTTCAACCTTCG

Coding sequence (CDS) from alignment at scaffold_2:441099..443060-

>mRNA_790 ID=mRNA_790|Name=jgi.p|Nanoce1779_2|574151|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at scaffold_2:441099..443060- (Nannochloropsis oceanica)
ATGATGGAACTCACCCCTCGCGTCTTTCCCGGCAGTGGCGGGGAAGATCT
CTCCCTCCTCCTCGACGATTACCCCTCCCGAATCCTGTCAATGGCGTCTG
TTGCTCGATTAGGGTCCTTGATGCTGGCTGCATCAGGGTTGGCATATCTG
GCTGTCGTCCCTCGAAATTCCCCAACCCAACATTACAACTATTTGTTCAA
GACGAACTTATTGCTAGTATCGGCCTCCTTGGCCTGGCCACTCCTCTTGT
TGGGCCTCATGTACAATGCGAGGGAAATCAATATCAATCATTTGATTCAG
ACATTCTTTACGGCGGCGACTGCGGGGTATGTGGGTGTTTTTCTAGGGGA
GATTGTGGTGGCAACCGGTTTGAAACTGCTGGCTTTTAAGAAACTCGAAC
CGGGGATGCATGCGTCGTGCCCTGAGATCCCTTCGATTCATTTACCATGG
GTGTGGAAGAGTGATTGCACGGGGTACCGTCCTCGACTCCTTACCTTACT
AGTTGCCGATTTAATGATCAATTGTCTTGCCAGTCCTGTCATCGAAGAGG
CGGCCAAGTTACTTTGTTTCCGGTGGGGATCCTGGATTCGACCCACTACT
ACCATGCAGGAAGACGAGAGGGAGGAGCAGCTCCTGCAGCGCCGCCAGAA
GCAGCAGCAGCACCGCCAACAGTCGAGGACGTCAAGTTCTTCAGGAGCTG
CTGACCAAGCCACTTCTCCCTTCTCTCCTTTCAGCACCAGCGGTGGCCTC
TCCTCATCCATGACCACCACCCAACGCTGGCGCCGCCGGCCCCTCCGGAG
CCTCCTTTCCCTCATTTTCTCCCTTTTACTCGCCCCCTTTTCCGCGGGTT
CTGGCAGTCGTCGGTACCGTCGGCCGGACAGCGTGCACTCCACTCTCGTA
TACATGACAGCAGCATCTCTAGGCCTAAAGGCCGCAGACAACGCCCGCCG
TATCCTTATGTACACTAAACCCGAGGACACGTCGAAGCCTTTCTTCGCTT
TGGCTCGAGGCTTTTTCCCTGTCCATGAGCTGTGCGGGGCCTTCACCGCG
CTAAATTTGGTGAGGCAGGATATACTGGGCGAACGGATGTCGTGGTTTAG
ATTGCTGGCGCCTGCCGTCATATTGCATTCCATGGCGAATTTTAGGGGCA
TGAAGCCTGTGTTTAAGTGGGCATCGTCCTCGCCTTGGACGGAGATGCAG
CTGCAGGCATTAAGTGCCCCGGATTACGCGACGGCATTGCAGCAGATTTG
GAAGGCTGTGTGGGGGTTGGTGTGGTTTGCGGTGTTGGCCAGGGTGTTAG
GGTATATCATGTTTAGGCATTACTTGTTGAGCAAGCAGGTAAAGATACGG
TACGCCAATTACGACTTTTAG

Synonyms

Publications